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Loss of the Suv39h Histone Methyltransferases Impairs Mammalian Heterochromatin and Genome Stability

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Recent Advances in Studies of Genomic DNA Methylation and Its Involvement in Regulating Drought Stress Response in Crops

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Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1

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The Armadillo Repeat Gene ZAK IXIK Promotes Arabidopsis Early Embryo and Endosperm Development through a Distinctive Gametophytic Maternal Effect

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Transgenerational inheritance of induced changes in the epigenetic state of chromatin in plants

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Maize Unstable factor for orange1 Is Required for Maintaining Silencing Associated with Paramutation at the pericarp color1 and booster1 Loci

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The CHH motif in sugar beet satellite DNA : a modulator for cytosine methylation

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Ammonium Inhibits Chromomethylase 3-Mediated Methylation of the Arabidopsis Nitrate Reductase Gene NIA2

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Anno genominis XX: 20 years of Arabidopsis genomics

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Establishing the Architecture of Plant Gene Regulatory Networks

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Decoding histone 3 lysine methylation: Insights into seed germination and flowering

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The Importance of Genetic and Epigenetic Research in the Brassica Vegetables in the Face of Climate Change

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Defining the Functional Network of Epigenetic Regulators in Arabidopsis thaliana

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Characterization of Histone H3 Lysine 4 and 36 Tri-methylation in Brassica rapa L.

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The BORDER family of negative transcription elongation factors regulates flowering time in Arabidopsis

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Epigenomic modification in rice controls meiotic recombination and segregation distortion

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Mechanisms Underlying Epigenetic Regulation in Arabidopsis thaliana

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JMJ 24 binds to RDR 2 and is required for the basal level transcription of silenced loci in Arabidopsis

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Epigenetic Regulation of Telomere Maintenance

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Transposable Elements as Tool for Crop Improvement

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Leveraging histone modifications to improve genome annotations

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The unusual predominance of maintenance DNA methylation in Spirodela polyrhiza

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Modeling a New Water Channel That Allows SET9 to Dimethylate p53

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Alterations of histone modifications at the senescence-associated gene HvS40 in barley during senescence

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The ancestral chromatin landscape of land plants

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The chromatin remodeling factor OsINO80 promotes H3K27me3 and H3K9me2 deposition and maintains TE silencing in rice

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Intronic heterochromatin prevents cryptic transcription initiation in Arabidopsis

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Genomic and Gene-Level Distribution of Histone H3 Dimethyl Lysine-27 (H3K27me2) in Arabidopsis

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Structure and Mechanism of Plant DNA Methyltransferases

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Epigenetics in Plant Reproductive Development: An Overview from Flowers to Seeds

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Expression of the C-Terminal Domain of Mammalian TET3 DNA Dioxygenase in Arabidopsis thaliana Induces Heritable Methylation Changes at rDNA Loci

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Histone Acetylation Accompanied with Promoter Sequences Displaying Differential Expression Profiles of B-Class MADS-Box Genes for Phalaenopsis Floral Morphogenesis

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Epiallelic Variation in Arabidopsis thalianaPreprint

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Epigenome guided crop improvement: current progress and future opportunities

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Epigenetic Analyses and the Distribution of Repetitive DNA and Resistance Genes Reveal the Complexity of Common Bean (Phaseolus vulgaris L., Fabaceae) Heterochromatin

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Epigenetic memory of DNAi associated with cytosine methylation and histone modification in fern

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Epigenetic Chromatin Regulators as Mediators of Abiotic Stress Responses in Cereals

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Structural and functional features of the 5-methylcytosine distribution in the eukaryotic genome

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Chromatin sensing: integration of environmental signals to reprogram plant development through chromatin regulators

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PTGS is dispensable for the initiation of epigenetic silencing of an active transposon in Arabidopsis

Trasser, M., Bohl‐Viallefond, G., Barragán‐Borrero, V., Diezma‐Navas, L., Loncsek, L., Nordborg, M., & Marí‐Ordóñez, A. (2024) · EMBO Reports · doi:10.1038/s44319-024-00304-5 · Cited by 9

