Genome-Wide Analysis of KAP1 Binding Suggests Autoregulation of KRAB-ZNFs

O'Geen, Henriette, Squazzo, Sharon L, Iyengar, Sushma, Blahnik, Kim, Rinn, John L, Chang, Howard Y, Green, Roland, Farnham, Peggy J·2007·PLoS Genetics
DOI 10.1371/journal.pgen.0030089

Cited by (179)

Items 101–179 of 179

  1. Silencing of proviruses in embryonic cells: efficiency, stability and chromatin modifications
    Sharon Schlesinger, Stephen P. Goff · 2012 · EMBO Reports
  2. Inhibition of Retroviral Replication by Members of the TRIM Protein Family
    Adam J. Fletcher, Greg J. Towers · 2013 · Current topics in microbiology and immunology
  3. Interactions of ErbB4 and Kap1 Connect the Growth Factor and DNA Damage Response Pathways
    Maureen Gilmore-Hebert, Rajani Ramabhadran, David F. Stern · 2010 · Molecular Cancer Research
  4. The mouse HP1 proteins are essential for preventing liver tumorigenesis
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  5. On the relations of phase separation and Hi-C maps to epigenetics
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  6. Identity-by-Descent Mapping to Detect Rare Variants Conferring Susceptibility to Multiple Sclerosis
    Rui Lin, Jac Charlesworth, Jim M. Stankovich, Victoria M. Perreau, Matthew Arthur Brown, Bruce V. Taylor · 2013 · PLoS ONE
  7. A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing
    Sylvain Meylan, Anna C. Groner, Giovanna Ambrosini, Nirav Malani, Simon Quenneville, Nadine Zangger, Adamandia Kapopoulou, Annamaria Kauzlaric, Jacques Rougemont, Angela Ciuffi et al. · 2011 · BMC Genomics
  8. Regulation of Episomal Gene Expression by KRAB/KAP1-Mediated Histone Modifications
    Isabelle Barde, Elisa Laurenti, Sonia Verp, Anna C. Groner, Chris L. Towne, Viviane Padrun, Patrick Aebischer, Andreas Trumpp, Didier Trono · 2009 · Journal of Virology
  9. Maintaining memory of silencing at imprinted differentially methylated regions
    Hsiao P. J. Voon, Richard J. Gibbons · 2016 · Cellular and Molecular Life Sciences
  10. TRIM28 variants and Wilms' tumour predisposition
    Janna A. Hol, Illja J. Diets, Ronald R. de Krijger, Marry M. van den Heuvel‐Eibrink, Marjolijn C.J. Jongmans, Roland P. Kuiper · 2021 · The Journal of Pathology
  11. KAP1 depletion increases PML nuclear body number in concert with ultrastructural changes in chromatin
    Rosemarie Kepkay, Kathleen M. Attwood, Yael Ziv, Yosef Shiloh, Graham Dellaire · 2011 · Cell Cycle
  12. Expression of ZNF695 Transcript Variants in Childhood B-Cell Acute Lymphoblastic Leukemia
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  13. The KRAB Zinc Finger Protein RSL1 Modulates Sex-Biased Gene Expression in Liver and Adipose Tissue To Maintain Metabolic Homeostasis
    Christopher J. Krebs, Deqiang Zhang, Lei Yin, Diane M. Robins · 2013 · Molecular and Cellular Biology
  14. The KRAB Zinc Finger Protein RSL1 Regulates Sex- and Tissue-Specific Promoter Methylation and Dynamic Hormone-Responsive Chromatin Configuration
    Christopher J. Krebs, D. Schultz, Diane M. Robins · 2012 · Molecular and Cellular Biology
  15. Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs
    Michelle C. Ward, Siming Zhao, Kaixuan Luo, Bryan J. Pavlovic, Mohammad Mahdi Karimi, Matthew Stephens, Yoav Gilad · 2018 · eLife
  16. Melanoma-Associated Cancer-Testis Antigen 16 (CT16) Regulates the Expression of Apoptotic and Antiapoptotic Genes and Promotes Cell Survival
    Camilla Nylund, Pekka Rappu, Eveliina Pakula, Aleksi Heino, Laura Laato, Laura L. Elo, Pia Vihinen, Seppo O Pyrhönen, Gethin Owen, Hannu Larjava et al. · 2012 · PLoS ONE
