Is My Network Module Preserved and Reproducible?

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Items 101–200 of 1,002

1. Tau Pathology Drives Dementia Risk-Associated Gene Networks toward Chronic Inflammatory States and Immunosuppression
   Rexach, Jessica E., Polioudakis, Damon, Yin, Anna, Swarup, Vivek, Chang, Timothy S., Nguyen, Tam, Sarkar, Arjun, Chen, Lawrence, Huang, Jerry, Lin, Li-Chun et al. · 2020 · Cell Reports
2. Alteration in basal and depolarization induced transcriptional network in iPSC derived neurons from Timothy syndrome
   Tian, Yuan, Voineagu, Irina, Paşca, Sergiu P, Won, Hyejung, Chandran, Vijayendran, Horvath, Steve, Dolmetsch, Ricardo E, Geschwind, Daniel H · 2014 · Genome Medicine
3. A System-Level Transcriptomic Analysis of Schizophrenia Using Postmortem Brain Tissue Samples
   Roussos, Panos, Katsel, Pavel, Davis, Kenneth L., Siever, Larry J., Haroutunian, Vahram · 2012 · Archives of General Psychiatry
4. Pan-cancer analysis identifies telomerase-associated signatures and cancer subtypes
   Zhenhua Luo, Weixu Wang, Feng Li, Zhou Songyang, Xuyang Feng, Changchang Xin, Zhiming Dai, Yuanyan Xiong · 2019 · Molecular Cancer
5. A gene co-expression network-based analysis of multiple brain tissues reveals novel genes and molecular pathways underlying major depression
   Zachary F. Gerring, Eric R. Gamazon, Eske M. Derks · 2019 · PLoS Genetics
6. Systems-based approaches to cardiovascular disease
   William Robb MacLellan, Yibin Wang, Aldons Jake Lusis · 2012 · Nature Reviews Cardiology
7. Transcriptome-wide mega-analyses reveal joint dysregulation of immunologic genes and transcription regulators in brain and blood in schizophrenia
   Jonathan Hess, Daniel S. Tylee, Rahul Barve, Simone de Jong, Roel A. Ophoff, Nishantha Kumarasinghe, Paul A. Tooney, Ulrich Schall, Erin J. Gardiner, Natalie Jane Beveridge et al. · 2016 · Schizophrenia Research
8. Protein homeostasis of a metastable subproteome associated with Alzheimer’s disease
   Rishika Kundra, Prajwal Ciryam, Richard I. Morimoto, Christopher Martin Dobson, Michele Vendruscolo · 2017 · Proceedings of the National Academy of Sciences
9. Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers
   Pramparo, Tiziano, Lombardo, Michael V, Campbell, Kathleen, Barnes, Cynthia Carter, Marinero, Steven, Solso, Stephanie, Young, Julia, Mayo, Maisi, Dale, Anders, Ahrens‐Barbeau, Clelia et al. · 2015 · Molecular Systems Biology
10. Rare and common epilepsies converge on a shared gene regulatory network providing opportunities for novel antiepileptic drug discovery
    Andrée Delahaye‐Duriez, Prashant Kumar Srivastava, Kirill Shkura, Sarah R. Langley, Liisi Laaniste, Aida Moreno‐Moral, Bénédicte Danis, Manuela Mazzuferi, Patrik Foerch, Elena V. Gazina et al. · 2016 · Genome biology
11. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns
    Alexander S. Mikheyev, Timothy A. Linksvayer · 2015 · eLife
12. Coexpression network architecture reveals the brain-wide and multiregional basis of disease susceptibility
    Christopher Hartl, Gokul Ramaswami, William G. Pembroke, Sandrine Muller, Greta Pintacuda, Ashis Saha, Princy Parsana, Alexis J. Battle, Kasper Lage, Daniel H. Geschwind · 2021 · Nature Neuroscience
