Genetic adaptation associated with genome-doubling in autotetraploid Arabidopsis arenosa
Open accessAbstract
Genome duplication, which results in polyploidy, is disruptive to fundamental biological processes. Genome duplications occur spontaneously in a range of taxa and problems such as sterility, aneuploidy, and gene expression aberrations are common in newly formed polyploids. In mammals, genome duplication is associated with cancer and spontaneous abortion of embryos. Nevertheless, stable polyploid species occur in both plants and animals. Understanding how natural selection enabled these species to overcome early challenges can provide important insights into the mechanisms by which core cellular functions can adapt to perturbations of the genomic environment. Arabidopsis arenosa includes stable tetraploid populations and is related to well-characterized diploids A. lyrata and A. thaliana. It thus provides a rare opportunity to leverage genomic tools to investigate the genetic basis of polyploid stabilization. We sequenced the genomes of twelve A. arenosa individuals and found signatures suggestive of recent and ongoing selective sweeps throughout the genome. Many of these are at genes implicated in genome maintenance functions, including chromosome cohesion and segregation, DNA repair, homologous recombination, transcriptional regulation, and chromatin structure. Numerous encoded proteins are predicted to interact with one another. For a critical meiosis gene, ASYNAPSIS1, we identified a non-synonymous mutation that is highly differentiated by cytotype, but present as a rare variant in diploid A. arenosa, indicating selection may have acted on standing variation already present in the diploid. Several genes we identified that are implicated in sister chromatid cohesion and segregation are homologous to genes identified in a yeast mutant screen as necessary for survival of polyploid cells, and also implicated in genome instability in human diseases including cancer. This points to commonalities across kingdoms and supports the hypothesis that selection has acted on genes controlling genome integrity in A. arenosa as an adaptive response to genome doubling.
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Adaptation to WGD in autotetraploid Arabidopsis was shown to involve standing genetic variation.
“A notable example is adaptation to WGD in autotetraploid Arabidopsis, which was shown to involve standing genetic variation (Hollister et al., 2012; see also Polyploid speciation).”
From Genomics of plant speciation (2023) · cites this paper as Hollister et al., 2012
The Results (Meiosis; page unavailable) identify an ASY1 variant common in tetraploid A. arenosa but rare in diploids. The Discussion says this suggests standing variation may have contributed to tetraploid stabilization. It does not establish definitively that adaptation to whole-genome duplication involved standing variation. (LLM, conf=0.88)
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Cites
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895 · see citing works
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301 · see citing works
A draft sequence of the Neandertal genome
Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318 · see citing works
DNA double-strand breaks: signaling, repair and the cancer connection
Khanna, K. K., & Jackson, S. P. (2001) · Nature Genetics · doi:10.1038/85798 · Cited by 2,455 · see citing works
Generating samples under a Wright–Fisher neutral model of genetic variation
Hudson, R. R. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.2.337 · Cited by 2,397 · see citing works
The advantages and disadvantages of being polyploid
Comai, L. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1711 · Cited by 2,308 · see citing works
Weir, B. S. (1997) · Biometrics · doi:10.2307/2533134 · Cited by 2,263 · see citing works
Raptor, a Binding Partner of Target of Rapamycin (TOR), Mediates TOR Action
Hara, K., Maruki, Y., Long, X., Yoshino, K.-I., Oshiro, N., Sujuti, H., Tokunaga, C., Avruch, J., & Yonezawa, K. (2002) · Cell · doi:10.1016/s0092-8674(02)00833-4 · Cited by 1,810 · see citing works
The frequency of polyploid speciation in vascular plants
Wood, T. E., Takebayashi, N., Barker, M. S., Mayrose, I., Greenspoon, P. B., & Rieseberg, L. H. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0811575106 · Cited by 1,418 · see citing works
The Evolutionary Consequences of Polyploidy
Otto, S. P. (2007) · Cell · doi:10.1016/j.cell.2007.10.022 · Cited by 1,188 · see citing works
Neopolyploidy in Flowering Plants
Ramsey, J., & Schemske, D. W. (2002) · Annual Review of Ecology and Systematics · doi:10.1146/annurev.ecolsys.33.010802.150437 · Cited by 1,062 · see citing works
Genomic scans for selective sweeps using SNP dataPreprint
Nielsen, R., Williamson, S., Kim, Y., Hubisz, M. J., Clark, A. G., & Bustamante, C. D. (2005) · Genome Research · doi:10.1101/gr.4252305 · Cited by 1,024 · see citing works
Genetic and Epigenetic Mechanisms for Gene Expression and Phenotypic Variation in Plant Polyploids
Chen, Z. J. (2007) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.58.032806.103835 · Cited by 995 · see citing works
Zwenger, S. R., & Basu, C. (2010) · Science Publishers eBooks · doi:10.1201/9781439845523-14 · Cited by 951 · see citing works
Understanding mechanisms of novel gene expression in polyploids
Osborn, T. C., Pires, J. C., Birchler, J. A., Auger, D. L., Chen, Z. J., Lee, H.-S., Comai, L., Madlung, A., Doerge, R. W., Colot, V., et al. (2003) · Trends in Genetics · doi:10.1016/s0168-9525(03)00015-5 · Cited by 911 · see citing works
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Hu, T. T., Pattyn, P., Bakker, E. G., Cao, J., Cheng, J., Clark, R. M., Fahlgren, N., Fawcett, J. A., Grimwood, J., Gundlach, H., et al. (2011) · Nature Genetics · doi:10.1038/ng.807 · Cited by 856 · see citing works
Self-citationFrom polyploidy to aneuploidy, genome instability and cancer
Štorchová, Z., & Pellman, D. S. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1276 · Cited by 810 · see citing works
Evolutionary consequences of autopolyploidy
Parisod, C., Holderegger, R., & Brochmann, C. (2010) · New Phytologist · doi:10.1111/j.1469-8137.2009.03142.x · Cited by 683 · see citing works
Genomewide Nonadditive Gene Regulation in Arabidopsis Allotetraploids
Wang, J., Tian, L., Lee, H.-S., Wei, N. E., Jiang, H., Watson, B., Madlung, A., Osborn, T. C., Doerge, R. W., Comai, L., et al. (2005) · Genetics · doi:10.1534/genetics.105.047894 · Cited by 592 · see citing works
A Role for Small RNAs in DNA Double-Strand Break Repair
Wei, W., Ba, Z., Gao, M., Wu, Y., Ma, Y., Amiard, S., White, C. I., Danielsen, J. M. R., Yang, Y., & Qi, Y. (2012) · Cell · doi:10.1016/j.cell.2012.03.002 · Cited by 575 · see citing works
Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat
Griffiths, S., Sharp, R., Foote, T. N., Bertin, I., Wanous, M. K., Reader, S., Colas, I., & Moore, G. (2006) · Nature · doi:10.1038/nature04434 · Cited by 547 · see citing works
Structure and mechanism of the RNA polymerase II transcription machinery
Hahn, S. (2004) · Nature Structural & Molecular Biology · doi:10.1038/nsmb763 · Cited by 546 · see citing works
Expression and disruption of the Arabidopsis TOR (target of rapamycin) gene
Menand, B., Desnos, T., Nussaume, L., Berger, F., Bouchez, D., Meyer, C., & Robaglia, C. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.092141899 · Cited by 490 · see citing works
Sequencing of natural strains of Arabidopsis thaliana with short readsPreprint
Ossowski, S., Schneeberger, K., Clark, R. M., Lanz, C., Warthmann, N., & Weigel, D. (2008) · Genome Research · doi:10.1101/gr.080200.108 · Cited by 465 · see citing works
Autopolyploidy in angiosperms: Have we grossly underestimated the number of species?