  17. TRIM involvement in transcriptional regulation.
    F. Cammas, Konstantin Khetchoumian, P. Chambon, R. Losson · 2012 · Advances in Experimental Medicine and Biology
  18. TIF1β association with HP1 is essential for post-gastrulation development, but not for Sertoli cell functions during spermatogenesis
    Mariëlle Herzog, Olivia Wendling, Florian Guillou, Pierre Chambon, Manuel P. Mark, Régine Losson, Florence M. Cammas · 2010 · Developmental Biology
  19. Repressive histone methylation: A case study in deterministic versus stochastic gene regulation
    David B. Lyons, Stavros Lomvardas · 2014 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  20. Ligand-dependent corepressor contributes to transcriptional repression by C2H2 zinc-finger transcription factor ZBRK1 through association with KRAB-associated protein-1
    Mario R. Calderon, Mark J. Verway, R. O. Benslama, M. Birlea, Manuella Bouttier, V. Dimitrov, Sylvie Mader, John H. White · 2014 · Nucleic Acids Research
  21. Proteomic analysis of embryonic kidney development: Heterochromatin proteins as epigenetic regulators of nephrogenesis
    Gry Helene Dihazi, Olaf Jahn, Björn Tampe, Michael Zeisberg, Claudia A. Müller, Gerhard Anton Muller, Hassan Dihazi · 2015 · Scientific Reports
  22. A Minimal Set of Tissue-Specific Hypomethylated CpGs Constitute Epigenetic Signatures of Developmental Programming
    Alejandro Colaneri, Tianyuan Wang, Vijayakanth Pagadala, Jaya Kittur, Nickolas G. Staffa, Shyamal D. Peddada, ELVIRA M. ISGANAITIS, Mary‐Elizabeth Patti, Lutz Birnbaumer · 2013 · PLoS ONE
  23. A mitofusin 2/HIF1α axis sets a maturation checkpoint in regenerating skeletal muscle
    Xun Wang, Yuemeng Jia, Jiawei Zhao, Nicholas P. Lesner, Cameron J. Menezes, Spencer D. Shelton, Siva Sai Krishna Venigalla, Jian Xu, Chunyu Cai, Prashant Mishra · 2022 · Journal of Clinical Investigation
  24. Kruppel-associated box (KRAB) proteins in the adaptive immune system
    Francesca R. Santoni de Sio · 2014 · Nucleus
  25. KRAB zinc-finger proteins localise to novel KAP1-containing foci that are adjacent to PML nuclear bodies
    S. Briers, C. Crawford, W. Bickmore, Heidi G. E. Sutherland · 2009 · Journal of Cell Science
  26. Methylomics of breast cancer: Seeking epimarkers in peripheral blood of young subjects
    Golnaz Khakpour, Mehrdad Noruzinia, Pantea Izadi, Fatemeh Karami, Mohammad Ahmadvand, Ramin Heshmat, Mahsa Mohammad Amoli, Javad Tavakkoly‐Bazzaz · 2017 · Tumor Biology
  27. Genome-Wide Analysis of Histone H3 Lysine 4 Trimethylation in Peripheral Blood Mononuclear Cells of Minimal Change Nephrotic Syndrome Patients
    Li Zhang, Yong Dai, Wujian Peng, Juanjuan Lu, Yanliang Zhang, Linxian Wang · 2009 · American Journal of Nephrology
  28. Histone Methyltransferase SETDB1 Regulates the Development of Cortical Htr3a-Positive Interneurons and Mood Behaviors
    Jiaqi Li, Shenghui Zheng, Yuhao Dong, Hao Xu, Yueyan Zhu, Jie Weng, Daijing Sun, Shunying Wang, Lei Xiao, Yan Jiang · 2022 · Biological Psychiatry
  29. Metastasis-Associated Protein Ribosomal RNA Processing 1 Homolog B (RRP1B) Modulates Metastasis through Regulation of Histone Methylation
    Minnkyong Lee, Amy M. Dworkin, Jens Lichtenberg, Shashank J. Patel, Niraj S Trivedi, Derek E. Gildea, David M. Bodine, Nigel P.S. Crawford · 2014 · Molecular Cancer Research
  30. An Integrated Workflow for Analysis of ChIP-Chip Data
    Karin Weigelt, Christoph Moehle, Thomas Stempfl, Bernhard H. F. Weber, Thomas Langmann · 2008 · BioTechniques