13. Inferring protein expression changes from mRNA in Alzheimer’s dementia using deep neural networks
    Shinya Tasaki, Jishu Xu, Denis R. Avey, Lynnaun Johnson, Vladislav Petyuk, Robert J. Dawe, David Alan Bennett, Yanling Wang, Chris Gaiteri · 2022 · Nature Communications
14. Glial gene networks associated with alcohol dependence
    Erickson, Emma K., Blednov, Yuri A., Harris, R. Adron, Mayfield, R. Dayne · 2019 · Scientific Reports
15. Exploring the Transcriptome of Ciliated Cells Using In Silico Dissection of Human Tissues
    Alexander E. Ivliev, Peter A.C. ’t Hoen, Willeke van Roon‐Mom, Dorien J.M. Peters, Marina G. Sergeeva · 2012 · PLoS ONE
16. Pan-cancer analysis reveals cooperativity of both strands of microRNA that regulate tumorigenesis and patient survival
    Ramkrishna Mitra, Clare M. Adams, Wei Jiang, Evan J. Greenawalt, Christine M. Eischen · 2020 · Nature Communications
17. Understanding patient outcomes after acute respiratory distress syndrome: identifying subtypes of physical, cognitive and mental health outcomes
    Brown, Samuel M, Wilson, Emily L, Presson, Angela P, Dinglas, Victor D, Greene, Tom, Hopkins, Ramona O, Needham, Dale M · 2017 · Thorax
18. A cross-species proteomic map reveals neoteny of human synapse development
    Wang, Li, Pang, Kaifang, Zhou, Li, Cebrián-Silla, Arantxa, González-Granero, Susana, Wang, Shaohui, Bi, Qiuli, White, Matthew L., Ho, Brandon, Li, Jiani et al. · 2023 · Nature
19. A cross-species proteomic map reveals neoteny of human synapse development
    Wang, Li, Pang, Kaifang, Zhou, Li, Cebrián-Silla, Arantxa, González-Granero, Susana, Wang, Shaohui, Bi, Qiuli, White, Matthew L., Ho, Brandon, Li, Jiani et al. · 2022
20. Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings
    Isabel Almudí, Joel Vizueta, Christopher D. R. Wyatt, Alex de Mendoza, Ferdinand Marlétaz, Panos Firbas, Roberto Feuda, Giulio Masiero, Patricia Medina-Burgos, Ana Alcaina‐Caro et al. · 2020 · Nature Communications
21. ELAVL2-regulated transcriptional and splicing networks in human neurons link neurodevelopment and autism
    Stefano Berto, Noriyoshi Usui, Geneviève Konopka, Brent L. Fogel · 2016 · Human Molecular Genetics
22. DNA methylation modules associate with incident cardiovascular disease and cumulative risk factor exposure
    Kenneth E. Westerman, Paola Sebastiani B, Paul F. Jacques, Simin Liu, Dawn Lisa DeMeo, José María Ordovás · 2019 · Clinical Epigenetics
23. Microbiome structure and function in rhizosphere of Jerusalem artichoke grown in saline land
    Yang Yue, Tianyun Shao, Xiaohua Long, Tengfei He, Xiumei Gao, Zhaosheng Zhou, Zhaopu Liu, Zed Rengel · 2020 · The Science of The Total Environment
24. Gene networks associated with conditional fear in mice identified using a systems genetics approach
    Christopher C Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin et al. · 2011 · BMC Systems Biology
25. Identification of Conserved Proteomic Networks in Neurodegenerative Dementia
    Swarup, Vivek, Chang, Timothy S., Duong, Duc M., Dammer, Eric B., Dai, Jingting, Lah, James J., Johnson, Erik C.B., Seyfried, Nicholas T., Levey, Allan I., Geschwind, Daniel H. · 2020 · Cell Reports
26. Identification of conserved proteomic networks in neurodegenerative dementia
