Environmental status assessment using DNA metabarcoding: towards a genetics based Marine Biotic Index (gAMBI)
Open accessAbstract
Marine ecosystem protection and conservation initiatives rely on the assessment of ecological integrity and health status of marine environments. The AZTI's Marine Biotic Index (AMBI), which consists on using macroinvertebrate diversity as indicator of ecosystem health, is used worldwide for this purpose. Yet, this index requires taxonomic assignment of specimens, which typically involves a time and resource consuming visual identification of each sample. DNA barcoding or metabarcoding are potential harmonized, faster and cheaper alternatives for species identification, although the suitability of these methods for easing the implementation of the AMBI is yet to be evaluated. Here, we analyze the requirements for the implementation of a genetics based AMBI (gAMBI), and show, using available sequence data, that information about presence/absence of the most frequently occurring species provides accurate AMBI values. Our results set the basics for the implementation of the gAMBI, which has direct implications for a faster and cheaper marine monitoring and health status assessment.
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Initial studies on marine benthic taxa show that presence-absence data is sufficient for precise assessment indices.
“Initial studies on marine benthic taxa show that presence-absence data is sufficient for precise assessment indices [51,52]”
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- Authors
- Aylagas, E., Borja, Á., & Rodríguez-Ezpeleta, N.
- Affiliations
- Tecnalia (ES)
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2014-03-06
- Volume
- 9
- Issue
- 3
- Pages
- e90529
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3946187
- OpenAlex
- W2003510670
- Cited by
- 182
- References
- 48
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 10 · 2023: 19 · 2022: 14 · 2021: 21 · 2020: 15 · 2019: 13 · 2018: 26 · 2017: 17 · 2016: 22 · 2015: 11
- FWCI
- 14.47
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, other-oa)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- AZTI Institutional Repository (submittedVersion, cc-by-nc-sa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Zenodo (CERN European Organization for Nuclear Research) (submittedVersion, cc-by)
- Funders
- European Commission (308392)
- AZTI-Tecnalia
- Topics
- Physical Sciences › Environmental Science › Ecology › Environmental DNA in Biodiversity Studies
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Invertebrate Taxonomy and Ecology
- Keywords
- DNA metabarcoding, DNA barcoding, marine ecosystem health, macroinvertebrate diversity, species identification, environmental monitoring, marine conservation
- MeSH terms
- Animals, DNA Primers, Databases, Genetic, Biodiversity, DNA Barcoding, Taxonomic, Aquatic Organisms
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