Cardiovascular disease: The rise of the genetic risk score
Open accessAbstract
points• Use of risk factors for decision-making in cardiovascular disease has a long history in medicine.• Early attempts to augment traditional risk factors with genetic risk scores were hampered by too little understanding of the genetic basis of complex cardiovascular disease.• Newer studies based on hundreds of thousands of people and millions of genetic variants indicate that genetic risk scores can now outperform traditional risk factors in risk prediction.• We propose the time has come to incorporate genetic risk scores into clinical practice.• Studies should focus on the most appropriate way to do this to maximize benefit for our patients."[However,] epidemiologic information has accumulated which now allows the physician to recognize certain characteristics of increased risk in patients he [sic] sees in his practice.Some of these characteristics have been convincingly demonstrated, others are still under investigation.More precise identification will undoubtedly be possible in the future."-WilliamKannel, Director, Framingham Heart Study [1] In a classic paper [1], Kannel reported the early results of the longitudinal Framingham Heart Study, demonstrating the identification of factors (for which he coined the term "risk factors") that "precede the development of overt coronary heart disease in humans".Later, the Framingham Risk Score was formalized to include age, sex, diabetes, smoking status, total cholesterol, high-density lipoprotein (HDL) cholesterol, and blood pressure [2], providing a framework for cardiovascular disease (CVD) risk assessment to which all others are compared.Intuitively, the burden of these risk factors accumulates over time (e.g., pack years of smoking or years of hypertension), and some newer risk models allow input of risk factor data from multiple time points [3].While repeated measurement of CVD biomarkers such as total cholesterol may improve risk prediction, lifelong exposure to CVD risk factors is better captured by genetic susceptibility [4].Thus, the quest to improve risk prediction for CVD has naturally come to focus on the development of genetic risk scores [5].This has only been possible because of robust, replicable
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Cardiovascular research has led the charge towards clinical translation of PRS.
“Cardiovascular research, for example, has led the charge towards clinical translation of PRS1.”
From Clinical use of current polygenic risk scores may exacerbate health disparities (2019) · cites this paper as [1]
The Summary points describe a cardiovascular pilot study that showed the feasibility of delivering a genetic risk score in a clinical setting, and the authors propose incorporating such scores into practice. They also say few studies have addressed practical implementation. The paper does not establish that cardiovascular research has led other fields in clinical translation. (LLM, conf=0.83)
Experimental — accuracy not yet measuredMany earlier criticisms of limited prediction power are now recognized to have been chiefly an issue of insufficient sample size, which is no longer the case for many outcomes.
“Many earlier criticisms of limited prediction power are now recognized to have been chiefly an issue of insufficient sample size, which is no longer the case for many outcomes1.”
From Clinical use of current polygenic risk scores may exacerbate health disparities (2019) · cites this paper as [1]