(2007) · Taxon · doi:10.2307/25065732 · Cited by 452 · see citing works
Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
Chen, Z. J., & Ni, Z. (2006) · BioEssays · doi:10.1002/bies.20374 · Cited by 432 · see citing works
Genome-wide genetic analysis of polyploidy in yeast
Štorchová, Z., Breneman, A., Cande, J., Dunn, J. G., Burbank, K. S., O'Toole, E. T., & Pellman, D. S. (2006) · Nature · doi:10.1038/nature05178 · Cited by 360 · see citing works
Stochastic and Epigenetic Changes of Gene Expression in Arabidopsis Polyploids
Wang, J., Tian, L., Madlung, A., Lee, H.-S., Chen, M., Lee, J. J., Watson, B., Kagochi, T., Comai, L., & Chen, Z. J. (2004) · Genetics · doi:10.1534/genetics.104.027896 · Cited by 356 · see citing works
Novel patterns of gene expression in polyploid plants
Adams, K. L., & Wendel, J. F. (2005) · Trends in Genetics · doi:10.1016/j.tig.2005.07.009 · Cited by 341 · see citing works
Adaptive Variation in Beach Mice Produced by Two Interacting Pigmentation Genes
Steiner, C., Weber, J. N., & Hoekstra, H. E. (2007) · PLoS Biology · doi:10.1371/journal.pbio.0050219 · Cited by 335 · see citing works
libsequence: a C++ class library for evolutionary genetic analysis
Thornton, K. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg316 · Cited by 329 · see citing works
RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast
Hall, I. M., Noma, K.-I., & Grewal, S. I. S. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.232688099 · Cited by 319 · see citing works
Genetic interactions between polymorphisms that affect gene expression in yeast
Brem, R. B., Storey, J. D., Whittle, J., & Kruglyak, L. (2005) · Nature · doi:10.1038/nature03865 · Cited by 298 · see citing works
qiRNA is a new type of small interfering RNA induced by DNA damage
Lee, H.-C., Chang, S.-S., Choudhary, S., Aalto, A. P., Maiti, M., Bamford, D. H., & Liu, Y. (2009) · Nature · doi:10.1038/nature08041 · Cited by 280 · see citing works
HOP1: a yeast meiotic pairing gene.
Hollingsworth, N. M., & Byers, B. (1989) · Genetics · doi:10.1093/genetics/121.3.445 · Cited by 249 · see citing works
Phenotypic and Transcriptomic Changes Associated With Potato Autopolyploidization
Stupar, R. M., Bhaskar, P. B., Yandell, B. S., Rensink, W. A., Hart, A., Ouyang, S., Veilleux, R. E., Busse, J. S., Erhardt, R. J., Buell, C. R., et al. (2007) · Genetics · doi:10.1534/genetics.107.074286 · Cited by 243 · see citing works
A homologue of the yeast HOP1 gene is inactivated in the Arabidopsis meiotic mutant asy1
Caryl, A. P., Armstrong, S. J., Jones, G. H., & Franklin, F. C. H. (2000) · Chromosoma · doi:10.1007/s004120050413 · Cited by 243 · see citing works
Cell numbers and leaf development in Arabidopsis: a functional analysis of the STRUWWELPETER gene
Autran, D., Jonak, C., Belcram, K., Beemster, G. T. S., Kronenberger, J., Grandjean, O., Inzé, D., & Traas, J. A. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf614 · Cited by 237 · see citing works
Earley, K. W., Shook, M., Brower‐Toland, B. D., Hicks, L. M., & Pikaard, C. S. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03264.x · Cited by 209 · see citing works
Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast
Gerke, J., Lorenz, K., & Cohen, B. A. (2009) · Science · doi:10.1126/science.1166426 · Cited by 198 · see citing works
Patterns of Polymorphism and Demographic History in Natural Populations of Arabidopsis lyrata
Ross-Ibarra, J., Wright, S., Foxe, J., Kawabe, A., DeRose-Wilson, L. J., Gos, G., Charlesworth, D., & Gaut, B. (2008) · PLoS ONE · doi:10.1371/journal.pone.0002411 · Cited by 194 · see citing works
Gregory, T. R., & Mable, B. K. (2005) · Elsevier eBooks · doi:10.1016/b978-012301463-4/50010-3 · Cited by 186 · see citing works
Genetic variation and random drift in autotetraploid populations.
