The DOI matches its Crossref record; 52 of the 54 references it cites were found in a registry or an index.
Non-Catalytic Site HIV-1 Integrase Inhibitors Disrupt Core Maturation and Induce a Reverse Transcription Block in Target Cells
Open accessAbstract
HIV-1 integrase (IN) is the target for two classes of antiretrovirals: i) the integrase strand-transfer inhibitors (INSTIs) and ii) the non-catalytic site integrase inhibitors (NCINIs). NCINIs bind at the IN dimer interface and are thought to interfere primarily with viral DNA (vDNA) integration in the target cell by blocking IN-vDNA assembly as well as the IN-LEDGF/p75 interaction. Herein we show that treatment of virus-producing cells, but not of mature virions or target cells, drives NCINI antiviral potency. NCINIs target an essential late-stage event in HIV replication that is insensitive to LEDGF levels in the producer cells. Virus particles produced in the presence of NCINIs displayed normal Gag-Pol processing and endogenous reverse transcriptase activity, but were defective at initiating vDNA synthesis following entry into the target cell. NCINI-resistant virus carrying a T174I mutation in the IN dimer interface was less sensitive to the compound-induced late-stage effects, including the reverse transcription block. Wild-type, but not T174I virus, produced in the presence of NCINIs exhibited striking defects in core morphology and an increased level of IN oligomers that was not observed upon treatment of mature cell-free particles. Collectively, these results reveal that NCINIs act through a novel mechanism that is unrelated to the previously observed inhibition of IN activity or IN-LEDGF interaction, and instead involves the disruption of an IN function during HIV-1 core maturation and assembly.
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“Class II IN mutations additionally affected viral particle morphology, with the ribonucleoprotein material found outside of the capsid shell, oftentimes in association with the viral membrane131,132,139–142.”
From Structure and function of retroviral integrase (2022) · cites this paper as [142]
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
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“Detailed analysis of virus particles produced in the presence of ALLINIs revealed that although viral RNA and proteins were incorporated properly, IN-RNA binding was disrupted, and the ribonucleoprotein complex was located eccentrically (Fig. 6B)140–142,174–176.”
From Structure and function of retroviral integrase (2022) · cites this paper as [142]
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
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“Counterintuitively, the underlying mode of ALLINI action is not via inhibition of integration140,142,174–177,179–181.”
From Structure and function of retroviral integrase (2022) · cites this paper as [142]
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“The common biochemical consequence of ALLINI binding is aberrant HIV-1 IN hyper-multimerization140,142,174–181.”
From Structure and function of retroviral integrase (2022) · cites this paper as [142]
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“Under these conditions, it became clear that HIV-1 was more susceptible to ALLINIs when exposed to the compounds during egress as compared to ingress140,142,174–176.”
From Structure and function of retroviral integrase (2022) · cites this paper as [142]
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Citations
Cites
A quantitative assay for HIV DNA integration in vivo
Butler, S. L., Hansen, M. S., & Bushman, F. D. (2001) · Nature Medicine · doi:10.1038/87979 · Cited by 695
Integrase inhibitors to treat HIV/Aids
Pommier, Y., Johnson, A. A., & Marchand, C. (2005) · Nature reviews. Drug discovery · doi:10.1038/nrd1660 · Cited by 693
Raltegravir with Optimized Background Therapy for Resistant HIV-1 Infection
Steigbigel, R. T., Cooper, D. A., Kumar, P. N., Eron, J., Schechter, M., Markowitz, M. H., Loutfy, M. R., Lennox, J. L., Gatell, J. M., Rockstroh, J. K., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0708975 · Cited by 691
An essential role for LEDGF/p75 in HIV integration
Llano, M., Saenz, D. T., Meehan, A., Wongthida, P., Peretz, M., Walker, W. H., Teo, W., & Poeschla, E. M. (2006) · Science · doi:10.1126/science.1132319 · Cited by 537
Forshey, B. M., von Schwedler, U. K., Sundquist, W. I., & Aiken, C. (2002) · Journal of Virology · doi:10.1128/jvi.76.11.5667-5677.2002 · Cited by 514
Subgroup and Resistance Analyses of Raltegravir for Resistant HIV-1 Infection
Cooper, D. A., Steigbigel, R. T., Gatell, J. M., Rockstroh, J. K., Katlama, C., Yéni, P., Lazzarin, A., Clotet, B., Kumar, P. N., Eron, J., et al. (2008) · New England Journal of Medicine · doi:10.1056/nejmoa0708978 · Cited by 513
Christ, F., Voet, A., Marchand, A., Nicolet, S., Desimmie, B. A., Marchand, D., Bardiot, D., Van der Veken, N. J., Van Remoortel, B., Strelkov, S. V., et al. (2010) · Nature Chemical Biology · doi:10.1038/nchembio.370 · Cited by 479
A sensitive and specific enzyme-based assay detecting HIV-1 virion fusion in primary T lymphocytes
Cavrois, M., de Noronha, C., & Greene, W. C. (2002) · Nature Biotechnology · doi:10.1038/nbt745 · Cited by 475
Shun, M.-C., Raghavendra, N. K., Vandegraaff, N., Daigle, J. E., Hughes, S., Kellam, P., Cherepanov, P., & Engelman, A. (2007) · Genes & Development · doi:10.1101/gad.1565107 · Cited by 467
Chapter 5 Generation of High-Titer Pseudotyped Retroviral Vectors with Very Broad Host Range
Yee, J., Friedmann, T., & Burns, J. C. (1994) · Methods in cell biology · doi:10.1016/s0091-679x(08)60600-7 · Cited by 449
Flagged first, then by citations
2 of the 54 references couldn’t be matched to a known paper.