    Swarup, Vivek, Chang, Timothy S., Duong, Duc M., Dammer, Eric B., Lah, James J., Johnson, Erik E.C.B., Seyfried, Nicholas T., Levey, Allan I., Geschwind, Daniel H. · 2019
27. Evolutionary conservation and divergence of the human brain transcriptome
    William G. Pembroke, Christopher Hartl, Daniel H. Geschwind · 2021 · Genome biology
28. The Landscape of Circular RNA Expression in the Human Brain
    Akira Gokoolparsadh, Firoz Anwar, Irina Voineagu · 2019 · Biological Psychiatry
29. Weighted Gene Co-expression Network Analysis of Endometriosis and Identification of Functional Modules Associated With Its Main Hallmarks
    Mohammad Reza Bakhtiarizadeh, Batool Hosseinpour, Maryam Shahhoseini, Arthur Korte, Peyman Gifani · 2018 · Frontiers in Genetics
30. Identification of candidate miRNA biomarkers for pancreatic ductal adenocarcinoma by weighted gene co-expression network analysis
    Matteo Giulietti, Giulia Occhipinti, Giovanni Principato, Francesco Piva · 2017 · Cellular Oncology
31. Transcriptome of iPSC-derived neuronal cells reveals a module of co-expressed genes consistently associated with autism spectrum disorder
    Karina Griesi‐Oliveira, Mariana Soares Fogo, Bruna Garbes Gonçalves Pinto, Aline Yasuda Alves, Ângela May Suzuki, Andressa Gois Morales, Suzana Ezquina, Julio Sosa, Gavin J. Sutton, Daniele Yumi Sunaga et al. · 2020 · Molecular Psychiatry
32. (Differential) Co-Expression Analysis of Gene Expression: A Survey of Best Practices
    Hussain Ahmed Chowdhury, Dhruba K. Bhattacharyya, Jugal Kumar Kalita · 2019 · IEEE Transactions on Computational Biology and Bioinformatics
33. Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases
    Akul Singhania, Christine M. Graham, Leona Gabryšová, Lúcia Moreira-Teixeira, Evangelos Stavropoulos, Jonathan M. Pitt, Probir Chakravarty, Annika Warnatsch, William J. Branchett, Laura Conejero et al. · 2019 · Nature Communications
34. Blood transcriptomic comparison of individuals with and without autism spectrum disorder: A combined‐samples mega‐analysis
    Daniel S. Tylee, Jonathan Hess, Thomas P. Quinn, Rahul Barve, Hailiang Huang, Yanli Zhang‐James, Jeffrey Chang, Boryana S. Stamova, Frank R. Sharp, Irva Hertz‐Picciotto et al. · 2016 · American Journal of Medical Genetics Part B Neuropsychiatric Genetics
35. Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes
    Yin Li, Wenqin Wang, Yaping Feng, Min Tu, Peter E. Wittich, Nicholas J. Bate, Joachim W. Messing · 2018 · Plant Biotechnology Journal
36. Integrative genomics approach identifies conserved transcriptomic networks in Alzheimer’s disease
    Morabito, Samuel, Miyoshi, Emily, Michael, Neethu, Swarup, Vivek · 2020 · Human Molecular Genetics
37. Identification of Biomarkers Associated With Pathological Stage and Prognosis of Clear Cell Renal Cell Carcinoma by Co-expression Network Analysis
    Chen Liang, Lushun Yuan, Kaiyu Qian, Guofeng Qian, Yuan Zhu, Chin‐Lee Wu, Han C. Dan, Yu Xiao, Xinghuan Wang · 2018 · Frontiers in Physiology
38. A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets
    Scott C. Ritchie, Stephen C. Watts, Liam G. Fearnley, Kathryn E. Holt, Gad Abraham, Michael Inouye · 2016 · Cell Systems