Moody, M. E., Mueller, L. D., & Soltis, D. E. (1993) · Genetics · doi:10.1093/genetics/134.2.649 · Cited by 175 · see citing works
The Arabidopsis AtRaptor genes are essential for post-embryonic plant growth
Anderson, G. H., Veit, B. E., & Hanson, M. R. (2005) · BMC Biology · doi:10.1186/1741-7007-3-12 · Cited by 173 · see citing works
Taxonomy and Phylogeny of Arabidopsis (Brassicaceae)
Al-Shehbaz, I. A., & O’Kane, S. L. (2002) · The Arabidopsis Book · doi:10.1199/tab.0001 · Cited by 168 · see citing works
Association of the Bloom syndrome protein with topoisomerase IIIalpha in somatic and meiotic cells.
Johnson, F. B., Lombard, D. B., Neff, N. F., Mastrangelo, M.-A. A., DeWolf, W. C., Ellis, N. A., Marciniak, R. A., Yin, Y., Jaenisch, R., & Guarente, L. (2000) · PubMed · Cited by 160 · see citing works
Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana
Zheng, Y., Haberer, G., Matthes, M. S., Rattei, T., Mayer, K., Gierl, A., & Torres‐Ruiz, R. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000852107 · Cited by 157 · see citing works
Shaked, H., Avivi‐Ragolsky, N., & Levy, A. A. (2006) · Genetics · doi:10.1534/genetics.105.051664 · Cited by 149 · see citing works
PAIR2 is essential for homologous chromosome synapsis in rice meiosis I
Nonomura, K., Nakano, M., Eiguchi, M., Suzuki, T., & Kurata, N. (2006) · Journal of Cell Science · doi:10.1242/jcs.02736 · Cited by 146 · see citing works
An Argonaute-Like Protein Is Required for Meiotic Silencing
Lee, D. W., Pratt, R. J., McLaughlin, M., & Aramayo, R. (2003) · Genetics · doi:10.1093/genetics/164.2.821 · Cited by 140 · see citing works
Subdivision and haplotype structure in natural populations of Arabidopsis lyrata
Wright, S., Lauga, B., & Charlesworth, D. (2003) · Molecular Ecology · doi:10.1046/j.1365-294x.2003.01743.x · Cited by 138 · see citing works
Remarkably ancient balanced polymorphisms in a multi-locus gene network
Hittinger, C. T., Gonçalves, P. M., Sampaio, J. P., Dover, J., Johnston, M., & Rokas, A. (2010) · Nature · doi:10.1038/nature08791 · Cited by 135 · see citing works
Meiosis-Specific Noncoding RNA Mediates Robust Pairing of Homologous Chromosomes in Meiosis
Ding, D., Okamasa, K., Yamane, M., Tsutsumi, C., Haraguchi, T., Yamamoto, M. P., & Hiraoka, Y. (2012) · Science · doi:10.1126/science.1219518 · Cited by 131 · see citing works
Wang, W., & Chen, X. (2004) · Development · doi:10.1242/dev.01187 · Cited by 127 · see citing works
Liu, J., & Krantz, I. D. (2008) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.9.081307.164211 · Cited by 126 · see citing works
Evolution and genetic differentiation among relatives of Arabidopsis thaliana
Koch, М. A., & Matschinger, M. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0701338104 · Cited by 123 · see citing works
Impact of epistasis and pleiotropy on evolutionary adaptation
Østman, B., Hintze, A., & Adami, C. (2011) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2011.0870 · Cited by 119 · see citing works
The MED12-MED13 module of Mediator regulates the timing of embryo patterning in Arabidopsis
Gillmor, C. S., Park, M. Y., Smith, M., Pepitone, R., Kerstetter, R. A., & Poethig, R. S. (2009) · Development · doi:10.1242/dev.043174 · Cited by 118 · see citing works
AtPIN: Arabidopsis thaliana Protein Interaction Network
Brandão, M. M., Dantas, L. L. D. B., & Silva-Filho, M. C. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-454 · Cited by 108 · see citing works
Lam, W. S., Yang, X., & Makaroff, C. A. (2005) · Journal of Cell Science · doi:10.1242/jcs.02443 · Cited by 104 · see citing works
Watanabe, K., Pacher, M., Dukowic‐Schulze, S., Schubert, V., Puchta, H., & Schubert, I. A. (2009) · The Plant Cell · doi:10.1105/tpc.108.060525 · Cited by 103 · see citing works
Durand‐Dubief, M., & Bastin, P. (2003) · BMC Biology · doi:10.1186/1741-7007-1-2 · Cited by 88 · see citing works
Isolation and characterization of the RAD54 gene from Arabidopsis thaliana
Osakabe, K., Abe, K., Yoshioka, T., Osakabe, Y., Todoriki, S., Ichikawa, H., Höhn, B., & Toki, S. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02927.x · Cited by 86 · see citing works
Meyer, R., Fofanov, V. Y., Panigrahi, A., Merchant, F. A., Zhang, N., & Pati, D. (2009) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-08-2454 · Cited by 85 · see citing works
TaASY1 promotes homologous chromosome interactions and is affected by deletion of Ph1
Boden, S. A., Langridge, P., SPANGENBERG, G. C., & Able, J. A. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03701.x · Cited by 81 · see citing works
Mutations in the RAD54 recombination gene in primary cancers
Matsuda, M., Miyagawa, K., Takahashi, M., Fukuda, T., Kataoka, T., Asahara, T., Inui, H., Watatani, M., Yasutomi, M., Kamada, N., et al. (1999) · Oncogene · doi:10.1038/sj.onc.1202692 · Cited by 81 · see citing works
Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors
Ng, D. W.-K., Zhang, C., Miller, M. E., Shen, Z., Briggs, S. P., & Chen, Z. J. (2011) · Heredity · doi:10.1038/hdy.2011.92 · Cited by 76 · see citing works