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Finding the missing heritability of complex diseases
Manolio, T. A., Collins, F. S., Cox, N. J., Goldstein, D. B., Hindorff, L. A., Hunter, D. J., McCarthy, M. I., Ramos, E. M., Cardon, L. R., Chakravarti, A., et al. (2009) · Nature · doi:10.1038/nature08494 · Cited by 8,336 · see citing works
Khera, A. V., Chaffin, M., Aragam, K. G., Haas, M. E., Roselli, C., Choi, S. H., Natarajan, P., Lander, E. S., Lubitz, S. A., Ellinor, P. T., et al. (2018) · Nature Genetics · doi:10.1038/s41588-018-0183-z · Cited by 2,953 · see citing works
Whelton, P. K., Carey, R. M., Aronow, W. S., Casey, D. E., Collins, K. J., Dennison Himmelfarb, C., DePalma, S. M., Gidding, S., Jamerson, K. A., Jones, D. W., et al. (2018) · Circulation · doi:10.1161/cir.0000000000000596 · Cited by 1,127 · see citing works
An agenda for personalized medicine
Ng, P. C., Murray, S. S., Levy, S., & Venter, J. C. (2009) · Nature · doi:10.1038/461724a · Cited by 330 · see citing works
Pepe, M. S., Fan, J., Feng, Z., Gerds, T., & Hilden, J. (2015) · Statistics in Biosciences · doi:10.1007/s12561-014-9118-0 · Cited by 191 · see citing works
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Research works printed but not linked: 43
- [1]Kannel WB. Factors of Risk in the Development of Coronary Heart Disease—Six-Year Follow-up Experience: The Framingham Study. Ann Intern Med. 1961; 55: 33 13751193
- [2]Wilson PW, D’Agostino RB, Levy D, Belanger AM, Silbershatz H, Kannel WB. Prediction of coronary heart disease using risk factor categories. Circulation. 1998; 97: 1837– 1847. 9603539
- [3]Gluckman TJ, Kovacs RJ, Stone NJ, Damalas D, Mullen JB, Oetgen WJ. The ASCVD Risk Estimator App: From Concept to the Current State. J Am Coll Cardiol. 2016; 67: 350– 352. doi: 10.1016/j.jacc.2015.10.068 26796407 · DOI
- [4]Voight BF, Peloso GM, Orho-Melander M, Frikke-Schmidt R, Barbalic M, Jensen MK, et al Plasma HDL cholesterol and risk of myocardial infarction: a mendelian randomisation study. Lancet. 2012; 380: 572– 580. doi: 10.1016/S0140-6736(12)60312-2 22607825 PMC3419820 · DOI · Paper page
- [5]Morrison AC, Bare LA, Chambless LE, Ellis SG, Malloy M, Kane JP, et al Prediction of coronary heart disease risk using a genetic risk score: the Atherosclerosis Risk in Communities Study. Am J Epidemiol. 2007; 166: 28– 35. doi: 10.1093/aje/kwm060 17443022 · DOI
- [6]Liu C, Kraja AT, Smith JA, Brody JA, Franceschini N, Bis JC, et al Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci. Nat Genet. 2016; 48: 1162– 1170. doi: 10.1038/ng.3660 27618448 PMC5320952 · DOI
- [7]Preuss M, König IR, Thompson JR, Erdmann J, Absher D, Assimes TL, et al Design of the Coronary ARtery DIsease Genome-Wide Replication And Meta-Analysis (CARDIoGRAM) StudyClinical Perspective: A Genome-Wide Association Meta-analysis Involving More Than 22 000 Cases and 60 000 Controls. Circulation: Genomic and Precision Medicine. 2010; 3: 475– 483. PMC3070269 20923989
- [8]Ripatti S, Tikkanen E, Orho-Melander M, Havulinna AS, Silander K, Sharma A, et al A multilocus genetic risk score for coronary heart disease: case-control and prospective cohort analyses. Lancet. 2010; 376: 1393– 1400. doi: 10.1016/S0140-6736(10)61267-6 20971364 PMC2965351 · DOI · Paper page
- [9]Ganna A, Magnusson PKE, Pedersen NL, de Faire U, Reilly M, Arnlöv J, et al Multilocus genetic risk scores for coronary heart disease prediction. Arterioscler Thromb Vasc Biol. 2013; 33: 2267– 2272. doi: 10.1161/ATVBAHA.113.301218 23685553 · DOI · Paper page