39. Systems analysis of human brain gene expression: mechanisms for HIV-associated neurocognitive impairment and common pathways with Alzheimer’s disease
    Andrew J. Levine, Jeremy A. Miller, Paul Shapshak, Benjamin B. Gelman, Elyse J. Singer, Charles H. Hinkin, Deborah Commins, Susan Morgello, Igor Grant, Steve Horvath · 2013 · BMC Medical Genomics
40. Selection for Drinking in the Dark Alters Brain Gene Coexpression Networks
    Ovidiu D. Iancu, Denesa L. Oberbeck, Priscila Darakjian, Pamela Metten, Shannon K. McWeeney, John C. Crabbe, ROBERT J. HITZEMANN · 2013 · Alcoholism Clinical and Experimental Research
41. Candidate genes in gastric cancer identified by constructing a weighted gene co-expression network
    Jian Chen, Xiuwen Wang, Bing Hu, Yifu He, Xiaojun Qian, Wei Wang · 2018 · PeerJ
42. Systems analysis of primary Sjögren's syndrome pathogenesis in salivary glands identifies shared pathways in human and a mouse model
    Steve Horvath, Abu N M Nazmul-Hossain, Rodney Pollard, Frans G. M. Kroese, Arjan Vissink, Cees G. M. Kallenberg, Fred KL Spijkervet, Hendrika Bootsma, Sara A. Michie, Sven‐Ulrik Gorr et al. · 2012 · Arthritis Research & Therapy
43. Gene Expression and Pharmacodynamic Changes in 1,760 Systemic Lupus Erythematosus Patients From Two Phase III Trials of BAFF Blockade With Tabalumab
    Robert W. Hoffman, Joan T. Merrill, Marta Eugenia Alarcón-Riquelme, Michelle Petri, Ernst R. Dow, Eric Nantz, Laura K. Nisenbaum, Krista Marie Schroeder, Wendy J. Komocsar, Narayanan B. Perumal et al. · 2016 · Arthritis & Rheumatology
44. Longitudinal multi-omics analysis identifies early blood-based predictors of anti-TNF therapy response in inflammatory bowel disease
    Neha Mishra, Konrad Aden, Johanna I. Blase, Nathan Baran, Dora Bordoni, Florian Tran, Claudio Cim Conrad, Diana Avalos, Charlot Jaeckel, Michael Scherer et al. · 2022 · Genome Medicine
45. Integrative Analysis of Hippocampus Gene Expression Profiles Identifies Network Alterations in Aging and Alzheimer’s Disease
    Lanke, Vinay, Moolamalla, S. T. R., Roy, Dipanjan, Vinod, P. K. · 2018 · Frontiers in Aging Neuroscience
46. Characterization of transcriptional modules related to fibrosing-NAFLD progression
    Yi Lou, Guoyan Tian, Yu Song, Yinlan Liu, Yidan Chen, Junping Shi, Jin Yang · 2017 · Scientific Reports
47. Limited sex-biased neural gene expression patterns across strains in Zebrafish (Danio rerio)
    Ryan Y. Wong, Melissa M McLeod, John Godwin · 2014 · BMC Genomics
48. Whole-transcriptome analysis delineates the human placenta gene network and its associations with fetal growth
    Maya A. Deyssenroth, Shouneng Peng, Ke Hao, Luca Lambertini, Carmen J. Marsit, Jia Chen · 2017 · BMC Genomics
49. Differential network analysis for the identification of condition-specific pathway activity and regulation
    Gennaro Gambardella, Maria Nicoletta Moretti, Rossella De Cegli, Luca Cardone, Adriano Peron, Diego di Bernardo · 2013 · Bioinformatics
50. Modeling gene × environment interactions in PTSD using human neurons reveals diagnosis-specific glucocorticoid-induced gene expression
    Carina Seah, Michael S. Breen, Tom Rusielewicz, Heather N. Bader, Changxin Xu, Christopher J. Hunter, Barry McCarthy, P. J. Michael Deans, Mitali Chattopadhyay, Jordan Goldberg et al. · 2022 · Nature Neuroscience