Arabidopsis hybrid speciation processes
Schmickl, R., & Koch, М. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1104212108 · Cited by 72 · see citing works
Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae)
Jørgensen, M. H., Ehrich, D., Schmickl, R., Koch, М. A., & Brysting, A. K. (2011) · BMC Evolutionary Biology · doi:10.1186/1471-2148-11-346 · Cited by 66 · see citing works
Bickel, J. S., Chen, L., Hayward, J., Yeap, S. L., Alkers, A. E., & Chan, R. C. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1001028 · Cited by 65 · see citing works
Schubert, V., Weißleder, A., Ali, H., Fuchs, J., Lermontová, I., Meister, A., & Schubert, I. A. (2009) · Chromosoma · doi:10.1007/s00412-009-0220-x · Cited by 62 · see citing works
Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis
Karlowski, W. M., Zieleziński, A., Carrère, J., Pontier, D., Lagrange, T., & Cooke, R. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq162 · Cited by 57 · see citing works
TBP-associated factors in Arabidopsis
Lago, C., Clerici, E., Mizzi, L., Colombo, L., & Kater, M. M. (2004) · Gene · doi:10.1016/j.gene.2004.08.023 · Cited by 55 · see citing works
Obbard, D. J., Jiggins, F. M., Bradshaw, N. J., & Little, T. J. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq280 · Cited by 55 · see citing works
Mannini, L., Menga, S., & Musio, A. (2010) · Human Mutation · doi:10.1002/humu.21252 · Cited by 54 · see citing works
Martelotto, L. G., Ortiz, J. P. A., Stein, J., Espinoza, F., Quarin, C. L., & Pessino, S. C. (2005) · Plant Science · doi:10.1016/j.plantsci.2005.03.015 · Cited by 53 · see citing works
Pignatta, D., Dilkes, B. P., Yoo, S., Henry, I. M., Madlung, A., Doerge, R. W., Chen, Z. J., & Comai, L. (2010) · New Phytologist · doi:10.1111/j.1469-8137.2010.03198.x · Cited by 47 · see citing works
Self-citationExtending Coalescent Theory to Autotetraploids
Arnold, B., Bomblies, K., & Wakeley, J. (2012) · Genetics · doi:10.1534/genetics.112.140582 · Cited by 44 · see citing works
Self-citationChromosome and DNA methylation dynamics during meiosis in the autotetraploid Arabidopsis arenosa
Carvalho, A., Delgado, M., Barão, A., Frescatada, M., Ribeiro, E., Pikaard, C. S., Viegas, W. S., & Neves, N. (2009) · Sexual Plant Reproduction · doi:10.1007/s00497-009-0115-2 · Cited by 40 · see citing works
Avivi, L. (1976) · Canadian Journal of Genetics and Cytology · doi:10.1139/g76-043 · Cited by 40 · see citing works
Sebastián, J., Ravi, M., Andreuzza, S., Panoli, A., Marimuthu, M. P. A., & Siddiqi, I. (2009) · The Plant Journal · doi:10.1111/j.1365-313x.2009.03845.x · Cited by 38 · see citing works
Ubiquitin and Ubiquitin-like Modifiers in Plants
Park, H. J., Park, H. C., Lee, S. Y., Bohnert, H. J., & Yun, D. (2011) · Journal of Plant Biology · doi:10.1007/s12374-011-9168-5 · Cited by 25 · see citing works
Coalescent under the evolution of coadaptation
Takahasi, K. R. (2009) · Molecular Ecology · doi:10.1111/j.1365-294x.2009.04424.x · Cited by 12 · see citing works
Flagged first, then by citations
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Mercier, R., Mézard, C., Jenczewski, E., Macaisne, N., & Grelon, M. (2014) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050213-035923 · Cited by 557 · see citing works
A Species-Wide Inventory of NLR Genes and Alleles in Arabidopsis thaliana
de Weyer, A.-L. V., Monteiro, F., Furzer, O. J., Nishimura, M. T., Çevik, V., Witek, K., Jones, J. D. G., Dangl, J. L., Weigel, D., & Bemm, F. (2019) · Cell · doi:10.1016/j.cell.2019.07.038 · Cited by 382 · see citing works
On the relative abundance of autopolyploids and allopolyploids
Barker, M. S., Arrigo, N., Baniaga, A. E., Li, Z., & Levin, D. A. (2015) · New Phytologist · doi:10.1111/nph.13698 · Cited by 380 · see citing works
A New Insight of Salt Stress Signalingin Plant
Park, H. J., Kim, W., & Yun, D. (2016) · Molecules and Cells · doi:10.14348/molcells.2016.0083 · Cited by 372 · see citing works
Dufresne, F., Stift, M., Vergilino, R., & Mable, B. K. (2013) · Molecular Ecology · doi:10.1111/mec.12581 · Cited by 352 · see citing works
Storme, N. D., & Mason, A. S. (2014) · Current Plant Biology · doi:10.1016/j.cpb.2014.09.002 · Cited by 284 · see citing works
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Yant, L. J., Hollister, J. D., Wright, K. M., Arnold, B., Higgins, J. D., Franklin, F. C. H., & Bomblies, K. (2013) · Current Biology · doi:10.1016/j.cub.2013.08.059 · Cited by 264 · see citing works
Self-citationTennessen, J. A., Govindarajulu, R., Ashman, T., & Liston, A. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu261 · Cited by 218 · see citing works
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Lenormand, T., Engelstädter, J., Johnston, S. E., Wijnker, T. G., & Haag, C. R. (2016) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2016.0001 · Cited by 188 · see citing works
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Bomblies, K., Higgins, J. D., & Yant, L. J. (2015) · New Phytologist · doi:10.1111/nph.13499 · Cited by 186 · see citing works
Self-citationPatterns and Processes of Diploidization in Land Plants
