The DOI matches its Crossref record; 41 of the 41 references it cites were found in a registry or an index.
c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis
Open accessAbstract
Modern approaches for bioremediation of radionuclide contaminated environments are based on the ability of microorganisms to effectively catalyze changes in the oxidation states of metals that in turn influence their solubility. Although microbial metal reduction has been identified as an effective means for immobilizing highly-soluble uranium(VI) complexes in situ, the biomolecular mechanisms of U(VI) reduction are not well understood. Here, we show that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracellular UO(2) nanoparticles. In particular, the outer membrane (OM) decaheme cytochrome MtrC (metal reduction), previously implicated in Mn(IV) and Fe(III) reduction, directly transferred electrons to U(VI). Additionally, deletions of mtrC and/or omcA significantly affected the in vivo U(VI) reduction rate relative to wild-type MR-1. Similar to the wild-type, the mutants accumulated UO(2) nanoparticles extracellularly to high densities in association with an extracellular polymeric substance (EPS). In wild-type cells, this UO(2)-EPS matrix exhibited glycocalyx-like properties and contained multiple elements of the OM, polysaccharide, and heme-containing proteins. Using a novel combination of methods including synchrotron-based X-ray fluorescence microscopy and high-resolution immune-electron microscopy, we demonstrate a close association of the extracellular UO(2) nanoparticles with MtrC and OmcA (outer membrane cytochrome). This is the first study to our knowledge to directly localize the OM-associated cytochromes with EPS, which contains biogenic UO(2) nanoparticles. In the environment, such association of UO(2) nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O(2) or transport in soils and sediments.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Dissimilatory Fe(III) and Mn(IV) Reduction
Lovley, D. R., Holmes, D. E., & Nevin, K. P. (2004) · Advances in Microbial Physiology · doi:10.1016/s0065-2911(04)49005-5 · Cited by 1,471
Microbial reduction of uranium
Lovley, D. R., Phillips, E. J. P., Gorby, Y. A., & Landa, E. R. (1991) · Nature · doi:10.1038/350413a0 · Cited by 1,446
Bacterial Manganese Reduction and Growth with Manganese Oxide as the Sole Electron Acceptor
Myers, C. R., & Nealson, K. H. (1988) · Science · doi:10.1126/science.240.4857.1319 · Cited by 1,365
Thomas, P. E., Ryan, D., & Levin, W. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90067-1 · Cited by 1,057
Anderson, R. T., Vrionis, H. A., Ortiz-Bernad, I., Resch, C. T., Long, P. E., Dayvault, R., Karp, K., Marutzky, S., Metzler, D. R., Peacock, A., et al. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.10.5884-5891.2003 · Cited by 924
IRON AND MANGANESE IN ANAEROBIC RESPIRATION: Environmental Significance, Physiology, and Regulation
Nealson, K. H., & Saffarini, D. (1994) · Annual Review of Microbiology · doi:10.1146/annurev.mi.48.100194.001523 · Cited by 907
Self-citationA role for excreted quinones in extracellular electron transfer
Newman, D. K., & Kolter, R. (2000) · Nature · doi:10.1038/35011098 · Cited by 884
Link, A. J., Phillips, D., & Church, G. M. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.20.6228-6237.1997 · Cited by 874
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis
Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., Eisen, J. A., Seshadri, R., Ward, N., Methe, B., et al. (2002) · Nature Biotechnology · doi:10.1038/nbt749 · Cited by 859
Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments
Methé, B. A., Nelson, K. E., Eisen, J. A., Paulsen, I. T., Nelson, W., Heidelberg, J. F., Wu, D., Wu, M., Ward, N., Beanan, M. J., et al. (2003) · Science · doi:10.1126/science.1088727 · Cited by 710
