The microbiome extends to subepidermal compartments of normal skin
Open accessAbstract
Commensal microbes on the skin surface influence the behaviour of cells below the epidermis. We hypothesized that bacteria or their products exist below the surface epithelium and thus permit physical interaction between microbes and dermal cells. Here to test this hypothesis, we employed multiple independent detection techniques for bacteria including quantitative PCR, Gram staining, immunofluorescence and in situ hybridization. Bacteria were consistently detectable within the dermis and dermal adipose of normal human skin. Sequencing of DNA from dermis and dermal adipose tissue identified bacterial 16S ribosomal RNA reflective of a diverse and partially distinct microbial community in each skin compartment. These results show the microbiota extends within the dermis, therefore, enabling physical contact between bacteria and various cells below the basement membrane. These observations show that normal commensal bacterial communities directly communicate with the host in a tissue previously thought to be sterile.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The interactive host-microbiome system extends into the living layers of the skin as commensal organisms or their products have been detected in the subcutis in healthy skin.
“This interactive host–microbiome system was thought to be restricted to the stratum corneum, but it has become evident that the system extends further into the living layers of the skin as commensal organisms or their products have been detected in the subcutis in healthy skin.7”
From The Innate Immune System in Acute and Chronic Wounds (2016) · cites this paper as [7]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
Search and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,617 · see citing works
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 19,770 · see citing works
UCHIME improves sensitivity and speed of chimera detection
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr381 · Cited by 15,114 · see citing works
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726 · see citing works
Amann, R., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R., & Stahl, D. A. (1990) · Applied and Environmental Microbiology · doi:10.1128/aem.56.6.1919-1925.1990 · Cited by 3,998 · see citing works
Bacterial Community Variation in Human Body Habitats Across Space and Time
Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I., & Knight, R. (2009) · Science · doi:10.1126/science.1177486 · Cited by 3,231 · see citing works
Topographical and Temporal Diversity of the Human Skin Microbiome
Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., Program, N. C. S., Bouffard, G. G., Blakesley, R. W., Murray, P. R., et al. (2009) · Science · doi:10.1126/science.1171700 · Cited by 2,953 · see citing works
Staphylococcus epidermidis — the 'accidental' pathogen
Otto, M. J. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2182 · Cited by 1,828 · see citing works
Kong, H. H., Oh, J., Deming, C., Conlan, S., Grice, E. A., Beatson, M. A., Nomicos, E., Polley, E. C., Komarow, H. D., Program, N. C. S., et al. (2012) · Genome Research · doi:10.1101/gr.131029.111 · Cited by 1,808 · see citing works
The Toll-like receptor 2 pathway establishes colonization by a commensal of the human microbiota
Round, J. L., Lee, S. M., Li, J., Tran, G., Jabri, B., Chatila, T. A., & Mazmanian, S. K. (2011) · Science · doi:10.1126/science.1206095 · Cited by 1,604 · see citing works