Li, Z., McKibben, M. T. W., Finch, G., Blischak, P. D., Sutherland, B. L., & Barker, M. S. (2021) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050718-100344 · Cited by 182 · see citing works
Zhang, J., Liu, Y., Xia, E., Yao, Q.-Y., Liu, X., & Gao, L. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1515170112 · Cited by 179 · see citing works
Baduel, P., Bray, S., Vallejo‐Marín, M., Kolář, F., & Yant, L. J. (2018) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2018.00117 · Cited by 172 · see citing works
Borrowed alleles and convergence in serpentine adaptation
Arnold, B., Lahner, B., DaCosta, J. M., Weisman, C. M., Hollister, J. D., Salt, D. E., Bomblies, K., & Yant, L. J. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1600405113 · Cited by 163 · see citing works
Self-citationBomblies, K., & Peichel, C. L. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2122152119 · Cited by 155 · see citing works
Self-citationWhen everything changes at once: finding a new normal after genome duplication
Bomblies, K. (2020) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2020.2154 · Cited by 141 · see citing works
Self-citationMeiosis in autopolyploid and allopolyploid Arabidopsis
Lloyd, A. H., & Bomblies, K. (2016) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2016.02.004 · Cited by 140 · see citing works
Self-citationPervasive population genomic consequences of genome duplication in Arabidopsis arenosa
Monnahan, P. J., Kolář, F., Baduel, P., Sailer, C., Koch, J., Horváth, R. A., Laenen, B., Schmickl, R., Paajanen, P., Šrámková, G., et al. (2019) · Nature Ecology & Evolution · doi:10.1038/s41559-019-0807-4 · Cited by 133 · see citing works
Self-citationBomblies, K., Jones, G., Franklin, C., Zickler, D., & Kleckner, N. E. (2016) · Chromosoma · doi:10.1007/s00412-015-0571-4 · Cited by 130 · see citing works
Self-citationPopulation Genomics for Understanding Adaptation in Wild Plant Species
Weigel, D., & Nordborg, M. (2015) · Annual Review of Genetics · doi:10.1146/annurev-genet-120213-092110 · Cited by 124 · see citing works
Effect of Polyploidy Induction on Natural Metabolite Production in Medicinal Plants
Madani, H., Escrich, A., Hosseini, B., Sanchez‐Muñoz, R., Khojasteh, A., & Palazón, J. (2021) · Biomolecules · doi:10.3390/biom11060899 · Cited by 121 · see citing works
Field Guide to Plant Model Systems
Chang, C., Bowman, J. L., & Meyerowitz, E. M. (2016) · Cell · doi:10.1016/j.cell.2016.08.031 · Cited by 120 · see citing works
Polyploidy: adaptation to the genomic environment
Hollister, J. D. (2014) · New Phytologist · doi:10.1111/nph.12939 · Cited by 118 · see citing works
Self-citationArnold, B., Kim, S., & Bomblies, K. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv089 · Cited by 118 · see citing works
Self-citationBaduel, P., Quadrana, L., Hunter, B., Bomblies, K., & Colot, V. (2019) · Nature Communications · doi:10.1038/s41467-019-13730-0 · Cited by 114 · see citing works
Self-citationGradual evolution of allopolyploidy in Arabidopsis suecica
Burns, R., Mandáková, T. M., Gunis, J., Soto-Jiménez, L. M., Liu, C., Lysák, M. A., Novikova, P. Y., & Nordborg, M. (2021) · Nature Ecology & Evolution · doi:10.1038/s41559-021-01525-w · Cited by 106 · see citing works
Polyploidy in the Arabidopsis genus
Bomblies, K., & Madlung, A. (2014) · Chromosome Research · doi:10.1007/s10577-014-9416-x · Cited by 101 · see citing works
Self-citationBeyond the thale: comparative genomics and genetics of Arabidopsis relatives
Koenig, D., & Weigel, D. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3883 · Cited by 91 · see citing works
Meiosis and Its Deviations in Polyploid Plants
Grandont, L., Jenczewski, E., & Lloyd, A. H. (2013) · Cytogenetic and Genome Research · doi:10.1159/000351730 · Cited by 91 · see citing works
Derived alleles of two axis proteins affect meiotic traits in autotetraploid Arabidopsis arenosa
Morgan, C., Zhang, H., Henry, C. E., Franklin, F. C. H., & Bomblies, K. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1919459117 · Cited by 88 · see citing works
Self-citationHenry, I. M., Dilkes, B. P., Tyagi, A. P., Gao, J., Christensen, B. J., & Comai, L. (2014) · The Plant Cell · doi:10.1105/tpc.113.120626 · Cited by 87 · see citing works
Self-citationEvolution of the BBAA Component of Bread Wheat during Its History at the Allohexaploid Level
Zhang, H., Zhu, B., Bao, Q., Gou, X., Dong, Y., Xu, C., Zhang, B., Huang, W., Liu, C., Wang, X., et al. (2014) · The Plant Cell · doi:10.1105/tpc.114.128439 · Cited by 86 · see citing works
Bock, D. G., Cai, Z., Elphinstone, C., González-Segovia, E., Hirabayashi, K., Huang, K., Keais, G. L., Kim, A., Owens, G. L., & Rieseberg, L. H. (2023) · Plant Communications · doi:10.1016/j.xplc.2023.100599 · Cited by 84 · see citing works
“These alleles are present at low frequencies in diploids and are thus readily available for selection to act on, after polyploid speciation (Hollister et al., 2012), and can also be transferred between species via adaptive introgression (Marburger et al.”