  31. ZNF300 Knockdown Inhibits Forced Megakaryocytic Differentiation by Phorbol and Erythrocytic Differentiation by Arabinofuranosyl Cytidine in K562 Cells
    Jin-Yang Cai, R. Gong, Feng Yan, Chunjie Yu, Lu Liu, Wei Wang, Yi Lin, Ming-Xiong Guo, Wen-Xin Li, Zan Huang · 2014 · PLoS ONE
  32. Differences among brain tumor stem cell types and fetal neural stem cells in focal regions of histone modifications and DNA methylation, broad regions of modifications, and bivalent promoters
    Sally Yoo, Mark C. Bieda · 2014 · BMC Genomics
  33. LOcating Non-Unique matched Tags (LONUT) to Improve the Detection of the Enriched Regions for ChIP-seq Data
    Rui Wang, Hang-Kai Hsu, Adam Blattler, Yisong Wang, Xun Lan, Yao Wang, Pei-Yin Hsu, Yu‐Wei Leu, Tim H.‐M. Huang, Peggy Farnham et al. · 2013 · PLoS ONE
  34. Significant Evidence of Association Between Polymorphisms in ZNF533 , Environmental Factors, and Nonsyndromic Orofacial Clefts in the Western Han Chinese Population
    Jun Wu, Qian Zheng, Yong-Qing Huang, Yan Wang, Sheng Li, Dawei Lu, Bing Shi, Huaiqing Chen · 2010 · DNA and Cell Biology
  35. Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients
    Tineke C. T. M. van der Pouw Kraan, Stephan Henrik Schirmer, Joost Ougust Fledderus, Perry D. Moerland, Josefien M. C. Baggen, Thomas A. Leyen, Anja M. van der Laan, Jan J. Piek, Niels van Royen, Anton J.G. Horrevoets · 2010 · BMC Genomics
  36. Investigating repetitively matching short sequencing reads: The enigmatic nature of H3K9me3
    Jeffrey Rosenfeld, Zhenyu Xuan, Rob DeSalle · 2009 · Epigenetics
  37. Regulator of sex-limitation KRAB zinc finger proteins modulate sex-dependent and -independent liver metabolism
    Christopher J. Krebs, Shaema M. Khan, James W. MacDonald, Meredith Sorenson, Diane M. Robins · 2009 · Physiological Genomics
  38. The impact of local genomic properties on the evolutionary fate of genes
    Yuichiro Hara, Shigehiro Kuraku · 2023 · eLife
  39. ZNF300 tight self-regulation and functioning through DNA methylation and histone acetylation
    Fengjuan Yan, Jingyi Fan, Zan Huang, Junjian Zhang · 2017 · Cell & Bioscience
  40. Heterochromatin and the molecular mechanisms of ‘parent-of-origin’ effects in animals
    Prim B. Singh · 2016 · Journal of Biosciences
  41. Binding of SU(VAR)3-9 partially depends on SETDB1 in the chromosomes of drosophila melanogaster
    Maksimov, Daniil A., Koryakov, Dmitry E. · 2019 · Cells
  42. Acetylation-Mimic Mutation of TRIM28-Lys304 to Gln Attenuates the Interaction with KRAB-Zinc-Finger Proteins and Affects Gene Expression in Leukemic K562 Cells
    Yao-Jen Chang, Steven Lin, Zhifu Kang, Bin-Jon Shen, Wen-Hai Tsai, Wen‐Ching Chen, Hsin-Pin Lu, Sheng‐Wei Lin, Shu-Yu Lin, Shu-Jen Chou et al. · 2023 · International Journal of Molecular Sciences
  43. SETDB1 deletion causes DNA demethylation and upregulation of multiple zinc-finger genes
    Yong-Kook Kang, Jaemin Eom, Byungkuk Min, J. Park · 2024 · Molecular Biology Reports
  44. The KRAB domain zinc finger protein, Zfp157 , is expressed in multiple tissues during mouse embryogenesis and in specific cells in adult mammary gland and skin
    Carrie H. Oliver, Jennifer Nichols, Christine J. Watson · 2013 · genesis
  45. A Pair of Mouse KRAB Zinc Finger Proteins Modulates Multiple Indicators of Female Reproduction1
    Christopher J. Krebs, Diane M. Robins · 2009 · Biology of Reproduction