51. Differential activation of immune/inflammatory response-related co-expression modules in the hippocampus across the major psychiatric disorders
    S Kim, Y Hwang, Maree J. Webster, Doheon Lee · 2015 · Molecular Psychiatry
52. Transcriptome sequencing of the choroid plexus in schizophrenia
    S Kim, Y Hwang, Doheon Lee, Maree J. Webster · 2016 · Translational Psychiatry
53. A Microglial Signature Directing Human Aging and Neurodegeneration-Related Gene Networks
    Shradha Mukherjee, Christine R. Klaus, Mihaela Pricop‐Jeckstadt, Jeremy A. Miller, Felix L. Struebing · 2019 · Frontiers in Neuroscience
54. Plasmacytoid DCs From Patients With Sjögren's Syndrome Are Transcriptionally Primed for Enhanced Pro-inflammatory Cytokine Production
    Maarten R. Hillen, Aridaman Pandit, Sofie L. M. Blokland, Sarita A. Y. Hartgring, Cornelis P. J. Bekker, Eefje Hanna Martine van der Heijden, Nila H. Servaas, Marzia Rossato, Aike Albert Kruize, Joël A. G. van Roon et al. · 2019 · Frontiers in Immunology
55. Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
    Yen‐Ju Chen, Chia-Ying Chen, Te‐Lun Mai, Chih-Fan Chuang, Yu‐Chen Chen, Sachin Kumar Gupta, Laising Yen, Yi-Da Wang, Trees‐Juen Chuang · 2020 · Genome Research
56. Integrated lipidomics and proteomics network analysis highlights lipid and immunity pathways associated with Alzheimer’s disease
    Jin Xu, Giulia Bankov, Min Gyu Kim, Asger Wretlind, Jodie Lord, Rebecca Green, Angela Hodges, Abdul Hye, Dag Aarsland, Latha Velayudhan et al. · 2020 · Translational Neurodegeneration
57. Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
    Katie L. Ovens, Brian Frank Eames, Ian McQuillan · 2021 · Frontiers in Genetics
58. Maladaptive phenotypic plasticity in cardiac muscle growth is suppressed in high‐altitude deer mice
    Jonathan P. Velotta, Catherine M. Ivy, Cole J. Wolf, Graham R. Scott, Zachary A. Cheviron · 2018 · Evolution
59. Gene expression data analysis using Hellinger correlation in weighted gene co-expression networks (WGCNA)
    Tianjiao Zhang, Garry Wong · 2022 · Computational and Structural Biotechnology Journal
60. Dystonia genes functionally converge in specific neurons and share neurobiology with psychiatric disorders
    Niccolò Emanuele Mencacci, Regina Hertfelder Reynolds, Sonia García-Ruiz, Jana Vandrovcová, Paola Forabosco, Álvaro Sánchez‐Ferrer, Viola Volpato, Juan Antonio Botía, Karishma D’Sa, Paola Forabosco et al. · 2020 · Brain
61. Atypical Neurogenesis in Induced Pluripotent Stem Cells From Autistic Individuals
    Dwaipayan Adhya, Vivek Swarup, Roland Nagy, Lucia Dutan Polit, Carole Shum, Eva P. Valencia-Alarcón, Kamila Maria Jozwik, María Andreina Méndez, Jamie Horder, Eva Loth et al. · 2020 · Biological Psychiatry
62. Cross-Comparison of Human iPSC Motor Neuron Models of Familial and Sporadic ALS Reveals Early and Convergent Transcriptomic Disease Signatures
    Ho, Ritchie, Workman, Michael J., Mathkar, Pranav, Wu, Kathryn, Kim, Kevin J., O’Rourke, Jacqueline G., Kellogg, Mariko, Montel, Valerie, Banuelos, Maria G., Arogundade, Olubankole Aladesuyi et al. · 2021 · Cell Systems
63. Gene co-expression network reveals shared modules predictive of stage and grade in serous ovarian cancers