Interspecific introgression mediates adaptation to whole genome duplication
Marburger, S., Monnahan, P. J., Seear, P. J., Martin, S. H., Koch, J., Paajanen, P., Bohutínská, M., Higgins, J. D., Schmickl, R., & Yant, L. J. (2019) · Nature Communications · doi:10.1038/s41467-019-13159-5 · Cited by 81 · see citing works
Selection on Meiosis Genes in Diploid and Tetraploid Arabidopsis arenosa
Wright, K. M., Arnold, B., Xue, K. S., Šurinová, M., O’Connell, J. D., & Bomblies, K. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu398 · Cited by 79 · see citing works
Self-citationMorgan, C., White, M. A., Franklin, F. C. H., Zickler, D., Kleckner, N. E., & Bomblies, K. (2021) · Current Biology · doi:10.1016/j.cub.2021.08.028 · Cited by 78 · see citing works
Self-citationGillard, G. B., Grønvold, L., Røsæg, L. L., Holen, M. M., Monsen, Ø., Koop, B. F., Rondeau, E. B., Gundappa, M. K., Mendoza, J., Macqueen, D. J., et al. (2021) · Genome biology · doi:10.1186/s13059-021-02323-0 · Cited by 77 · see citing works
Kolář, F., Šrámková, G., Záveská, E., Nagano, A. J., Hyklová, L., Lučanová, M., Kudoh, H., & Marhold, K. (2016) · Molecular Ecology · doi:10.1111/mec.13721 · Cited by 74 · see citing works
Wu, J., Shahid, M. Q., Guo, H., Yin, W., Chen, Z., Wang, L., Liu, X., & Yong-gen, L. (2014) · Plant Reproduction · doi:10.1007/s00497-014-0250-2 · Cited by 72 · see citing works
Synthetic Polyploidy in Grafted Crops
Ruiz, M., Oustric, J., Santini, J., & Morillón, R. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.540894 · Cited by 71 · see citing works
Learning to tango with four (or more): the molecular basis of adaptation to polyploid meiosis
Bomblies, K. (2022) · Plant Reproduction · doi:10.1007/s00497-022-00448-1 · Cited by 67 · see citing works
Self-citationEvolution and Plasticity of Genome-Wide Meiotic Recombination Rates
Henderson, I. R., & Bomblies, K. (2021) · Annual Review of Genetics · doi:10.1146/annurev-genet-021721-033821 · Cited by 66 · see citing works
Self-citationPolyploid Arabidopsis species originated around recent glaciation maxima
Novikova, P. Y., Hohmann, N., & de Peer, Y. V. (2018) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2018.01.005 · Cited by 66 · see citing works
Taming the wild: resolving the gene pools of non-model Arabidopsis lineages
Hohmann, N., Schmickl, R., Chiang, T., Lučanová, M., Kolář, F., Marhold, K., & Koch, М. A. (2014) · BMC Evolutionary Biology · doi:10.1186/preaccept-1775653123133997 · Cited by 62 · see citing works
Konečná, V., Bray, S., Vlček, J., Bohutínská, M., Požárová, D., Choudhury, R. R., Bollmann‐Giolai, A., Flis, P., Salt, D. E., Parisod, C., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-25256-5 · Cited by 61 · see citing works
Chromosome painting in meiosis reveals pairing of specific chromosomes in polyploid Solanum species
He, L., Braz, G. T., Torres, G. A., & Jiang, J. (2018) · Chromosoma · doi:10.1007/s00412-018-0682-9 · Cited by 61 · see citing works
Patterns of Selection in Plant Genomes
Hough, J., Williamson, R. J., & Wright, S. (2013) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev-ecolsys-110512-135851 · Cited by 57 · see citing works
Zhou, Y., Kang, L., Liao, S., Pan, Q., Ge, X., & Li, Z. (2015) · PLoS ONE · doi:10.1371/journal.pone.0116392 · Cited by 56 · see citing works
Busoms, S., Terés, J., Huang, X., Bomblies, K., Danku, J., Douglas, A., Weigel, D., Poschenrieder, C., & Salt, D. E. (2015) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.00427 · Cited by 55 · see citing works
Self-citationThe effects of hybridization and genome doubling in plant evolution via allopolyploidy
Qiu, T., Liu, Z., & Liu, B. (2020) · Molecular Biology Reports · doi:10.1007/s11033-020-05597-y · Cited by 55 · see citing works
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus
Novikova, P. Y., Brennan, I. G., Booker, W. W., Mahony, M. J., Doughty, P., Lemmon, A. R., Lemmon, E. M., Roberts, J. D., Yant, L. J., de Peer, Y. V., et al. (2020) · PLoS Genetics · doi:10.1371/journal.pgen.1008769 · Cited by 53 · see citing works
Kolář, F., Lučanová, M., Záveská, E., Šrámková, G., Mandáková, T. M., Španiel, S., Senko, D., Svitok, M., Kolník, M., Gudžinskas, Z., et al. (2015) · Biological Journal of the Linnean Society · doi:10.1111/bij.12479 · Cited by 53 · see citing works
Autopolyploid lineage shows climatic niche expansion but not divergence in Arabidopsis arenosa
Molina‐Henao, Y. F., & Hopkins, R. (2019) · American Journal of Botany · doi:10.1002/ajb2.1212 · Cited by 50 · see citing works
Novelty and Convergence in Adaptation to Whole Genome Duplication
Bohutínská, M., Alston, M. J., Monnahan, P. J., Mandáková, T. M., Bray, S., Paajanen, P., Kolář, F., & Yant, L. J. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab096 · Cited by 49 · see citing works
Genomic and Meiotic Changes Accompanying Polyploidization
Blasio, F., Prieto, P., Pradillo, M., & Naranjo, T. (2022) · Plants · doi:10.3390/plants11010125 · Cited by 48 · see citing works
Hojsgaard, D. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00230 · Cited by 46 · see citing works
Yant, L. J., & Bomblies, K. (2015) · Genes & Development · doi:10.1101/gad.271072.115 · Cited by 46 · see citing works
