The Evolution of Enzyme Specificity in the Metabolic Replicator Model of Prebiotic Evolution
Open accessAbstract
The chemical machinery of life must have been catalytic from the outset. Models of the chemical origins have attempted to explain the ecological mechanisms maintaining a minimum necessary diversity of prebiotic replicator enzymes, but little attention has been paid so far to the evolutionary initiation of that diversity. We propose a possible first step in this direction: based on our previous model of a surface-bound metabolic replicator system we try to explain how the adaptive specialization of enzymatic replicator populations might have led to more diverse and more efficient communities of cooperating replicators with two different enzyme activities. The key assumptions of the model are that mutations in the replicator population can lead towards a) both of the two different enzyme specificities in separate replicators: efficient "specialists" or b) a "generalist" replicator type with both enzyme specificities working at less efficiency, or c) a fast-replicating, non-enzymatic "parasite". We show that under realistic trade-off constraints on the phenotypic effects of these mutations the evolved replicator community will be usually composed of both types of specialists and of a limited abundance of parasites, provided that the replicators can slowly migrate on the mineral surface. It is only at very weak trade-offs that generalists take over in a phase-transition-like manner. The parasites do not seriously harm the system but can freely mutate, therefore they can be considered as pre-adaptations to later, useful functions that the metabolic system can adopt to increase its own fitness.
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Simulations show that even with strict phenotypic trade-off constraints, it is possible to evolve metabolic replicator sets of nearly optimal values in all three traits if a small wobbling is permitted in trade-off relationships.
“It can be shown in simulations that—even with rather strict phenotypic trade-off constraints enforced between different aspects of replicator performance—it is possible to evolve metabolic replicator sets of nearly optimal values in all these three traits if a small “wobbling” is permitted in the trade-off relationships [35].”
From Ecology and Evolution in the RNA World Dynamics and Stability of Prebiotic Replicator Systems (2017) · cites this paper as [35]
The Methods section describes simulations with three-way trade-offs among two enzyme activities and replication rate, and says selection shifts phenotypes toward the trade-off surface. It does not report that a small wobble in those relationships permits nearly optimal values in all three traits. Its Introduction uses “wobbling” only for variation in enzyme structure, not for trade-off relationships; page numbers are unavailable in our copy. (LLM, conf=0.86)
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Sorted by citations
Origins of life: a problem for physics, a key issues review
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“There are a number of models in recent years that begin to blur the boundary between ’genetics’ and ’metabolism’, for example in metabolic-replicator models as in [55, 107, 108].”
BackgroundWalker, S. I., Grover, M. A., & Hud, N. V. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034166 · Cited by 70 · see citing works
“Additionally, the emergence of a synthetase captures some properties of metabolic replicator models [34,37], demonstrating a possible pathway between the prefunctional stage of replicating nonfunctional sequences and the subsequent stage of functional sequence optimization.”
BackgroundResultEcology and Evolution in the RNA World Dynamics and Stability of Prebiotic Replicator Systems
Szilágyi, A., Zachar, I., Scheuring, I., Kun, Á., Könnyű, B., & Czárán, T. (2017) · Life · doi:10.3390/life7040048 · Cited by 44 · see citing works
“, parallel or alternative enzyme activities of the same replicator) [35], the explicit assignment of the replicase function to an additional replicator species [34] or allowing for phenotype-genotype separation in the complementary strands of the replicators [115] did not change the general conclusion regarding the vi…”
BackgroundSelf-citationEvolution of the division of labor between genes and enzymes in the RNA world
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Self-citation
- Authors
- Könnyű, B., & Czárán, T.
- Affiliations
- Eötvös Loránd University (HU)
- Corresponding author
- Czárán, Tamás
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2011-06-16
- Volume
- 6
- Issue
- 6
- Pages
- e20931
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3116859
- OpenAlex
- W2032941780
- Cited by
- 26
- References
- 8
- Citations by year
- 2026: 2 · 2025: 1 · 2021: 1 · 2020: 4 · 2019: 1 · 2018: 3 · 2017: 2 · 2015: 3 · 2014: 5 · 2013: 1 · 2012: 3
- FWCI
- 1.53
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- ELTE Digital Institutional Repository (EDIT) (Eötvös Loránd University) (submittedVersion, cc-by)
- Funders
- Hungarian Scientific Research Fund
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- enzyme specificity, prebiotic evolution, origin of life, phase transitions, preadaptation
- MeSH terms
- Enzymes, Biological Evolution, Models, Biological, Substrate Specificity
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