- [10]Pencina MJ, D’Agostino RB Sr, D’Agostino RB Jr, Vasan RS. Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond. Stat Med. 2008; 27: 112– 157. 17569110
- [12]Hilden J, Gerds TA. A note on the evaluation of novel biomarkers: do not rely on integrated discrimination improvement and net reclassification index. Stat Med. 2014; 33: 3405– 3414. doi: 10.1002/sim.5804 23553436 · DOI
- [13]Kerr KF, Janes H. First things first: risk model performance metrics should reflect the clinical application. Stat Med. 2017; 36: 4503– 4508. doi: 10.1002/sim.7341 29156498 PMC5726302 · DOI
- [16]Collins R. What makes UK Biobank special? Lancet. 2012; 379: 1173– 1174. doi: 10.1016/S0140-6736(12)60404-8 22463865 · DOI · Paper page
- [17]Sudlow C, Gallacher J, Allen N, Beral V, Burton P, Danesh J, et al UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age. PLoS Med. 2015; 12(3): e1001779 doi: 10.1371/journal.pmed.1001779 25826379 PMC4380465 · DOI · Paper page
- [18]Evangelou E, Warren HR, Mosen-Ansorena D, Mifsud B, Pazoki R, Gao H, et al Genetic analysis of over one million people identifies 535 novel loci for blood pressure [Internet]. bioRxiv. 2017 p. 198234 doi: 10.1101/198234 · DOI
- [19]Zhang Y, Qi G, Park J-H, Chatterjee N. Estimation of complex effect-size distributions using summary-level statistics from genome-wide association studies across 32 complex traits and implications for the future [Internet]. bioRxiv. 2017 p. 175406 doi: 10.1101/175406 30104760 · DOI
- [20]Khera AV, Emdin CA, Drake I, Natarajan P, Bick AG, Cook NR, et al Genetic Risk, Adherence to a Healthy Lifestyle, and Coronary Disease. N Engl J Med. 2016; 375: 2349– 2358. doi: 10.1056/NEJMoa1605086 27959714 PMC5338864 · DOI · Paper page
- [21]Khera AV, Chaffin M, Aragam K, Emdin CA, Klarin D, Haas M, et al Genome-wide polygenic score to identify a monogenic risk-equivalent for coronary disease [Internet]. bioRxiv. 2017 p. 218388 doi: 10.1101/218388 · DOI
- [22]Inouye M, Abraham G, Nelson CP, Wood AM, Sweeting MJ, Dudbridge F, et al Genomic risk prediction of coronary artery disease in nearly 500,000 adults: implications for early screening and primary prevention [Internet]. bioRxiv. 2018 doi: 10.1101/250712 PMC6176870 30309464 · DOI
- [23]Dickson SP, Wang K, Krantz I, Hakonarson H, Goldstein DB. Rare variants create synthetic genome-wide associations. PLoS Biol. 2010; 8(1): e1000294 doi: 10.1371/journal.pbio.1000294 20126254 PMC2811148 · DOI · Paper page
- [24]Fuchsberger C, Flannick J, Teslovich TM, Mahajan A, Agarwala V, Gaulton KJ, et al The genetic architecture of type 2 diabetes. Nature. 2016; 536: 41– 47. doi: 10.1038/nature18642 27398621 PMC5034897 · DOI · Paper page
- [25]Assimes TL, Roberts R. Genetics: Implications for Prevention and Management of Coronary Artery Disease. J Am Coll Cardiol. 2016; 68: 2797– 2818. doi: 10.1016/j.jacc.2016.10.039 28007143 · DOI
- [26]Fontaine-Bisson B, Renström F, Rolandsson O, MAGIC, Payne F, Hallmans G, et al Evaluating the discriminative power of multi-trait genetic risk scores for type 2 diabetes in a northern Swedish population. Diabetologia. 2010; 53: 2155– 2162. doi: 10.1007/s00125-010-1792-y 20571754 PMC2931645 · DOI
- [27]de Miguel-Yanes JM, Shrader P, Pencina MJ, Fox CS, Manning AK, Grant RW, et al Genetic risk reclassification for type 2 diabetes by age below or above 50 years using 40 type 2 diabetes risk single nucleotide polymorphisms. Diabetes Care. 2011; 34: 121– 125. doi: 10.2337/dc10-1265 20889853 PMC3005447 · DOI