  46. Cocaine-Induced DNA-Dependent Protein Kinase Relieves RNAP II Pausing by Promoting TRIM28 Phosphorylation and RNAP II Hyperphosphorylation to Enhance HIV Transcription
    Adhikarimayum Lakhikumar Sharma, Priya Tyagi, Meenata Khumallambam, Mudit Tyagi · 2024 · Cells
  47. Decreased Expression of ZNF554 in Gliomas is Associated with the Activation of Tumor Pathways and Shorter Patient Survival
    Andrea Balogh, Lilla Reiniger, Szabolcs Hetey, Péter Király, Eszter Toth, Katalin Karászi, Kata Juhász, Zsolt Gelencsér, Ágnes Zvara, András Szilágyi et al. · 2020 · International Journal of Molecular Sciences
  48. Chromosome 19 rearrangements in ovarian carcinomas: Zinc finger genes are particularly targeted
    Marianne Lislerud Smebye, Anita Sveen, Lisbeth Haugom, Ben Davidson, Claes Goran Trope, Ragnhild A. Lothe, Sverre Heim, Rolf Inge Skotheim, Francesca Micci · 2014 · Genes Chromosomes and Cancer
  49. Sequences encoding C2H2 zinc fingers inhibit polyadenylation and mRNA export in human cells
    Joseph Russo, Aimee Jalkanen, Adam M. Heck, Caleb M. Schmidt, Jeffrey Wilusz, Carol J. Wilusz · 2018 · Scientific Reports
  50. Developmental diseases and the hypothetical Master Development Program
    George E. Parris · 2009 · Medical Hypotheses
  51. Seizure enhances SUMOylation and zinc-finger transcriptional repression in neuronal nuclei
    Hui Rong Soon, Jessica Ruth Gaunt, Vibhavari Aysha Bansal, Clara Lenherr, Siu Kwan Sze, Toh Hean Ch’ng · 2023 · iScience
  52. Downregulated mRNA Expression of ZNF385B Is an Independent Predictor of Breast Cancer
    Ning Yan, Cong Liu, Fang Tian, Ling Wang, Yimin Wang, Zhaoying Yang, Yan Jiao, Miao He · 2021 · International Journal of Genomics
  53. Interactions of Transcription Factors with Chromatin
    Harm van Bakel · 2011 · Sub-cellular biochemistry/Subcellular biochemistry
  54. Conference Scene: Epigenetics Eh! The first formal meeting of the Canadian epigenetics community
    D. Alan Underhill, Michael J. Hendzel · 2011 · Epigenomics
  55. [Dacron and polytetrafluoroethylene aorto-bifemoral grafts].
    Lazar B Davidovic, Slobodan I. Lotina, Dusan M. Kostic, Ilija Cinara, Slobodan D. Cvetkovic, P L Stojanović, L B Velimirović, Dragan M. Markovic, Siniša Pejkić, G Pavlović · 1997 · PubMed
  56. Identification of a lipid oxygen radical defense pathway and its epigenetic control
    Francisco Sarmento Mesquita, Laurence Abrami, Romain Forey, Béatrice Kunz, Charlène Raclot, Lucie Bracq, Filipe Martins, Danica Milovanović, Evarist Planet, Olga Rosspopoff et al. · 2025 · Nature Communications
  57. Polycomb Group Protein Homeostasis in Stem Cell Identity – A Hypothetical Appraisal
    Vinagolu K. Rajasekhar · 2009 · Humana Press eBooks
  58. The transcriptional repressor Zfp125 modifies hepatic energy metabolism in response to fasting and insulin resistance
    G. W. Fernandes, Barbara M.L.C. Bocco, Tatiana L Fonseca, F. Salas-Lucia, Olivia Nickel, Samuel C Russo, B. Gereben, I. Kettelhut, A. Bianco · 2020 · bioRxiv
  59. Diversity and functional specialization of H3K9‐specific histone methyltransferases
    Dmitry E. Koryakov · 2023 · BioEssays
  60. Detection of RNA expression on whole genome analysis of Mycobacterium leprae by tiling array
    Takeshi Akama, Koichi Suzuki, Kazunari Tanigawa, Akira Kawashima, Huhehasi Wu, Kazuaki Nakamura, Moyuru Hayashi, Norihisa Ishii · 2009 · Japanese journal of leprosy
  61. On the relation of phase separation and Hi-C maps to epigenetics