Immune evasion by staphylococci
Foster, T. J. (2005) · Nature Reviews Microbiology · doi:10.1038/nrmicro1289 · Cited by 1,214 · see citing works
Compartmentalized Control of Skin Immunity by Resident Commensals
Naik, S., Bouladoux, N., Wilhelm, C., Molloy, M. J., Salcedo, R., Kastenmuller, W., Deming, C., Quinones, M., Koo, L., Conlan, S., et al. (2012) · Science · doi:10.1126/science.1225152 · Cited by 1,092 · see citing works
ATP drives lamina propria TH17 cell differentiation
Atarashi, K., Nishimura, J., Shima, T., Umesaki, Y., Yamamoto, M., Onoue, M., Yagita, H., Ishii, N., Evans, R., Honda, K., et al. (2008) · Nature · doi:10.1038/nature07240 · Cited by 1,089 · see citing works
A diversity profile of the human skin microbiotaPreprint
Grice, E. A., Kong, H. H., Renaud, G., Young, A., Bouffard, G. G., Blakesley, R. W., Wolfsberg, T. G., Turner, M. L. C., & Segre, J. A. (2008) · Genome Research · doi:10.1101/gr.075549.107 · Cited by 1,026 · see citing works
Commensal bacteria regulate Toll-like receptor 3–dependent inflammation after skin injury
Lai, Y., Di Nardo, A., Nakatsuji, T., Leichtle, A., Yang, Y., Cogen, A. L., Wu, Z.-R., Hooper, L. V., Schmidt, R. R., von Aulock, S., et al. (2009) · Nature Medicine · doi:10.1038/nm.2062 · Cited by 781 · see citing works
Self-citationMolecular analysis of human forearm superficial skin bacterial biota
Gao, Z., Tseng, C., Pei, Z., & Blaser, M. J. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0607077104 · Cited by 660 · see citing works
Dowd, S. E., Wolcott, R. D., Sun, Y., McKeehan, T., Smith, E., & Rhoads, D. D. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003326 · Cited by 562 · see citing works
Diversity of the human skin microbiome early in life
Capone, K. A., Dowd, S. E., Stamatas, G. N., & Nikolovski, J. (2011) · Journal of Investigative Dermatology · doi:10.1038/jid.2011.168 · Cited by 532 · see citing works
Spilker, T., Coenye, T., Vandamme, P. A. R., & LiPuma, J. J. (2004) · Journal of Clinical Microbiology · doi:10.1128/jcm.42.5.2074-2079.2004 · Cited by 514 · see citing works
Hall, J. A., Bouladoux, N. J., Sun, C., Wohlfert, E. A., Blank, R. B., Zhu, Q., Grigg, M. E., Berzofsky, J. A., & Belkaid, Y. (2008) · Immunity · doi:10.1016/j.immuni.2008.08.009 · Cited by 490 · see citing works
Lai, Y., Cogen, A. L., Radek, K. A., Park, H. J., MacLeod, D. T., Leichtle, A., Ryan, A. F., Di Nardo, A., & Gallo, R. L. (2010) · Journal of Investigative Dermatology · doi:10.1038/jid.2010.123 · Cited by 446 · see citing works
Self-citationDetection of prokaryotic mRNA signifies microbial viability and promotes immunity
Sander, L. E., Davis, M. J., Boekschoten, M. V., Amsen, D., Dascher, C. C., Ryffel, B., Swanson, J. A., Müller, M. M., & Blander, J. M. (2011) · Nature · doi:10.1038/nature10072 · Cited by 400 · see citing works
Microbial Symbiosis with the Innate Immune Defense System of the Skin
Gallo, R. L., & Nakatsuji, T. (2011) · Journal of Investigative Dermatology · doi:10.1038/jid.2011.182 · Cited by 387 · see citing works
Self-citationDetection of quorum-sensingN-acyl homoserine lactone signal molecules by bacterial biosensors
Steindler, L., & Venturi, V. (2006) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2006.00501.x · Cited by 378 · see citing works
Wilhelm, K., Cua, A. B., & Maibach, H. I. (1991) · Archives of Dermatology · doi:10.1001/archderm.127.12.1806 · Cited by 341 · see citing works
Skin Barrier Disruption: A Requirement for Allergen Sensitization?