Reduction of uranium by Desulfovibrio desulfuricans
Lovley, D. R., & Phillips, E. J. (1992) · Applied and Environmental Microbiology · doi:10.1128/aem.58.3.850-856.1992 · Cited by 620
Myers, C. R., & Myers, J. M. (1992) · Journal of Bacteriology · doi:10.1128/jb.174.11.3429-3438.1992 · Cited by 419
LLOYD, J. R., LEANG, C., MYERSON, A. L. H., COPPI, M. V., CUIFO, S., METHE, B., SANDLER, S. J., & LOVLEY, D. R. (2003) · Biochemical Journal · doi:10.1042/bj20020597 · Cited by 373
Nevin, K. P., & Lovley, D. R. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.5.2294-2299.2002 · Cited by 359
Reduction of uranium by cytochrome c3 of Desulfovibrio vulgaris
Lovley, D. R., Widman, P. K., Woodward, J. C., & Phillips, E. J. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.11.3572-3576.1993 · Cited by 356
Gorby, Y. A., & Lovley, D. R. (1992) · Environmental Science & Technology · doi:10.1021/es00025a026 · Cited by 347
Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium
Fredrickson, J. K., Zachara, J. M., Kennedy, D. W., Duff, M. C., Gorby, Y. A., Li, S.-M. W., & Krupka, K. M. (2000) · Geochimica et Cosmochimica Acta · doi:10.1016/s0016-7037(00)00397-5 · Cited by 341
Self-citationLiu, C., Gorby, Y. A., Zachara, J. M., Fredrickson, J. K., & Brown, C. F. (2002) · Biotechnology and Bioengineering · doi:10.1002/bit.10430 · Cited by 335
Self-citationBeliaev, A. S., Saffarini, D. A., McLaughlin, J. L., & Hunnicutt, D. (2001) · Molecular Microbiology · doi:10.1046/j.1365-2958.2001.02257.x · Cited by 313
Self-citationBioremediation of uranium contamination with enzymatic uranium reduction
Lovley, D. R., & Phillips, E. J. P. (1992) · Environmental Science & Technology · doi:10.1021/es00035a023 · Cited by 311
Reduction of Fe(III), Cr(VI), U(VI), and Tc(VII) by Deinococcus radiodurans R1
Fredrickson, J. K., Kostandarithes, H. M., Li, S. W., Plymale, A. E., & Daly, M. J. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.5.2006-2011.2000 · Cited by 311
Self-citationBeliaev, A. S., & Saffarini, D. A. (1998) · Journal of Bacteriology · doi:10.1128/.180.23.6292-6297.1998 · Cited by 277
Self-citationShi, L., Chen, B., Wang, Z., Elias, D. A., Mayer, M. U., Gorby, Y. A., Ni, S., Lower, B. H., Kennedy, D. W., Wunschel, D. S., et al. (2006) · Journal of Bacteriology · doi:10.1128/jb.01966-05 · Cited by 260
Self-citationBeliaev, A. S., Klingeman, D. M., Klappenbach, J. A., Wu, L., Romine, M. F., Tiedje, J. M., Nealson, K. H., Fredrickson, J. K., & Zhou, J. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.20.7138-7145.2005 · Cited by 227
Self-citationReduction of U(VI) to U(IV) by indigenous bacteria in contaminated ground water
Abdelouas, A., Lu, Y., Lutze, W., & Nuttall, H. E. (1998) · Journal of Contaminant Hydrology · doi:10.1016/s0169-7722(98)00134-x · Cited by 206
Meyer, T. E., Tsapin, A. I., Vandenberghe, I., De Smet, L., Frishman, D., Nealson, K. H., Cusanovich, M. A., & Van Beeumen, J. J. (2004) · OMICS: A Journal of Integrative Biology · doi:10.1089/153623104773547499 · Cited by 199
Seeliger, S., Cord-Ruwisch, R., & Schink, B. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.14.3686-3691.1998 · Cited by 195
Fredrickson, J. K., Zachara, J. M., Kennedy, D. W., Liu, C., Duff, M. C., Hunter, D. B., & Dohnalkova, A. (2002) · Geochimica et Cosmochimica Acta · doi:10.1016/s0016-7037(02)00928-6 · Cited by 186
Self-citationElemental and Redox Analysis of Single Bacterial Cells by X-ray Microbeam Analysis
Kemner, K. M., Kelly, S. D., Lai, B., Maser, J., O'Loughlin, E. J., Sholto-Douglas, D., Cai, Z., Schneegurt, M. A., Kulpa, C. F., & Nealson, K. H. (2004) · Science · doi:10.1126/science.1103524 · Cited by 177
Self-citationGlobal Transcriptional Profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) Reduction
