Cited by 185Dermatology and Skin DiseasesGut microbiota and healthNail Diseases and Treatments

The Skin Microbiome: A Focus on Pathogens and Their Association with Skin Disease

Open access
Findley, Keisha, Grice, Elizabeth A.·2014·PLoS Pathogens

Abstract

What Is the Human Microbiome and Why Is It Important?Microbes are present in every environmental niche and live in close association with humans and each other.Members of these communities include bacteria, archaea, viruses, fungi, and protists.In the environment, microbes perform various roles and are essential in agriculture and food production.In humans and animals, microbes provide protection against foreign invaders, educate and stimulate the immune response, produce antimicrobials, aid in digestion, and produce vitamins, among a host of other functions.In the last decade, researchers have actively investigated the impact of microbes and their gene products in human health and disease.This field of research is defined as the human microbiome, which is the totality of the microbes and their genes in and on the human body.To better understand the impact of microbes on health and disease, multiple body sites have been investigated, including skin, lungs, the nasal passage, the oral cavity, and the gastrointestinal and urogenital tracts.The results of these studies have revealed that each body site is home to a unique microbial community.Shifts in microbial communities can result from multiple factors, including environment, genetic variation, lifestyle and hygienic factors, and the immune system, and have been associated with many diseases.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1371/journal.ppat.1004436

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • AD is associated with increased abundance of S. aureus in lesions, which interferes with host immunity and damages the skin barrier; psoriasis is associated with abnormal colonization of S. aureus and decreased S. epidermidis abundance in psoriatic lesions; seborrheic dermatitis involves Malassezia in its pathogenesis.

    “Further examples of disease-microbiota association in human skin are AD (where the increased abundance of S. aureus in the lesions interferes with the host immunity, directly damaging the skin barrier), psoriasis (with abnormal colonization of S. aureus and decrease of S. epidermidis abundance in psoriatic lesions), and seborrheic dermatitis (where the most abundant fungal skin commensal, Malassez”

    From Recreating Human Skin In Vitro: Should the Microbiota Be Taken into Account? (2024) · cites this paper as [128]

    Split into 3 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured
  • Alteration of the microbial communities, due to environmental, genetic, lifestyle-associated, hygienic, and immune system-related factors, can lead to a pathological skin condition by making ordinarily beneficial bacteria disease-causing under certain conditions.

    “Indeed, as a result of environmental, genetic, lifestyle-associated, hygienic, and immune system-related factors, the alteration of the microbial communities can lead to a pathological skin condition; it means that these factors can have an impact on ordinarily beneficial bacteria, making them disease-causing under certain conditions [5,128].”

    From Recreating Human Skin In Vitro: Should the Microbiota Be Taken into Account? (2024) · cites this paper as [128]

    Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 21

  1. [1]Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, et al (2009) Bacterial community variation in human body habitats across space and time. Science 326: 1694– 1697. 19892944 PMC3602444
  2. [2]Grice EA, Kong HH, Conlan S, Deming CB, Davis J, et al (2009) Topographical and temporal diversity of the human skin microbiome. Science 324: 1190– 1192. 19478181 PMC2805064
  3. [5]Foulongne V, Sauvage V, Hebert C, Dereure O, Cheval J, et al (2012) Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing. PLoS ONE 7: e38499. 22723863 PMC3378559
  4. [6]Antonsson A, Erfurt C, Hazard K, Holmgren V, Simon M, et al (2003) Prevalence and type spectrum of human papillomaviruses in healthy skin samples collected in three continents. J Gen Virol 84: 1881– 1886. 12810883
  5. [7]Peacock SJ, de Silva I, Lowy FD (2001) What determines nasal carriage of Staphylococcus aureus? Trends Microbiol 9: 605– 610. 11728874
  6. [8]Baba T, Bae T, Schneewind O, Takeuchi F, Hiramatsu K (2008) Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands. J Bacteriol 190: 300– 310. 17951380 PMC2223734
  7. [10]Ong PY, Ohtake T, Brandt C, Strickland I, Boguniewicz M, et al (2002) Endogenous antimicrobial peptides and skin infections in atopic dermatitis. N Engl J Med 347: 1151– 1160. 12374875
  8. [11]Tomida S, Nguyen L, Chiu BH, Liu J, Sodergren E, et al (2013) Pan-genome and comparative genome analyses of propionibacterium acnes reveal its genomic diversity in the healthy and diseased human skin microbiome. MBio 4: e00003– 00013. 23631911 PMC3663185
  9. [12]Shu M, Wang Y, Yu J, Kuo S, Coda A, et al (2013) Fermentation of Propionibacterium acnes, a commensal bacterium in the human skin microbiome, as skin probiotics against methicillin-resistant Staphylococcus aureus. PLoS ONE 8: e55380. 23405142 PMC3566139
  10. [13]Wieland Brown LC, Acker MG, Clardy J, Walsh CT, Fischbach MA (2009) Thirteen posttranslational modifications convert a 14-residue peptide into the antibiotic thiocillin. Proc Natl Acad Sci U S A 106: 2549– 2553. 19196969 PMC2650375
  11. [14]Leyden JJ, McGinley KJ, Vowels B (1998) Propionibacterium acnes colonization in acne and nonacne. Dermatology 196: 55– 58. 9557227
  12. [15]Oh J, Conlan S, Polley EC, Segre JA, Kong HH (2012) Shifts in human skin and nares microbiota of healthy children and adults. Genome Med 4: 77. 23050952 PMC3580446
  13. [16]Fitz-Gibbon S, Tomida S, Chiu BH, Nguyen L, Du C, et al (2013) Propionibacterium acnes strain populations in the human skin microbiome associated with acne. J Invest Dermatol 133: 2152– 2160. 23337890 PMC3745799
  14. [17]Wang Y, Kuo S, Shu M, Yu J, Huang S, et al (2013) Staphylococcus epidermidis in the human skin microbiome mediates fermentation to inhibit the growth of Propionibacterium acnes: implications of probiotics in acne vulgaris. Appl Microbiol Biotechnol 98: 411– 24. 24265031 PMC3888247
  15. [18]Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, et al (2012) Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates. MBio 3: e00279– e00312. PMC3448167 23015740
  16. [19]Gaitanis G, Velegraki A, Mayser P, Bassukas ID (2013) Skin diseases associated with Malassezia yeasts: facts and controversies. Clin Dermatol 31: 455– 463. 23806162
  17. [20]Nakabayashi A, Sei Y, Guillot J (2000) Identification of Malassezia species isolated from patients with seborrhoeic dermatitis, atopic dermatitis, pityriasis versicolor and normal subjects. Med Mycol 38: 337– 341. 11092380
  18. [21]Saunders CW, Scheynius A, Heitman J (2012) Malassezia fungi are specialized to live on skin and associated with dandruff, eczema, and other skin diseases. PLoS Pathog 8: e1002701. 22737067 PMC3380954
  19. [22]Dawson TL Jr (2007) Malassezia globosa and restricta: breakthrough understanding of the etiology and treatment of dandruff and seborrheic dermatitis through whole-genome analysis. J Investig Dermatol Symp Proc 12: 15– 19. 18004291
  20. [23]Clavaud C, Jourdain R, Bar-Hen A, Tichit M, Bouchier C, et al (2013) Dandruff is associated with disequilibrium in the proportion of the major bacterial and fungal populations colonizing the scalp. PLoS ONE 8: e58203. 23483996 PMC3590157
  21. [24]Naik S, Bouladoux N, Wilhelm C, Molloy MJ, Salcedo R, et al (2012) Compartmentalized control of skin immunity by resident commensals. Science 337: 1115– 1119. 22837383 PMC3513834

Cited by

Sorted by citations

Authors
Findley, K., & Grice, E. A.
Affiliations
  • National Human Genome Research Institute (US)
  • University of Pennsylvania (US)
Corresponding author
Grice, Elizabeth A.
Venue
PLoS Pathogens
Published
2014-11-13
Volume
10
Issue
11
Pages
e1004436
ISSN
  • 1553-7366 (ISSN-L)
  • 1553-7374
OpenAlex
W2077881600
Cited by
185
References
5
Citations by year
2026: 7 · 2025: 9 · 2024: 27 · 2023: 17 · 2022: 18 · 2021: 17 · 2020: 26 · 2019: 16 · 2018: 15 · 2017: 16 · 2016: 14 · 2015: 2
FWCI
11.70
Type
journal article
Language
en
Open access
Locations
  • PLoS Pathogens (publishedVersion, public-domain)
  • Europe PMC (PubMed Central) (publishedVersion, public-domain)
  • PubMed Central (publishedVersion, public-domain)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
National Institute of Arthritis and Musculoskeletal and Skin Diseases (R00AR060873)
Topics
  • Health Sciences › Medicine › Dermatology › Dermatology and Skin Diseases
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
  • Health Sciences › Medicine › Epidemiology › Nail Diseases and Treatments
Keywords
skin microbiome, skin pathogens, skin diseases, human microbiome, microbial communities, host-microbe interactions, immune response, microbial diversity, dysbiosis
MeSH terms
Dermatomycoses, Humans, Malassezia, Propionibacterium acnes, Skin, Skin Diseases, Infectious, Staphylococcal Infections, Staphylococcus aureus, Gram-Positive Bacterial Infections, Microbiota

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review