Chromosomal distribution of H3K4me2, H3K9me2 and 5-methylcytosine: variations associated with polyploidy and hybridization in Brachiaria (Poaceae)

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Overlapping RdDM and non-RdDM mechanisms work together to maintain somatic repression of a paramutagenic epiallele of maize pericarp color1

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Mechanistic insights into allosteric regulation of methylated DNA and histone H3 recognition by SRA and SET domains of SUVH5 and the basis for di‐methylation of lysine residue

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Chromatin Modifications in Plants

Zhang, X. (2012) · Springer eBooks · doi:10.1007/978-3-7091-1130-7_15 · Cited by 9

The histone variant H2A.W cooperates with chromatin modifications and linker histone H1 to maintain transcriptional silencing of transposons in ArabidopsisPreprint

Bourguet, P., Yelagandula, R., To, T. K., Osakabe, A., Allishe, A., Lu, R. J.-H., Kakutani, T., Chen, P., & Berger, F. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.31.493688 · Cited by 9

RNA-directed DNA methylation mutants reduce histone methylation at the paramutated maize booster1 enhancer

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Dynamic evolution of the heterochromatin sensing histone demethylase IBM1

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Tissue and/or developmental stage specific methylation of nrDNA in Capsicum annuum

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The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylationPreprint

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Post-Translational Modifications of Nuclear Proteins in the Response of Plant Cells to Abiotic Stresses

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From epigenetics to epigenomics and their implications in plant breeding

Tsaftaris, A. S., Kapazoglou, A., & Darzentas, N. (2011) · Elsevier eBooks · doi:10.1016/b978-0-12-381466-1.00014-6 · Cited by 6

Epigenetic switches of tobacco transgenes associate with transient redistribution of histone marks in callus culture

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BLA1 Affects Leaf Angles by Altering Brassinosteroid Biosynthesis in Rice (Oryza sativa L.)

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Major alleles of CDCA7 shape CG methylation in Arabidopsis thaliana

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From parasites to partners: exploring the intricacies of host-transposon dynamics and coevolution

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Modeling transposable elements dynamics during polyploidization in plants

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Glue for Jumping Elements: Epigenetic Means for Controlling Transposable Elements in Plants

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Epigenetic Regulation in Fleshy Fruit: Perspective for Grape Berry Development and Ripening

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Histone modification as a potential preventative and therapeutic approach for cardiovascular disease

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Epigenetic landscape of germline specific genes in the sporophyte cells of Arabidopsis thaliana

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Unusual predominance of maintenance DNA methylation in Spirodela polyrhizaPreprint

Harkess, A., Bewick, A. J., Lu, Z., Fourounjian, P., Messing, J. W., Michael, T. P., Schmitz, R. J., & Meyers, B. C. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.12.03.410332 · Cited by 5

Cullin4‐Ring ligase‐mediated degradation of an H3K9 methyltransferase compromises cell proliferation and fruit size in tomato

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Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.)

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Silencing and anti-silencing mechanisms that shape the epigenome in plants

Inagaki, S. (2021) · Genes & Genetic Systems · doi:10.1266/ggs.21-00041 · Cited by 4

Decoding the Epigenomes of Herbaceous Plants

Schmitz, R. J., & Zhang, X. (2013) · Advances in botanical research · doi:10.1016/b978-0-12-417163-3.00010-x · Cited by 4

Plant mobile domain proteins ensure Microrchidia 1 expression to fulfill transposon silencing

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Methylome differences among barley inbreds and their association with genomic, transcriptomic, and phenotypic variation

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Conserved functions of chromatin regulators in basal Archaeplastida

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Profiling Developmentally and Environmentally Controlled Chromatin Reprogramming

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Introduction of a long synthetic repetitive DNA sequence into cultured tobacco cells

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Plant genome response to incoming coding sequences: stochastic transcriptional activation independent of integration lociPreprint

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Chapter 3 Epigenetics

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Epigenetics and abiotic stress tolerance in wheat crops: Consequences and application

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Transcriptome-wide identification and functional investigation of the RDR2- and DCL3-dependent small RNAs encoded by long non-coding RNAs in Arabidopsis thaliana