    Qian Sun, Haiyue Zhao, Cong Zhang, Ting Hu, Jianli Wu, Xingguang Lin, Danfeng Luo, Changyu Wang, Meng Li, Ling Xi et al. · 2017 · Oncotarget
64. Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding
    Arun Kommadath, Hua Bao, Adriano S. Arantes, Graham Stuart Plastow, Christopher Keith Tuggle, Shawn M. D. Bearson, Le Luo Guan, Paul Stothard · 2014 · BMC Genomics
65. Differential Co-Expression Network Analysis Reveals Key Hub-High Traffic Genes as Potential Therapeutic Targets for COVID-19 Pandemic
    Aliakbar Hasankhani, Abolfazl Bahrami, Negin Sheybani, Behzad Aria, Behzad Hemati, Farhang Fatehi, Hamid Ghaem Maghami Farahani, Ghazaleh Javanmard, Mahsa Rezaee, John Patrick Kastelic et al. · 2021 · Frontiers in Immunology
66. Gene Co-Expression Network Analysis for Identifying Modules and Functionally Enriched Pathways in Type 1 Diabetes
    Ignacio Riquelme Medina, Zelmina Lubovac-Pilav · 2016 · PLoS ONE
67. Neofusicoccum parvum Colonization of the Grapevine Woody Stem Triggers Asynchronous Host Responses at the Site of Infection and in the Leaves
    Mélanie Massonnet, Rosa Elia Figueroa-Balderas, Erin Galarneau, Shiho Miki, Daniel P. Lawrence, Qiang Sun, Christopher Michael Wallis, Kendra Baumgartner, Dario Cantù · 2017 · Frontiers in Plant Science
68. Transcriptomic and genetic analyses reveal potential causal drivers for intractable partial epilepsy
    Sebastian Guelfi, Juan Antonio Botía, Maria Thom, Adaikalavan Ramasamy, Marina Perona, Lee Stanyer, Lillian Martinian, Daniah Trabzuni, Colin Smith, ROBERT E. WALKER et al. · 2019 · Brain
69. GWENA: gene co-expression networks analysis and extended modules characterization in a single Bioconductor package
    Gwenaëlle G. Lemoine, Marie‐Pier Scott‐Boyer, Bathilde Ambroise, Olivier Périn, Arnaud Droit · 2021 · BMC Bioinformatics
70. Differential Activation Patterns in the Same Brain Region Led to Opposite Emotional States
    Kazuhisa Shibata, Takeo Watanabe, Mitsuo Kawato, Yuka Sasaki · 2016 · PLoS Biology
71. Assessing Concordance of Drug-Induced Transcriptional Response in Rodent Liver and Cultured Hepatocytes
    Jeffrey J. Sutherland, Robert A. Jolly, Keith M. Goldstein, James L. Stevens · 2016 · PLoS Computational Biology
72. Biological pathway expression complementation contributes to biomass heterosis in Arabidopsis
    Wenwen Liu, Guangming He, Xing Wang Deng · 2021 · Proceedings of the National Academy of Sciences
73. Integrative brain transcriptome analysis links complement component 4 and HSPA2 to the APOE ε2 protective effect in Alzheimer disease
    Rebecca Panitch, Junming Hu, Jaeyoon Chung, Congcong Zhu, Gaoyuan Meng, Weiming Xia, David Alan Bennett, Kathryn L. Lunetta, Tsuneya Ikezu, Rhoda Au et al. · 2021 · Molecular Psychiatry
74. Frontotemporal dementia: insights into the biological underpinnings of disease through gene co-expression network analysis
    Raffaele Ferrari, Paola Forabosco, Jana Vandrovcová, Juan Antonio Botía, Sebastian Guelfi, Jason D. Warren, Parastoo Momeni, Michael E. Weale, Mina Ryten, John Hardy · 2016 · Molecular Neurodegeneration
75. Transcriptomic analysis reveals abnormal muscle repair and remodeling in survivors of critical illness with sustained weakness