    Prim B. Singh, Andrew G. Newman · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  62. Auto-methylation of the histone methyltransferase SetDB1 at its histone-mimic motifs ensures the spreading and maintenance of heterochromatin
    Qing Tang, An Zhang, Michael Sullivan, Katalin Fejes Tóth, Alexei A. Aravin · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  63. Unifying probe effect and array effect to detect transcribed fragments in tiling arrays
    Qinghui Gao, Yingmin Jia, Changfang Cheng, Fashan Yu · 2011 · Chinese Control Conference (CCC)
  64. DEVELOPMENTAL AND CELLULAR FUNCTIONS OF DELTA-CATENIN
    Dongmin Gu · 2011 · Digital Commons-TMC (Texas Medical Center)
  65. Epigenomic Actions of Environmental Arsenicals
    Paul L. Severson, Bernard W. Futscher · 2012 · Wiley eBooks
  66. The Use of High-throughput Sequencing to Investigate Histone Modifications in the Non-coding Portions of the Human Genome By
    Jeffrey Rosenfeld, Rosenfeld Jeffrey Alan · 2009 · ProQuest Demo Repository
  67. BMI1 and KAP1 interaction and function: BMI1 capped by KAP1?
    Joost van Haasteren · 2016 · MaRBLe
  68. Characterization of the Brassica napus-fungal pathogen interaction
    Bo Yang · 2009 · ERA: Education and Research Archive (University of Alberta)
  69. Discovery and Characterization of a Hidden Retroviral Enhancer by Viral DNA-capture-seq Approach
    Misaki Matsuo, Takaharu Ueno, Kazuaki Monde, Benjy J.Y. Tan, Paola Miyazato, Kyosuke Uchiyama, Saiful Islam, Hiroo Katsuya, Shinsuke Nakajima, Masahito Tokunaga et al. · 2021 · Research Square
  70. Renal tumors in children and the role of (epi)genetic predisposition
    Janna A. Hol · 2022 · Utrecht University Repository (Utrecht University)
  71. Faculty Opinions recommendation of Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs.
    Sarah Amalia Teichmann, Tzachi Hagai · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  72. Additional file 2 of TRIM proteins in hepatocellular carcinoma
    Kan Lu, Yonglong Pan, Zhao Huang, Huifang Liang, Zeyang Ding, Bixiang Zhang · 2022 · Figshare
  73. Additional file 3 of TRIM proteins in hepatocellular carcinoma
    Kan Lu, Pan, Yonglong, Zhao Huang, Liang, Huifang, Ding, Ze-yang, Bixiang Zhang · 2022 · Figshare
  74. Additional file 1 of TRIM proteins in hepatocellular carcinoma
    Kan Lu, Pan, Yonglong, Zhao Huang, Liang, Huifang, Ding, Ze-yang, Bixiang Zhang · 2022 · Figshare
  75. Etude des mécanismes moléculaires et cellulaires impliqués dans le développement de la dystrophie myotonique de type 1 à l'aide de cellules souches embryonnaires humaines porteuses de la mutation causale
    Antoine Marteyn · 2010 · theses.fr (ABES)
  76. Régulation épigénétique de la programmation des lymphocytes T CD4 par SETDB1
    Bénédicte Binet · 2017 · theses.fr (ABES)
  77. HERV-K HML-2 transcriptional profiling and splicing pattern unveiled by direct single-molecule long-read RNA sequencing
    Mariana Polychronopoulou, Eleni Kyriakou, Filiana Sotiriadou, Magda Bletsa, Gkikas Magiorkinis · 2026 · Mobile DNA
  78. BRD4 recruitment into HP1 condensates desilences transcription without erasure of repressive chromatin
    Christopher J. Brandon, Sarah Robinson-Thiewes, Mangesh H. Kaulage, Wojciech Rosikiewicz, Matthew J. Cuneo, Joseph Brett, Jindpreet Kandola, Walter H. Lang, Jonathan A. Low, Ashraf Mohammed et al. · 2026 · Nature Cell Biology
  79. Epigenetics of Pluripotency
    R. David Hawkins, Bing Ren · 2013 · Epigenetics and human health