- [28]Dewey FE, Grove ME, Pan C, Goldstein BA, Bernstein JA, Chaib H, et al Clinical interpretation and implications of whole-genome sequencing. JAMA. 2014; 311: 1035– 1045. doi: 10.1001/jama.2014.1717 24618965 PMC4119063 · DOI
- [29]Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, et al Clinical assessment incorporating a personal genome. Lancet. 2010; 375: 1525– 1535. doi: 10.1016/S0140-6736(10)60452-7 20435227 PMC2937184 · DOI · Paper page
- [31]Nayor M, Vasan RS. Recent Update to the US Cholesterol Treatment Guidelines: A Comparison With International Guidelines. Circulation. 2016; 133: 1795– 1806. doi: 10.1161/CIRCULATIONAHA.116.021407 27143546 PMC4857879 · DOI
- [32]Stone NJ, Robinson JG, Lichtenstein AH, Merz CNB, Blum CB, Eckel RH, et al 2013 ACC/AHA guideline on the treatment of blood cholesterol to reduce atherosclerotic cardiovascular risk in adults: a report of the American College of Cardiology/American Heart Association Task Force on Practice Guidelines. J Am Coll Cardiol. 2014; 63: 2889– 2934. doi: 10.1016/j.jacc.2013.11.002 24239923 · DOI · Paper page
- [33]Bloss CS, Schork NJ, Topol EJ. Effect of direct-to-consumer genomewide profiling to assess disease risk. N Engl J Med. 2011; 364: 524– 534. doi: 10.1056/NEJMoa1011893 21226570 PMC3786730 · DOI
- [34]Pazoki R, Dehghan A, Evangelou E, Warren H, Gao H, Caulfield M, et al Genetic Predisposition to High Blood Pressure and Lifestyle Factors: Associations With Midlife Blood Pressure Levels and Cardiovascular Events. Circulation. 2018; 137: 653– 661. doi: 10.1161/CIRCULATIONAHA.117.030898 29254930 · DOI
- [35]Knowles JW, Zarafshar S, Pavlovic A, Goldstein BA, Tsai S, Li J, et al Impact of a Genetic Risk Score for Coronary Artery Disease on Reducing Cardiovascular Risk: A Pilot Randomized Controlled Study. Front Cardiovasc Med. 2017; 4: 53 doi: 10.3389/fcvm.2017.00053 28856136 PMC5558259 · DOI
- [36]Goldstein BA, Knowles JW, Salfati E, Ioannidis JPA, Assimes TL. Simple, standardized incorporation of genetic risk into non-genetic risk prediction tools for complex traits: coronary heart disease as an example. Front Genet. 2014; 5: 254 doi: 10.3389/fgene.2014.00254 25136350 PMC4117937 · DOI
- [37]Knowles JW, Assimes TL, Kiernan M, Pavlovic A, Goldstein B, Yank V, et al Randomized trial of personal genomics for preventive cardiology: design and challenges. Circ Cardiovasc Genet. 2012; 5: 368– 376. doi: 10.1161/CIRCGENETICS.112.962746 22715281 PMC3394683 · DOI
- [38]Kullo IJ, Jouni H, Austin EE, Brown S-A, Kruisselbrink TM, Isseh IN, et al Incorporating a Genetic Risk Score into Coronary Heart Disease Risk Estimates: Effect on LDL Cholesterol Levels (the MIGENES Clinical Trial). Circulation. 2016; CIRCULATIONAHA.115.020109. PMC4803581 26915630
- [39]O’Malley PG, Feuerstein IM, Taylor AJ. Impact of electron beam tomography, with or without case management, on motivation, behavioral change, and cardiovascular risk profile: a randomized controlled trial. JAMA. 2003; 289: 2215– 2223. doi: 10.1001/jama.289.17.2215 12734132 · DOI
- [40]Johnson HM, Einerson J, Korcarz CE, Aeschlimann SE, Stein JH. Long-term effects of carotid screening on patient outcomes and behaviors. Arch Intern Med. 2011; 171: 589– 591. doi: 10.1001/archinternmed.2011.90 21444853 PMC3075090 · DOI
- [41]McEvoy JW, Blaha MJ, Nasir K, Yoon YE, Choi E-K, Cho I-S, et al Impact of coronary computed tomographic angiography results on patient and physician behavior in a low-risk population. Arch Intern Med. 2011; 171: 1260– 1268. doi: 10.1001/archinternmed.2011.204 21606093 · DOI