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Items 101–131 of 131
Agharbaoui, F. E., Hoyte, A. C., Ferro, S., Gitto, R., Buemi, M. R., Fuchs, J. R., Kvaratskhelia, M., & Luca, L. D. (2016) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2016.07.077 · Cited by 11
A Conformational Escape Reaction of HIV-1 against an Allosteric Integrase Inhibitor
Nakamura, T., Nakamura, T., Amano, M., Miyakawa, T., Yamagata, Y., Matsuoka, M., & Nakata, H. (2020) · Journal of Virology · doi:10.1128/jvi.00486-20 · Cited by 8
Integrase anchors viral RNA to the HIV-1 capsid interior
Singer, M. R., Li, Z., Rey, J. S., Hope, J., Chenavier, F., Cook, N., Punch, E. K., Smith, J., Zhou, Z., Maslen, S., et al. (2026) · Nature · doi:10.1038/s41586-026-10154-x · Cited by 8
Methods for the Analyses of Inhibitor-Induced Aberrant Multimerization of HIV-1 Integrase
Kessl, J. J., Sharma, A., & Kvaratskhelia, M. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-3046-3_10 · Cited by 8
Jing, T., Shan, Z., Dinh, T., Biswas, A., Jang, S., Greenwood, J., Li, M., Zhang, Z., Gray, G., Shin, H. J., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64479-8 · Cited by 15
New designs for HIV-1 integrase inhibitors: a patent review (2018-present)
Taoda, Y., Sugiyama, S., & Seki, T. (2023) · Expert Opinion on Therapeutic Patents · doi:10.1080/13543776.2023.2178300 · Cited by 7
Complex of HIV-1 Integrase with Cellular Ku Protein: Interaction Interface and Search for Inhibitors
Ilgova, E., Galkin, S., Khrenova, M. G., Serebryakova, M. V., Gottikh, M., & Anisenko, A. N. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23062908 · Cited by 7
Rapid In Vitro Evaluation of Antiretroviral Barrier to Resistance at Therapeutic Drug Levels
Mulato, A. S., Hansen, D., Thielen, A., Porter, D., Stepan, G. J., White, K., Daeumer, M., Cihlář, T., & Yant, S. R. (2016) · AIDS Research and Human Retroviruses · doi:10.1089/aid.2016.0071 · Cited by 6
Self-citationMontermoso, S., Eilers, G., Allen, A., Sharp, R., Hwang, Y., Bushman, F. D., Gupta, K., & Duyne, G. D. V. (2025) · Journal of Molecular Biology · doi:10.1016/j.jmb.2025.169224 · Cited by 5
Yang, J., Hao, M., Khan, M. A., Rehman, M. T., Highbarger, H. C., Chen, Q., Goswami, S., Sherman, B. T., Rehm, C. A., Dewar, R. L., et al. (2021) · Viruses · doi:10.3390/v13112331 · Cited by 4
Jing, T., Shan, Z., Dinh, T., Biswas, A., Jang, S., Greenwood, J., Li, M., Zhang, Z., Gray, G., Shin, H. J., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.01.26.577436 · Cited by 4
Oligomerization of Retrovirus Integrases
Grandgenett, D. P., & Aihara, H. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-10-8456-0_10 · Cited by 4
Khoury, L. E., Hage, K. E., Piquemal, J., Fermandjian, S., Maroun, R. G., Gresh, N., & Hobaika, Z. (2019) · PeerJ Physical Chemistry · doi:10.7717/peerj-pchem.6 · Cited by 3
Капуста, К., Sizochenko, N., Anderson, M. L., Kołodziejczyk, W., Voronkov, E. O., Saloni, J., Leszczyński, J., & Hill, G. (2020) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2020.1719203 · Cited by 1
Nakamura, T., Campbell, J. R., Moore, A. R., Otsu, S., Aikawa, H., Tamamura, H., & Mitsuya, H. (2016) · Journal of Virological Methods · doi:10.1016/j.jviromet.2016.07.023 · Cited by 1
Getting IN on Viral RNA Condensation and Virion Maturation
Freed, E. O. (2016) · Cell · doi:10.1016/j.cell.2016.08.013 · Cited by 2
A benchmark for management of drug resistant HIV
Pozniak, A., & Arribas, J. R. (2013) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(13)70113-0