Self-citationTan, F., Tu, H., Wang, R., Wu, X., Xie, K., Chen, J., Zhang, H., Xu, J., & Guo, W. (2017) · Metabolomics · doi:10.1007/s11306-017-1276-x · Cited by 45 · see citing works
Harris, A. M., & DeGiorgio, M. (2017) · G3 Genes Genomes Genetics · doi:10.1534/g3.116.037168 · Cited by 43 · see citing works
Aneuploidization under segmental allotetraploidy in rice and its phenotypic manifestation
Wu, Y., Sun, Y., Sun, S., Guo, L., Wang, J., Wang, B., Lin, X., Huang, M., Gong, Z., Sanguinet, K. A., et al. (2018) · Theoretical and Applied Genetics · doi:10.1007/s00122-018-3077-7 · Cited by 43 · see citing works
Meiosis in Polyploids and Implications for Genetic Mapping: A Review
Soares, N. R., Mollinari, M., Oliveira, G. K., Pereira, G. D. S., & Vieira, M. L. C. (2021) · Genes · doi:10.3390/genes12101517 · Cited by 40 · see citing works
Wu, J., Chen, L., Shahid, M. Q., Chen, M., Dong, Q., Li, J., Xu, X., & Liu, X. (2017) · Rice · doi:10.1186/s12284-017-0188-8 · Cited by 39 · see citing works
Baduel, P., Hunter, B., Yeola, S., & Bomblies, K. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007510 · Cited by 39 · see citing works
Self-citationThe emerging importance of cross‐ploidy hybridisation and introgression
Brown, M. R., Abbott, R. J., & Twyford, A. D. (2024) · Molecular Ecology · doi:10.1111/mec.17315 · Cited by 37 · see citing works
Modification of meiotic recombination by natural variation in plants
Lawrence, E. J., Griffin, C., & Henderson, I. R. (2017) · Journal of Experimental Botany · doi:10.1093/jxb/erx306 · Cited by 37 · see citing works
Epigenetic control of meiotic recombination in plants
Yelina, N. E., Diaz, P., Lambing, C., & Henderson, I. R. (2015) · Science China Life Sciences · doi:10.1007/s11427-015-4811-x · Cited by 37 · see citing works
Defective pollen tube tip growth induces neo-polyploid infertility
Westermann, J., Srikant, T., Gonzalo, A., Tan, H. S., & Bomblies, K. (2024) · Science · doi:10.1126/science.adh0755 · Cited by 36 · see citing works
Self-citationHabitat-Associated Life History and Stress-Tolerance Variation in Arabidopsis arenosa
Baduel, P., Arnold, B., Weisman, C. M., Hunter, B., & Bomblies, K. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.15.01875 · Cited by 35 · see citing works
Self-citationVarietal variation and chromosome behaviour during meiosis in Solanum tuberosum
Choudhary, A., Wright, L., Ponce, O., Chen, J., Prashar, A., Sánchez‐Morán, E., Luo, Z., & Compton, L. J. (2020) · Heredity · doi:10.1038/s41437-020-0328-6 · Cited by 34 · see citing works
Effects of polyploidy and reproductive mode on life history trait expression
Larkin, K., Adrian‐Tucci, C., & Neiman, M. (2016) · Ecology and Evolution · doi:10.1002/ece3.1934 · Cited by 33 · see citing works
Xiang, Z., Tang, X.-L., Liu, W., & Song, C. (2019) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2019.09.003 · Cited by 33 · see citing works
Defining autopolyploidy: Cytology, genetics, and taxonomy
Lv, Z., Nyarko, C. A., Ramtekey, V., Behn, H., & Mason, A. S. (2024) · American Journal of Botany · doi:10.1002/ajb2.16292 · Cited by 32 · see citing works
Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae
Novikova, P. Y., Kolesnikova, U. K., & Scott, A. D. (2022) · Plant Reproduction · doi:10.1007/s00497-022-00451-6 · Cited by 32 · see citing works
Higgins, J. D., Wright, K. M., Bomblies, K., & Franklin, F. C. H. (2014) · Frontiers in Plant Science · doi:10.3389/fpls.2013.00546 · Cited by 32 · see citing works
Self-citationFu, D., Mason, A. S., Xiao, M., & Yan, H. (2015) · Plant Science · doi:10.1016/j.plantsci.2015.09.017 · Cited by 31 · see citing works
All Ways Lead to Rome—Meiotic Stabilization Can Take Many Routes in Nascent Polyploid Plants
Gonzalo, A. (2022) · Genes · doi:10.3390/genes13010147 · Cited by 29 · see citing works
Genomic studies of adaptive evolution in outcrossing Arabidopsis species
Yant, L. J., & Bomblies, K. (2016) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2016.11.018 · Cited by 28 · see citing works
Self-citationBian, Y., Yang, C., Ou, X., Zhang, Z., Wang, B., Ma, W., Gong, L., Zhang, H., & Liu, B. (2018) · New Phytologist · doi:10.1111/nph.15267 · Cited by 27 · see citing works
Mining transcriptomic data to study the origins and evolution of a plant allopolyploid complex
Bombarely, A., Coate, J. E., & Doyle, J. J. (2014) · PeerJ · doi:10.7717/peerj.391 · Cited by 27 · see citing works
Polyploid Gene Expression and Regulation in Polysomic Polyploids
Hieu, P. V. (2019) · American Journal of Plant Sciences · doi:10.4236/ajps.2019.108101 · Cited by 27 · see citing works
Hohmann, N., & Koch, М. A. (2017) · BMC Genomics · doi:10.1186/s12864-017-4220-6 · Cited by 27 · see citing works
Experimental Evolution Reveals Interplay between Sch9 and Polyploid Stability in Yeast
Lu, Y.-J., Swamy, K. B. S., & Leu, J. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006409 · Cited by 26 · see citing works
Becher, H., Brown, M. R., Powell, G., Metherell, C., Riddiford, N. J., & Twyford, A. D. (2020) · Plant Communications · doi:10.1016/j.xplc.2020.100105 · Cited by 26 · see citing works
OsMND1 regulates early meiosis and improves the seed set rate in polyploid rice
Xiong, Y., Gan, L., Hu, Y., Sun, W., Zhou, X., Song, Z., Zhang, X., Li, Y., Yang, Z., Xu, W., et al. (2019) · Plant Growth Regulation · doi:10.1007/s10725-019-00476-4 · Cited by 25 · see citing works