Benedetto, A. D., Kubo, A., & Beck, L. A. (2012) · Journal of Investigative Dermatology · doi:10.1038/jid.2011.435 · Cited by 315 · see citing works
Wanke, I., Steffen, H., Christ, C., Krismer, B., Götz, F., Peschel, A., Schaller, M., & Schittek, B. (2010) · Journal of Investigative Dermatology · doi:10.1038/jid.2010.328 · Cited by 284 · see citing works
Wilhelm, K., Cua, A. B., & Maibach, H. I. (1991) · Archives of Dermatology · doi:10.1001/archderm.1991.04520010052006 · Cited by 245 · see citing works
Nakatsuji, T., Kao, M. C., Zhang, L., Zouboulis, C. C., Gallo, R. L., & Huang, C.-M. (2010) · Journal of Investigative Dermatology · doi:10.1038/jid.2009.384 · Cited by 230 · see citing works
Self-citationExpression of the Peptide Antibiotics Human β Defensin-1 and Human β Defensin-2 in Normal Human Skin
Falconer, A., Ikram, M., Bissett, C. E., Cerio, R., Quinn, A., & Ali, R. S. (2001) · Journal of Investigative Dermatology · doi:10.1046/j.0022-202x.2001.01401.x · Cited by 225 · see citing works
Inducible Toll‐like Receptor and NF‐κB Regulatory Pathway Expression in Human Adipose Tissue
Vitseva, O. I., Tanrıverdi, K., Tchkonia, T., Kirkland, J. L., McDonnell, M. E., Apovian, C. M., Freedman, J. E., & Gokce, N. (2008) · Obesity · doi:10.1038/oby.2008.25 · Cited by 215 · see citing works
Modulation of Gene Expression via Disruption of NF-κB Signaling by a Bacterial Small Molecule
Kravchenko, V. V., Kaufmann, G. F., Mathison, J. C., Scott, D. A., Katz, A. Z., Grauer, D. C., Lehmann, M. D., Meijler, M. M., Janda, K. D., & Ulevitch, R. J. (2008) · Science · doi:10.1126/science.1156499 · Cited by 213 · see citing works
Biesbroek, G., Sanders, E. A. M., Roeselers, G., Wang, X., Caspers, M. P. M., Trzciński, K., Bogaert, D., & Keijser, B. J. F. (2012) · PLoS ONE · doi:10.1371/journal.pone.0032942 · Cited by 196 · see citing works
Bacterial Evasion of Antimicrobial Peptides by Biofilm Formation
Otto, M. J. (2006) · Springer eBooks · doi:10.1007/3-540-29916-5_10 · Cited by 182 · see citing works
Toll-like receptors in the skin
Miller, L. S., & Modlin, R. L. (2007) · Seminars in Immunopathology · doi:10.1007/s00281-007-0061-8 · Cited by 155 · see citing works
ATP drives lamina propria TH17 cell differentiation
新, 幸. (2009) · Cited by 147 · see citing works
Evaluation of the bacterial diversity of Pressure ulcers using bTEFAP pyrosequencing
Smith, D. M., Snow, D. E., Rees, E., Zischkau, A. M., Hanson, J. D., Wolcott, R. D., Sun, Y., White, J. S., G, S. K. C., & Dowd, S. E. (2010) · BMC Medical Genomics · doi:10.1186/1755-8794-3-41 · Cited by 138 · see citing works
Horz, H., Vianna, M. E., Gomes, B. P. F. D. A., & Conrads, G. (2005) · Journal of Clinical Microbiology · doi:10.1128/jcm.43.10.5332-5337.2005 · Cited by 132 · see citing works
Activation of TLR2 Enhances Tight Junction Barrier in Epidermal Keratinocytes
Yuki, T., Yoshida, H., Akazawa, Y., Komiya, A., Sugiyama, Y., & Inoue, S. (2011) · The Journal of Immunology · doi:10.4049/jimmunol.1100058 · Cited by 130 · see citing works
Cultured human melanocytes express functional Toll-like receptors 2–4, 7 and 9
Yu, N., Zhang, S., Zuo, F., Kang, K., Guan, M., & Xiang, L. F. (2009) · Journal of Dermatological Science · doi:10.1016/j.jdermsci.2009.08.003 · Cited by 103 · see citing works
Zouboulis, C. C. (2009) · Dermato-Endocrinology · doi:10.4161/derm.1.2.7804 · Cited by 77 · see citing works
Prediction of the Pathogens That Are the Cause of Pneumonia by the Battlefield Hypothesis
Hirama, T., Yamaguchi, T., Miyazawa, H., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0024474 · Cited by 25 · see citing works
Rapid detection and quantification of Propionibacteriaceae
Goldschmidt, P. L., Ferreira, C. F. M., Degorge, S., et al. (2008) · British Journal of Ophthalmology · doi:10.1136/bjo.2008.146639 · Cited by 22 · see citing works
Iwase, T., Hoshina, S., Seki, K., Shinji, H., Masuda, S., & Mizunoe, Y. (2007) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/j.diagmicrobio.2007.08.009 · Cited by 14 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Byrd, A. L., Belkaid, Y., & Segre, J. A. (2018) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.157 · Cited by 2,806 · see citing works
The Placenta Harbors a Unique Microbiome
Aagaard, K., Ma, J., Antony, K. M., Ganu, R., Petrosino, J., & Versalovic, J. (2014) · Science Translational Medicine · doi:10.1126/scitranslmed.3008599 · Cited by 2,494 · see citing works
“As with other investigators working in previously regarded sterile tissues such as the subepidermis of the skin (42), we have observed commensal bacterial communities that are shaped by host characteristics but are distinct from nearby and closely positioned microbial communities.”