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Plant Physiomics: Photoelectrochemical and Molecular Retrograde Signalling in Plant Acclimatory and Defence Responses

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Review Epigenetic control of plant immunity

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The Role of Epigenetic Transcriptional Regulation in Brassica Vegetables: A Potential Resource for Epigenetic Breeding

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Maintenance and Inheritance of DNA Methylation in Arabidopsis

Hsieh, P.-H. (2016) · eScholarship (California Digital Library) · Cited by 2

PTGS is dispensable for the initiation of epigenetic silencing of an active transposon in ArabidopsisPreprint

Trasser, M., Bohl‐Viallefond, G., Barragán‐Borrero, V., Diezma‐Navas, L., Loncsek, L., Nordborg, M., & Marí‐Ordóñez, A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.27.596030 · Cited by 2

Paradoxes of Plant Epigenetics

Ezhova, T. A. (2021) · Russian Journal of Developmental Biology · doi:10.1134/s1062360421060047 · Cited by 2

Sequencing CURLY LEAF-associated RNAs in Arabidopsis revealed prevalent intergenic RNAs from the nuclear mitochondrial sequence

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Plastid perturbations trigger epigenetic programs during environmental sensing in plants

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Chromatin analysis of an Arabidopsis Phytochrome A allele reveals the correlation of transcriptional repression with recalcitrance to histone acetylation

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Transcriptome-wide Identification and Expression Analysis of Brachypodium distachyon Transposons in Response to Viral Infection

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Study on Plant DNA Methylation through RdDM Pathway and DRM2

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Cataloging Posttranslational Modifications in Plant Histones

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Chromatin and Gene Expression Mechanisms in Hybrids

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DNA Methylation and Transgenerational Stress Memories in Arabidopsis thaliana

Smith, T. (2013) · White Rose eTheses Online (University of Leeds, The University of Sheffield, University of York) · Cited by 1

Transcriptional control and exploitation of an immune-responsive family of plant retrotransposonsPreprint

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TRANSPOSABLE ELEMENT DIVERSITY, DIVERGENCE, AND CONTRIBUTION TO GENOME EVOLUTION IN PLANTS

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Epigenetic Malleability at Core Promoter Regulates Tobacco PR-1a Expression after Salicylic Acid TreatmentPreprint

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Miao, M., Tang, X., Gao, L., Gao, J., Wang, H., Wang, S., Zhu, Y., Niu, X., Fan, Y.-H., Chen, Y., et al. (2023) · Research Square · doi:10.21203/rs.3.rs-2457371/v1 · Cited by 1

Investigating the barley methylome, its variation and association with genomic, transcriptomic, and phenotypic variationPreprint

Kühl, M., Wu, P., Shrestha, A., Engelhorn, J., Hartwig, T., & Stich, B. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.21.619366 · Cited by 1

Investigating locus-specific effects on transgene silencing and DNA methylation in Arabidopsis thaliana

Walton, E. (2015) · UPT. Syiah Kuala University Library (Syiah Kuala University)

Identification and Characterization of DNA Methylation Variation within Maize

Eichten, S. R. (2013) · University of Minnesota Digital Conservancy (University of Minnesota)

Global analysis of the methyl-CpG binding protein MeCP2

Skene, P. J. (2010) · ERA

Correction: Evolutionarily Conserved Histone Methylation Dynamics during Seed Life-Cycle Transitions

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A bioinformatics analysis of the arabidopsis thaliana epigenome

Ahmed, I. (2011) · theses.fr (ABES) · doi:10.70675/96eaec23zf43dz4831za251z650ace9cc6f1

Active DNA Demethylation in the Arabidopsis Endosperm

Ibarra, C. A. (2012) · eScholarship (California Digital Library)

Genomic Distribution of H3K9me2 and DNA Methylation in a Maize Genome

West, P. T., Li, Q., Ji, L., Eichten, S. R., Song, J., Vaughn, M. W., Schmitz, R. J., & Springer, N. M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0105267 · Cited by 158

Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis

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Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to

Thaliana, I. A., Schubert, D., & Jacobsen, S. E. (2016)

Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana

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Interplay between Two Epigenetic Marks

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