The DOI matches its Crossref record; 19 of the 19 references it cites were found in a registry or an index.
FreeSASA: An open source C library for solvent accessible surface area calculations
Open accessAbstract
Calculating solvent accessible surface areas (SASA) is a run-of-the-mill calculation in structural biology. Although there are many programs available for this calculation, there are no free-standing, open-source tools designed for easy tool-chain integration. FreeSASA is an open source C library for SASA calculations that provides both command-line and Python interfaces in addition to its C API. The library implements both Lee and Richards’ and Shrake and Rupley’s approximations, and is highly configurable to allow the user to control molecular parameters, accuracy and output granularity. It only depends on standard C libraries and should therefore be easy to compile and install on any platform. The library is well-documented, stable and efficient. The command-line interface can easily replace closed source legacy programs, with comparable or better accuracy and speed, and with some added functionality.
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Cites
The PyMOL Molecular Graphics System
DeLano, W. L. (2002) · Medical Entomology and Zoology · Cited by 18,147
The interpretation of protein structures: Estimation of static accessibility
Lee, B., & Richards, F. M. (1971) · Journal of Molecular Biology · doi:10.1016/0022-2836(71)90324-x · Cited by 5,850
Consistent van der Waals Radii for the Whole Main Group
Mantina, M., Chamberlin, A. C., Valero, R., Cramer, C. J., & Truhlar, D. G. (2009) · The Journal of Physical Chemistry A · doi:10.1021/jp8111556 · Cited by 1,866
PISCES: a protein sequence culling server
Wang, G., & Dunbrack, R. L. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg224 · Cited by 1,662
Environment and exposure to solvent of protein atoms. Lysozyme and insulin
Shrake, A., & Rupley, J. A. (1973) · Journal of Molecular Biology · doi:10.1016/0022-2836(73)90011-9 · Cited by 1,375
A series of PDB related databases for everyday needs
Joosten, R. P., te Beek, T. A. H., Krieger, E., Hekkelman, M. L., Hooft, R. W. W., Schneider, R., Sander, C., & Vriend, G. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1105 · Cited by 1,293
Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO)
Weiser, J., Shenkin, P. S., & Still, W. C. (1999) · Journal of Computational Chemistry · doi:10.1002/(sici)1096-987x(19990130)20:2<217::aid-jcc4>3.0.co;2-a · Cited by 1,198
Fraczkiewicz, R., & Braun, W. (1998) · Journal of Computational Chemistry · doi:10.1002/(sici)1096-987x(199802)19:3<319::aid-jcc6>3.0.co;2-w · Cited by 1,120
Eisenhaber, F., Lijnzaad, P., Argos, P., Sander, C., & Scharf, M. (1995) · Journal of Computational Chemistry · doi:10.1002/jcc.540160303 · Cited by 1,055
A series of PDB-related databanks for everyday needs
Touw, W. G., Baakman, C., Black, J., te Beek, T. A. H., Krieger, E., Joosten, R. P., & Vriend, G. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1028 · Cited by 935
Cited by
Cerutti, G., Guo, Y., Zhou, T., Gorman, J., Lee, M., Rapp, M., Reddem, E. R., Yu, J., Bahna, F., Bimela, J., et al. (2021) · Cell Host & Microbe · doi:10.1016/j.chom.2021.03.005 · Cited by 519
Structure and dynamics of the active human parathyroid hormone receptor-1
Zhao, L.-H., Ma, S., Sutkeviciute, I., Shen, D.-D., Zhou, X. E., de Waal, P. W., Li, C.-Y., Kang, Y., Clark, L. J., Jean-Alphonse, F. G., et al. (2019) · Science · doi:10.1126/science.aav7942 · Cited by 256
Human GLP-1 receptor transmembrane domain structure in complex with allosteric modulators
Song, G., Yang, D., Wang, Y., de Graaf, C., Zhou, Q., Jiang, S., Liu, K., Cai, X., Dai, A., Lin, G., et al. (2017) · Nature · doi:10.1038/nature22378 · Cited by 241
Jones, E. M., Lubock, N. B., Venkatakrishnan, A., Wang, J., Tseng, A. M., Paggi, J. M., Latorraca, N. R., Cancilla, D., Satyadi, M., Davis, J. E., et al. (2020) · eLife · doi:10.7554/elife.54895 · Cited by 168
An atlas of protein homo-oligomerization across domains of life
Schweke, H., Pacesa, M., Levin, T., Goverde, C. A., Kumar, P., Duhoo, Y., Dornfeld, L. J., Dubreuil, B., Georgeon, S., Ovchinnikov, S., et al. (2024) · Cell · doi:10.1016/j.cell.2024.01.022 · Cited by 144
Metadata
- Authors
- Mitternacht, S.
- Venue
- F1000Research
- Publisher
- F1000 Research Ltd
- Published
- 2016-02-18
- Volume
- 5
- Pages
- 189
- ISSN
- 2046-1402 (ISSN-L)
- OpenAlex
- W2253581743
- Cited by
- 555
- References
- 19
- FWCI
- 7.22
- Type
- journal article
- Language
- en
- Open access
- gold
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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