Bencheikh-Latmani, R., Williams, S. M., Haucke, L., Criddle, C. S., Wu, L., Zhou, J., & Tebo, B. M. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.7453-7460.2005 · Cited by 160
Myers, C. R., & Myers, J. M. (1997) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/s0005-2736(97)00034-5 · Cited by 143
Wan, X., VerBerkmoes, N. C., McCue, L. A., Stanek, D., Connelly, H. M., Hauser, L., Wu, L., Liu, X., Yan, T., Leaphart, A. B., et al. (2004) · Journal of Bacteriology · doi:10.1128/jb.186.24.8385-8400.2004 · Cited by 133
Reduction of Actinides and Fission Products by Fe(III)-Reducing Bacteria
Lloyd, J. R., Chesnes, J., Glasauer, S., Bunker, D. J., Livens, F. R., & Lovley, D. R. (2002) · Geomicrobiology Journal · doi:10.1080/014904502317246200 · Cited by 132
Structure and carbohydrate analysis of the exopolysaccharide capsule of Pseudomonas putida G7
Kachlany, S. C., Levery, S. B., Kim, J. S., et al. (2001) · Environmental Microbiology · doi:10.1046/j.1462-2920.2001.00248.x · Cited by 132
Cell surface exposure of the outer membrane cytochromes of Shewanella oneidensis MR-1
Myers, C. R., & Myers, J. M. (2003) · Letters in Applied Microbiology · doi:10.1046/j.1472-765x.2003.01389.x · Cited by 116
Localization and Solubilization of the Iron(III) Reductase of Geobacter sulfurreducens
Gaspard, S., Vazquez, F., & Holliger, C. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.9.3188-3194.1998 · Cited by 112
Solubilization of Plutonium Hydrous Oxide by Iron-Reducing Bacteria
Rusin, P. A., Quintana, L., Brainard, J. R., Strietelmeier, B. A., Tait, C. D., Ekberg, S. A., Palmer, P. D., Newton, T. W., & Clark, D. L. (1994) · Environmental Science & Technology · doi:10.1021/es00058a021 · Cited by 101
Myers, J. M., & Myers, C. R. (1998) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/s0005-2736(98)00111-4 · Cited by 94
Bouhenni, R., Gehrke, A. R., & Saffarini, D. A. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.8.4935-4937.2005 · Cited by 94
Self-citationDobbin, P. S., Butt, J. N., Powell, A. K., REID, G. A., & Richardson, D. J. (1999) · Biochemical Journal · doi:10.1042/bj3420439 · Cited by 72
Interaction between uranium and the cytochrome c 3 of Desulfovibrio desulfuricans strain G20
Payne, R. B., Casalot, L., Rivere, T., Terry, J., Larsen, L., Giles, B. J., & Wall, J. D. (2004) · Archives of Microbiology · doi:10.1007/s00203-004-0671-7 · Cited by 48
Cited by
Singh, J., Dutta, T., Kim, K.-H., Rawat, M., Samddar, P., & Kumar, P. (2018) · Journal of Nanobiotechnology · doi:10.1186/s12951-018-0408-4 · Cited by 2,700
Biological synthesis of metal nanoparticles by microbes
Narayanan, K. B., & Sakthivel, N. (2010) · Advances in Colloid and Interface Science · doi:10.1016/j.cis.2010.02.001 · Cited by 1,918
Ijaz, I., Gilani, E., Nazir, A., & Bukhari, A. (2020) · Green Chemistry Letters and Reviews · doi:10.1080/17518253.2020.1802517 · Cited by 992
Nanotechnology, nanotoxicology, and neuroscience
Suh, W. H., Suslick, K. S., Stucky, G. D., & Suh, Y.-H. (2009) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2008.09.009 · Cited by 406
Alignment of the c -Type Cytochrome OmcS along Pili of Geobacter sulfurreducens
Leang, C., Qian, X., Mester, T., & Lovley, D. R. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00023-10 · Cited by 342
Metadata
- Authors
- Marshall, M. J., Beliaev, A. S., Dohnalkova, A. C., Kennedy, D. W., Shi, L., Wang, Z., Boyanov, M. I., Lai, B., Kemner, K. M., McLean, J. S., Reed, S. B., Culley, D. E., Bailey, V. L., Simonson, C. J., Saffarini, D. A., Romine, M. F., Zachara, J. M., & Fredrickson, J. K.
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2006-08-08
- Volume
- 4
- Issue
- 8
- Pages
- e268
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- OpenAlex
- W2006028467
- Cited by
- 368
- References
- 41
- FWCI
- 16.07
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.