The Arabidopsis Hop1 homolog ASY1 mediates cross-over assurance and interference
Pochon, G., Henry, I. M., Yang, C., Lory, N. C., Fernández‐Jiménez, N., Böwer, F., Hu, B., Carstens, L., Tsai, H., Pradillo, M., et al. (2022) · PNAS Nexus · doi:10.1093/pnasnexus/pgac302 · Cited by 25 · see citing works
De Novo Mutation and Rapid Protein (Co-)evolution during Meiotic Adaptation in Arabidopsis arenosa
Bohutínská, M., Handrick, V., Yant, L. J., Schmickl, R., Kolář, F., Bomblies, K., & Paajanen, P. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab001 · Cited by 24 · see citing works
Self-citationVariant calling in polyploids for population and quantitative genetics
Phillips, A. R. (2024) · Applications in Plant Sciences · doi:10.1002/aps3.11607 · Cited by 23 · see citing works
Environmental Regulation of Heterosis in the Allopolyploid Arabidopsis suecica
Solhaug, E. M., Ihinger, J., Jost, M., Gamboa, V., Marchant, D. B., Bradford, D., Doerge, R. W., Tyagi, A. P., Replogle, A., & Madlung, A. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.16.00052 · Cited by 22 · see citing works
Sutherland, B. L., & Galloway, L. F. (2018) · American Journal of Botany · doi:10.1002/ajb2.1162 · Cited by 22 · see citing works
Parallel local adaptation to an alpine environment in Arabidopsis arenosa
Wos, G., Arc, E., Hülber, K., Konečná, V., Knotek, A., Požárová, D., Bertel, C., Kaplenig, D., Mandáková, T. M., Neuner, G., et al. (2022) · Journal of Ecology · doi:10.1111/1365-2745.13961 · Cited by 22 · see citing works
Scott, A. D., Kolesnikova, U. K., Glushkevich, A., Steinmann, L., Tikhomirov, N. P., Pfordt, U., Bohutínská, M., Burns, R., Seregin, A. P., Kolář, F., et al. (2025) · Molecular Biology and Evolution · doi:10.1093/molbev/msaf153 · Cited by 21 · see citing works
The Complex History of Genome Duplication and Hybridization in North American Gray Treefrogs
Booker, W. W., Gerhardt, H. C., Lemmon, A. R., Ptacek, M. B., Hassinger, A. T. B., Schul, J., & Lemmon, E. M. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab316 · Cited by 21 · see citing works
Rao, X., Ren, J., Wang, W., Chen, R., Xie, Q., Xu, Y., Li, D., Song, Z., He, Y., Cai, D., et al. (2022) · The Crop Journal · doi:10.1016/j.cj.2022.06.011 · Cited by 20 · see citing works
Resynthesized Rapeseed (Brassica napus): Breeding and Genomics
Katche, E. I., & Mason, A. S. (2023) · Critical Reviews in Plant Sciences · doi:10.1080/07352689.2023.2186021 · Cited by 20 · see citing works
Bray, S., Hämälä, T., Zhou, M., Busoms, S., Fischer, S., Desjardins, S. D., Mandáková, T. M., Moore, C., Mathers, T. C., Cowan, L., et al. (2024) · Cell Reports · doi:10.1016/j.celrep.2024.114576 · Cited by 20 · see citing works
Trujillo, J. T., Beilstein, M. A., & Mosher, R. A. (2016) · New Phytologist · doi:10.1111/nph.14089 · Cited by 20 · see citing works
Evolution of meiotic recombination genes in maize and teosinte
Sidhu, G. K., Warzecha, T., & Pawlowski, W. P. (2017) · BMC Genomics · doi:10.1186/s12864-017-3486-z · Cited by 20 · see citing works
Genetic variation and temperature affects hybrid barriers during interspecific hybridization
Bjerkan, K. N., Hornslien, K. S., Johannessen, I. M., Krabberød, A. K., van Ekelenburg, Y. S., Kalantarian, M., Shirzadi, R., Comai, L., Brysting, A. K., Bramsiepe, J., et al. (2019) · The Plant Journal · doi:10.1111/tpj.14523 · Cited by 20 · see citing works
Whole-Genome Duplication and Host Genotype Affect Rhizosphere Microbial Communities
Ponsford, J. C. B., Hubbard, C. J., Harrison, J. G., Maignien, L., Buerkle, C. A., & Weinig, C. (2022) · mSystems · doi:10.1128/msystems.00973-21 · Cited by 20 · see citing works
Srikant, T., Gonzalo, A., & Bomblies, K. (2024) · Molecular Biology and Evolution · doi:10.1093/molbev/msae213 · Cited by 19 · see citing works
Self-citation
- Authors
- Hollister, J. D., Arnold, B. J., Svedin, E., Xue, K. S., Dilkes, B. P., & Bomblies, K.
- Affiliations
- Harvard University (US)
- Purdue University West Lafayette (US)
- Corresponding author
- Bomblies, Kirsten
- Venue
- PLoS Genetics
- Publisher
- Public Library of Science (PLoS)
- Published
- 2012-12-20
- Volume
- 8
- Issue
- 12
- Pages
- e1003093
- ISSN
- 1553-7390 (ISSN-L)
- 1553-7404
- PMC
- PMC3527224
- OpenAlex
- W2136484851
- Cited by
- 182
- References
- 83
- Citations by year
- 2026: 9 · 2025: 9 · 2024: 12 · 2023: 11 · 2022: 19 · 2021: 19 · 2020: 15 · 2019: 14 · 2018: 11 · 2017: 9 · 2016: 14 · 2015: 14 · 2014: 18 · 2013: 7 · 2012: 1
- FWCI
- 14.62
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Genetics (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Repository for Publications and Research Data (ETH Zurich) (submittedVersion, cc-by)
- ETH Zürich Research Collection (cc-by)
- Funders
- Harvard University
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Taxonomy and Phylogenetics
- Keywords
- Arabidopsis arenosa, autotetraploidy, whole-genome duplication, natural selection, selective sweeps, genome stability, chromosome cohesion, sister chromatid segregation, DNA repair, homologous recombination, meiosis
- MeSH terms
- Adaptation, Biological, Diploidy, Meiosis, Arabidopsis, Genome, Plant, DNA Methylation, Chromosome Segregation, Genomic Instability, Tetraploidy
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