A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

De Santa, Francesca, Barozzi, Iros, Mietton, Flore, Ghisletti, Serena, Polletti, Sara, Tusi, Betsabeh Khoramian, Muller, Heiko, Ragoussis, Jiannis +2 more·2010·PLoS Biology
DOI 10.1371/journal.pbio.1000384

Cited by (934)

Items 801–900 of 934

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  39. Additional file 7 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
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  40. Additional file 3 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  41. Additional file 1 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  42. Additional file 3 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Iwata, Shigeru, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  43. Additional file 13 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  44. Additional file 16 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  45. Additional file 7 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  46. Additional file 6 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Shigeru Iwata, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  47. Additional file 1 of Mechanisms of enhancer action: the known and the unknown
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  48. Additional file 5 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
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  50. Additional file 8 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Shigeru Iwata, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  51. Additional file 3 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  52. Additional file 9 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  53. Additional file 8 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  54. Additional file 1 of A comprehensive prognostic and immune analysis of enhancer RNA identifies IGFBP7-AS1 as a novel prognostic biomarker in Uterine Corpus Endometrial Carcinoma
    Liu, Jinhui, Yin, Jian, Wang, Yuanyuan, Cai, Lixin, Geng, Rui, Du, Mulong, Zhong, Zihang, Senmiao Ni, Huang, Xiaohao, Yu, Hao et al. · 2022 · Figshare
  55. Additional file 1 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  56. Additional file 4 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  57. Additional file 2 of Intergenic RNA mainly derives from nascent transcripts of known genes
    Agostini, Federico, Julian A. Zagalak, Jan Attig, Jernej Ule, Nicholas M. Luscombe · 2021 · Figshare
  58. Additional file 5 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Edward J. Rice, Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  59. Additional file 1 of LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions
    Maša Roller, Ericca L. Stamper, Diego Villar, Osagie G. Izuogu, Martin, Fergal, Aisling M. Redmond, Raghavendra Ramachanderan, Louise Harewood, Duncan T. Odom, Flicek, Paul · 2021 · Figshare
  60. Additional file 2 of A comprehensive prognostic and immune analysis of enhancer RNA identifies IGFBP7-AS1 as a novel prognostic biomarker in Uterine Corpus Endometrial Carcinoma
    Liu, Jinhui, Yin, Jian, Wang, Yuanyuan, Cai, Lixin, Geng, Rui, Du, Mulong, Zhong, Zihang, Senmiao Ni, Huang, Xiaohao, Yu, Hao et al. · 2022 · Figshare
  61. Additional file 12 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  62. Additional file 6 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  63. Additional file 8 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  64. Additional file 21 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  65. Additional file 4 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Iwata, Shigeru, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  66. Additional file 15 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  67. Additional file 17 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  68. Additional file 10 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  69. Additional file 20 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  70. Additional file 2 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  71. Additional file 6 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  72. Additional file 14 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  73. Additional file 18 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  74. Additional file 5 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Shigeru Iwata, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  75. Additional file 4 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
  76. Additional file 1 of Intergenic RNA mainly derives from nascent transcripts of known genes
    Agostini, Federico, Julian A. Zagalak, Jan Attig, Jernej Ule, Nicholas M. Luscombe · 2021 · Figshare
  77. Additional file 1 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Iwata, Shigeru, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  78. Additional file 2 of Enhancer RNA commits osteogenesis via microRNA-3129 expression in human bone marrow-derived mesenchymal stem cells
    Anh Phuong Nguyen, Kaoru Yamagata, Iwata, Shigeru, Gulzhan Trimova, Tong Zhang, Yu Shan, Nguyen, Mai-Phuong, Koshiro Sonomoto, Shingo Nakayamada, Kato, Shigeaki et al. · 2022 · Figshare
  79. Additional file 19 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  80. Additional file 3 of A comprehensive prognostic and immune analysis of enhancer RNA identifies IGFBP7-AS1 as a novel prognostic biomarker in Uterine Corpus Endometrial Carcinoma
    Liu, Jinhui, Yin, Jian, Wang, Yuanyuan, Cai, Lixin, Geng, Rui, Du, Mulong, Zhong, Zihang, Senmiao Ni, Huang, Xiaohao, Yu, Hao et al. · 2022 · Figshare
  81. Additional file 8 of Global analysis of expression, maturation and subcellular localization of mouse liver transcriptome identifies novel sex-biased and TCPOBOP-responsive long non-coding RNAs
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  82. Additional file 11 of Constructing eRNA-mediated gene regulatory networks to explore the genetic basis of muscle and fat-relevant traits in pigs
    Wang, Chao, Choulin Chen, Lei, Bowen, Shenghua Qin, Zhang, Yuanyuan, Li, Kui, Zhang, Song, Liu, Yuwen · 2024 · Figshare
  83. Additional file 7 of Identification and prediction of developmental enhancers in sea urchin embryos
    César Arenas‐Mena, Sofija Miljovska, Rice, Edward J., Justin Gurges, Tanvi Shashikant, Wang, Zihe, Sevinç Ercan, Charles G. Danko · 2021 · Figshare
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