BackgroundLloyd-Price, J., Abu-Ali, G., & Huttenhower, C. (2016) · Genome Medicine · doi:10.1186/s13073-016-0307-y · Cited by 1,891 · see citing works
“Likewise, breast milk [41] and the placenta [42] are of interest for the early establishment of both a healthy microbiome and the potential circulating blood [43] or tissue [44, 45] microbiomes for normal immune control of opportunists.”
BackgroundFrom hairballs to hypotheses–biological insights from microbial networks
Röttjers, L., & Faust, K. (2018) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuy030 · Cited by 724 · see citing works
The microbiome in patients with atopic dermatitis
Paller, A. S., Kong, H. H., Seed, P., Naik, S., Scharschmidt, T. C., Gallo, R. L., Luger, T., & Irvine, A. D. (2019) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2018.11.015 · Cited by 525 · see citing works
Self-citationHost–microbiota interactions in immune-mediated diseases
Ruff, W. E., Greiling, T. M., & Kriegel, M. A. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0367-2 · Cited by 489 · see citing works
Functions of the skin microbiota in health and disease
Sanford, J. A., & Gallo, R. L. (2013) · Seminars in Immunology · doi:10.1016/j.smim.2013.09.005 · Cited by 494 · see citing works
Self-citationγδ T cells in homeostasis and host defence of epithelial barrier tissues
Nielsen, M. M., Witherden, D. A., & Havran, W. L. (2017) · Nature Reviews Immunology · doi:10.1038/nri.2017.101 · Cited by 479 · see citing works
Totté, J. E. E., van der Feltz, W. T., Hennekam, M., van Belkum, A., van Zuuren, E. J., & Pasmans, S. G. M. A. (2016) · British Journal of Dermatology · doi:10.1111/bjd.14566 · Cited by 454 · see citing works
Roslund, M. I., Puhakka, R., Grönroos, M., Nurminen, N., Oikarinen, S., Gazali, A. M., Cinek, O., Kramná, L., Siter, N., Vari, H. K., et al. (2020) · Science Advances · doi:10.1126/sciadv.aba2578 · Cited by 363 · see citing works
“As children in the intervention group were in daily contact with rich ground surface Gammaproteobacterial community on weekdays, and as Gammaproteobacteria position themselves below subepidermal compartments in the skin (34), their skin Gammaproteobacterial content plausibly maintained higher compared to children in s…”
BackgroundNakatsuji, T., Chen, T. H., Two, A. M., Chun, K., Narala, S., Geha, R. S., Hata, T. R., & Gallo, R. L. (2016) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.05.127 · Cited by 365 · see citing works
“We recently observed that bacteria residing on the epidermis can be observed within the dermis of healthy normal human skin (Nakatsuji et al., 2013).”
BackgroundSelf-citationStaphylococcus epidermidis and its dual lifestyle in skin health and infection
Severn, M. M., & Horswill, A. R. (2022) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00780-3 · Cited by 386 · see citing works
Prescott, S. L., Larcombe, D.-L., Logan, A. C., West, C., Burks, W., Caraballo, L., Levin, M., Etten, E. V., Horwitz, P., Kozyrskyj, A., et al. (2017) · World Allergy Organization Journal · doi:10.1186/s40413-017-0160-5 · Cited by 347 · see citing works
“Since the dermis is not a complete barrier, but rather a filter to microbial access to deeper dermal stroma [132], it is not surprising that cutaneous microbes derived from soils, air and plants can influence systemic immune function.”