Biological and structural analysis of new potent Integrase-LEDGF allosteric HIV-1 inhibitorsPreprint
Rouzic, E. L., Bonnard, D., Strat, F. L., Batisse, C., Batisse, J., Amadori, C., Chasset, S., Emiliani, S., Ledoussal, B., Ruff, M., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.01.28.523533
Retrointegration2023—Papers from the 7th International Conference on Retroviral Integration
Engelman, A., Grandgenett, D. P., Maertens, G. N., Yoder, K. E., & Kvaratskhelia, M. (2025) · Viruses · doi:10.3390/v17070879
Kehinde, I. O., Madlala, P., Pellicane, G., Rotondo, A., Kehinde, S. O., Faya, M. A., & Soliman, M. E. S. (2025) · Journal of Computational Biophysics and Chemistry · doi:10.1142/s2737416526500432
HIV-1 Integrase During the Time: History of Drugs and Effort for the New Inhibitors’ Identification
Esposito, F., Saccoliti, F., Patacchini, E., & Santo, R. D. (2026) · Topics in medicinal chemistry · doi:10.1007/7355_2026_180
Structural rearrangements of the HIV-1 genomic RNA during maturation of the viral particle
Mailler, É. (2017) · theses.fr (ABES) · doi:10.70675/6ce04440z0ddfz4ad2zbbdbzf94bec9b3db0
Identification of specific phylogenetic properties of HIV-1 M and O integrases
Toccafondi, E. (2022) · theses.fr (ABES) · doi:10.70675/2facab6ezc20az472dz8350z9fb6e718e1d4 · Cited by 1
Molecular basis of the interaction between HIV-1 integrase and viral RNA
Rocchi, C. (2022) · theses.fr (ABES) · doi:10.70675/56a488fez1f79z4d34z81d9z905314a2ca30
The LEDGIN GS-9822 inhibits HIV-2 infection and enhances HIV-2 latency
Bruggemans, A., Vansant, G., Pellaers, E., de Velde, P. V., Christ, F., & Debyser, Z. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.01699-25
Saccoliti, F., Patacchini, E., Cara, E., Zarbo, L., Messore, A., Albano, A., Ruggieri, G., Madia, V. N., Scipione, L., Costi, R., et al. (2026) · ChemMedChem · doi:10.1002/cmdc.70428
BindingDB (2015) · UC San Diego · doi:10.7270/q2k64kmk
BindingDB Entry 50018529: Advances in the development of HIV integrase strand transfer inhibitors.
BindingDB (2024) · UC San Diego · doi:10.7270/q25143gj
Metadata
- Authors
- Balakrishnan, M., Yant, S. R., Tsai, L., O’Sullivan, C., Bam, R. A., Tsai, A., Niedziela-Majka, A., Stray, K. M., Sakowicz, R., & Cihlar, T.
- Affiliations
- Gilead Sciences (United States) (US)
- Corresponding author
- Balakrishnan, Mini
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-09-09
- Volume
- 8
- Issue
- 9
- Pages
- e74163
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3767657
- OpenAlex
- W2053936754
- Cited by
- 126
- References
- 54
- Citations by year
- 2026: 4 · 2025: 5 · 2024: 4 · 2023: 6 · 2022: 11 · 2021: 12 · 2020: 12 · 2019: 9 · 2018: 9 · 2017: 7 · 2016: 17 · 2015: 9 · 2014: 17 · 2013: 4
- FWCI
- 11.92
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, other-oa)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Figshare (submittedVersion, cc-by)
- Topics
- Health Sciences › Medicine › Infectious Diseases › HIV/AIDS drug development and treatment
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Keywords
- HIV-1 integrase, integrase strand transfer inhibitors, LEDGF/p75, viral DNA replication
- MeSH terms
- DNA, Viral, Genetic Vectors, Humans, Luciferases, Mutation, T-Lymphocytes, Transcription Factors, Virion, Virus Replication, HIV-1, Gene Expression, Virus Integration, Genes, Reporter, Virus Assembly, HIV Integrase, HIV Integrase Inhibitors, Drug Resistance, Viral, Cell Line, Tumor, Adaptor Proteins, Signal Transducing, HIV Reverse Transcriptase, Host-Pathogen Interactions
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