- [42]McConnell MV, Shcherbina A, Pavlovic A, Homburger JR, Goldfeder RL, Waggot D, et al Feasibility of Obtaining Measures of Lifestyle From a Smartphone App: The MyHeart Counts Cardiovascular Health Study. JAMA Cardiol. 2017; 2: 67– 76. doi: 10.1001/jamacardio.2016.4395 27973671 · DOI · Paper page
- [44]Grady C, Cummings SR, Rowbotham MC, McConnell MV, Ashley EA, Kang G. Informed Consent. N Engl J Med. 2017; 376: 856– 867. doi: 10.1056/NEJMra1603773 28249147 · DOI
- [45]Ashley EA, Hershberger RE, Caleshu C, Ellinor PT, Garcia JGN, Herrington DM, et al Genetics and cardiovascular disease: a policy statement from the American Heart Association. Circulation. 2012; 126: 142– 157. doi: 10.1161/CIR.0b013e31825b07f8 22645291 PMC3721666 · DOI
- [48]Hudson KL, Holohan MK. Keeping pace with the times—the Genetic Information Nondiscrimination Act of 2008. N Engl J Med 2008; 358: 2661– 2663 Available from: http://www.nejm.org/doi/full/10.1056/NEJMp0803964 doi: 10.1056/NEJMp0803964 18565857 · DOI
- [49]Kraft SA, Constantine M, Magnus D, Porter KM, Lee SS-J, Green M, et al A randomized study of multimedia informational aids for research on medical practices: Implications for informed consent. Clin Trials. 2017; 14: 94– 102. doi: 10.1177/1740774516669352 27625314 PMC5300898 · DOI
- [50]Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, et al Phased Whole-Genome Genetic Risk in a Family Quartet Using a Major Allele Reference Sequence. PLoS Genet. 2011; 7(9): e1002280 doi: 10.1371/journal.pgen.1002280 21935354 PMC3174201 · DOI
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Clinical use of current polygenic risk scores may exacerbate health disparities
Martin, A. R., Kanai, M., Kamatani, Y., Okada, Y., Neale, B. M., & Daly, M. J. (2019) · Nature Genetics · doi:10.1038/s41588-019-0379-x · Cited by 2,831 · see citing works
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Current clinical use of polygenic scores will risk exacerbating health disparities
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- Authors
- Knowles, J. W., & Ashley, E. A.
- Affiliations
- Stanford Medicine (US)
- Corresponding author
- Ashley, Euan A.
- Venue
- PLOS Medicine
- Publisher
- Public Library of Science (PLoS)
- Published
- 2018-03-30
- Volume
- 15
- Issue
- 3
- Pages
- e1002546
- ISSN
- 1549-1277 (ISSN-L)
- 1549-1676
- PMC
- PMC5877829
- OpenAlex
- W2794819865
- Cited by
- 182
- References
- 5
- Citations by year
- 2026: 2 · 2025: 14 · 2024: 12 · 2023: 27 · 2022: 31 · 2021: 28 · 2020: 23 · 2019: 32 · 2018: 13
- FWCI
- 14.69
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS Medicine (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Institutes of Health (NIH-R01)
- National Heart, Lung, and Blood Institute (R01HL126527, R01HL113006, R01HL130020, T32HL094274)
- National Human Genome Research Institute (U01HG007436, U01HG007708)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK107437)
- National Institute of Biomedical Imaging and Bioengineering (U24EB023674)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Cardiovascular Health and Risk Factors
- Health Sciences › Medicine › Surgery › Lipoproteins and Cardiovascular Health
- Keywords
- polygenic risk score, cardiovascular disease, cardiovascular risk prediction, Framingham risk score, traditional cardiovascular risk factors, genetic susceptibility
- MeSH terms
- Cardiovascular Diseases, Humans, Phenotype, Predictive Value of Tests, Risk Factors, Genetic Variation, Biomarkers, Risk Assessment, Genome-Wide Association Study
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