    Christopher J. Walsh, Jane A. E. Batt, Margaret S. Herridge, Sunita Mathur, Gary D. Bader, Pingzhao Hu, Claúdia C. dos Santos · 2016 · Scientific Reports
76. Sense of Agency Beyond Sensorimotor Process: Decoding Self-Other Action Attribution in the Human Brain
    Ryu Ohata, Tomohisa Asai, Hiroshi Kadota, Hiroaki Shigemasu, Kenji Ogawa, Hiroshi Imamizu · 2020 · Cerebral Cortex
77. Diagnosis- and Cell Type-Specific Mitochondrial Functional Pathway Signatures in Schizophrenia and Bipolar Disorder
    Jill R. Glausier, John F. Enwright, David A. Lewis · 2020 · American Journal of Psychiatry
78. Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
    Iancu, Ovidiu D., Colville, Alexandre, Oberbeck, Denesa, Darakjian, Priscila, McWeeney, Shannon K., Hitzemann, Robert · 2015 · Frontiers in Genetics
79. Differences in network controllability and regional gene expression underlie hallucinations in Parkinson’s disease
    Angeliki Zarkali, Peter McColgan, Mina Ryten, Regina Hertfelder Reynolds, Louise‐Ann Leyland, Andrew John Lees, Geraint E. Rees, Rimona Sharon Weil · 2020 · Brain
80. A common gene expression signature in Huntington’s disease patient brain regions
    Andreas Neueder, Gillian P. Bates · 2014 · BMC Medical Genomics
81. Insights From Cerebellar Transcriptomic Analysis Into the Pathogenesis of Ataxia
    Conceição Bettencourt, Mina Ryten, Paola Forabosco, Stéphanie Schorge, Joshua Hersheson, John Hardy, Henry Houlden · 2014 · JAMA Neurology
82. A Mechanistic Understanding of Allosteric Immune Escape Pathways in the HIV-1 Envelope Glycoprotein
    Anurag Sethi, Tian Jianhui, Cynthia A. Derdeyn, Bette Korber, Sandrasegaram Gnanakaran · 2013 · PLoS Computational Biology
83. Temperature-dependent vitamin D signaling regulates developmental trajectory associated with diapause in an annual killifish
    Amie Romney, Erin M. Davis, Meranda M. Corona, Josiah T. Wagner, Jason E. Podrabsky · 2018 · Proceedings of the National Academy of Sciences
84. Cocaine'omics: Genome‐wide and transcriptome‐wide analyses provide biological insight into cocaine use and dependence
    Spencer B. Huggett, Michael C. Stallings · 2019 · Addiction Biology
85. Co-expression network of neural-differentiation genes shows specific pattern in schizophrenia
    Mariana Camargo Maschietto, Ana Carolina Tahira, Renato Puga, Leandro de Araújo Lima, Daniel Mariani, Bruna da Silveira Paulsen, Paulo Silva Belmonte-de-Abreu, Henrique Cursino Vieira, Ana Cristina Victorino Krepischi, Dirce Maria Carraro et al. · 2015 · BMC Medical Genomics
86. Identification of Gene Modules and Hub Genes Involved in Mastitis Development Using a Systems Biology Approach
    Mohammad Reza Bakhtiarizadeh, Shabnam Mirzaei, Milad Norouzi, Negin Sheybani, Mohammad Sadegh Vafaei Sadi · 2020 · Frontiers in Genetics
87. CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro
    Sandra C. Silva‐Cardoso, Weiyang Tao, Chiara Angiolilli, Ana P. Lopes, Cornelis P. J. Bekker, Abhinandan Devaprasad, Barbara Giovannone, Jacob M. van Laar, Marta Cossu, Wioleta Marut et al. · 2020 · Frontiers in Immunology
88. Photosynthetic Carbon Fixation and Sucrose Metabolism Supplemented by Weighted Gene Co-expression Network Analysis in Response to Water Stress in Rice With Overlapping Growth Stages
    Xinpeng Wang, Hualong Liu, Di Zhang, Detang Zou, Jingguo Wang, Hongliang Zheng, Yan Jia, Zhaojun Qu, Bin Sun, Hongwei Zhao · 2022 · Frontiers in Plant Science
89. Sex-Specific Modulation of Gene Expression Networks in Murine Hypothalamus
    Khyobeni Mozhui, Lu Lu, William E. Armstrong, Robert W. Williams · 2012 · Frontiers in Neuroscience
90. An interaction map of circulating metabolites, immune gene networks, and their genetic regulation
    Artika P. Nath, Scott C. Ritchie, Sean Byars, Liam G. Fearnley, Aki Samuli Havulinna, Anni Joensuu, Antti J. Kangas, Pasi Soininen, Annika Wennerström, Lili A. Milani et al. · 2017 · Genome biology
91. Identifying gene coexpression networks underlying the dynamic regulation of wood‐forming tissues in Populus under diverse environmental conditions
    Matthew S. Zinkgraf, Lijun Liu, Andrew T. Groover, Vladimir Filkov · 2017 · New Phytologist
92. Comprehensive Immunoprofiling of Pediatric Zika Reveals Key Role for Monocytes in the Acute Phase and No Effect of Prior Dengue Virus Infection
    Daniela Michlmayr, Eun‐Young Kim, Adeeb H Rahman, Rohit R. Raghunathan, Seunghee Kim‐Schulze, Yan Che, Selim Kalaycı, Zeynep Hulya Gumus, Guillermina M. Kuan, Ángel Balmaseda et al. · 2020 · Cell Reports
93. An ancient, conserved gene regulatory network led to the rise of oral venom systems
    Agneesh Barua, Alexander S. Mikheyev · 2021 · Proceedings of the National Academy of Sciences
94. Assessing evolutionary and developmental transcriptome dynamics in homologous cell types
    Christian Feregrino, Patrick Tschopp · 2021 · Developmental Dynamics
95. Loss of Trem2 in microglia leads to widespread disruption of cell coexpression networks in mouse brain
    Guillermo Carbajosa, Karim Malki, Nathan Lawless, Hong Wang, John W. Ryder, Eva Wozniak, Kristie Wood, Charles A. Mein, Richard Dobson, David Andrew Collier et al. · 2018 · Neurobiology of Aging
96. Convergent abnormalities in striatal gene networks in human cocaine use disorder and mouse cocaine administration models
    Philipp Mews, Ashley M. Cunningham, Joseph R. Scarpa, Aarthi Ramakrishnan, Emily M. Hicks, Sarah Bolnick, Susanna P. Garamszegi, Li Shen, Deborah C. Mash, Eric J. Nestler · 2023 · Science Advances
97. Characterizing the neurotranscriptomic states in alternative stress coping styles
    Ryan Y. Wong, Melissa S. Lamm, John Godwin · 2015 · BMC Genomics
98. Genetic evidence for a pathogenic role for the vitamin D3 metabolizing enzyme CYP24A1 in multiple sclerosis
    Adaikalavan Ramasamy, Daniah Trabzuni, Paola Forabosco, Colin Smith, ROBERT E. WALKER, Allissa Dillman, Sigurlaug Sveinbjörnsdóttir, John Hardy, Michael E. Weale, Mina Ryten · 2013 · Multiple Sclerosis and Related Disorders
99. Discrete Molecular Classes of Ovarian Cancer Suggestive of Unique Mechanisms of Transformation and Metastases
    Nilesh Gardi, Tejaswini U. Deshpande, Swapnil C. Kamble, Sagar R. Budhe, Sharmila A. Bapat · 2013 · Clinical Cancer Research
100. Divergent gene expression networks underlie morphological diversity of abscission zones in grasses
     Yunqing Yu, Hao Hu, Andrew N. Doust, Elizabeth Anne Kellogg · 2019 · New Phytologist