BackgroundHuman Skin Is the Largest Epithelial Surface for Interaction with Microbes
Gallo, R. L. (2017) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.11.045 · Cited by 338 · see citing works
“A careful study of the skin using laser-capture microdissection and in situ hybridization has revealed that microbes reside not only on the external interfollicular epithelial surface but also on the entire skin appendage surface and even below the basement membrane (Nakatsuji et al., 2013, 2016).”
BackgroundSelf-citationPhotoimmunology: how ultraviolet radiation affects the immune system
Bernard, J. J., Gallo, R. L., & Krutmann, J. (2019) · Nature Reviews Immunology · doi:10.1038/s41577-019-0185-9 · Cited by 329 · see citing works
Self-citationSkin Microbiome Surveys Are Strongly Influenced by Experimental Design
Meisel, J. S., Hannigan, G. D., Tyldsley, A. S., SanMiguel, A. J., Hodkinson, B. P., Zheng, Q., & Grice, E. A. (2016) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.01.016 · Cited by 328 · see citing works
“Other studies have reported the utility of deeper sampling of the skin layers (Nakatsuji et al., 2013).”
BackgroundA commensal strain of Staphylococcus epidermidis protects against skin neoplasia
Nakatsuji, T., Chen, T. H., Butcher, A. M., Trzoss, L., Nam, S., Shirakawa, K. T., Zhou, W. L., Oh, J., Otto, M. J., Fenical, W., et al. (2018) · Science Advances · doi:10.1126/sciadv.aao4502 · Cited by 327 · see citing works
“epidermidis applied was similar to that found on normal human skin (25).”
BackgroundSelf-citationCommensal orthologs of the human autoantigen Ro60 as triggers of autoimmunity in lupus
Greiling, T. M., Dehner, C. A., Chen, X., Hughes, K., Iñiguez, A. J., Boccitto, M., Zegarra-Ruiz, D. F., Renfroe, S. C., Vieira, S. M., Ruff, W. E., et al. (2018) · Science Translational Medicine · doi:10.1126/scitranslmed.aan2306 · Cited by 324 · see citing works
“We could detect these Ro60 commensals deeper than the surface of the epidermis, as was previously shown for the cutaneous microbiome (31).”
BackgroundThe Follicular Skin Microbiome in Patients With Hidradenitis Suppurativa and Healthy Controls
Ring, H. C., Thorsen, J., Saunte, D. M. L., Lilje, B., Bay, L., Riis, P. T., Larsen, N., Andersen, L. O., Nielsen, H. V., Miller, I. M., et al. (2017) · JAMA Dermatology · doi:10.1001/jamadermatol.2017.0904 · Cited by 312 · see citing works
Williams, M. R., Costa, S. K., Zaramela, L. S., Khalil, S., Todd, D. A., Winter, H. L., Sanford, J. A., O’Neill, A. M., Liggins, M. C., Nakatsuji, T., et al. (2019) · Science Translational Medicine · doi:10.1126/scitranslmed.aat8329 · Cited by 292 · see citing works
“aureus penetration into deeper layers of the epidermis and dermis, an event that triggers maximal induction of TH2 and TH17 inflammatory responses in murine AD models (22, 23).”
BackgroundSelf-citationMicrobiome in healthy skin, update for dermatologists
Dréno, B., Araviiskaia, E., Berardesca, E., Gontijo, G., Sanchez Viera, M., Xiang, L. F., Martin, R., & Bieber, T. (2016) · Journal of the European Academy of Dermatology and Venereology · doi:10.1111/jdv.13965 · Cited by 292 · see citing works
The Innate Immune System in Acute and Chronic Wounds
MacLeod, A. S., & Mansbridge, J. N. (2016) · Advances in Wound Care · doi:10.1089/wound.2014.0608 · Cited by 289 · see citing works
“This interactive host–microbiome system was thought to be restricted to the stratum corneum, but it has become evident that the system extends further into the living layers of the skin as commensal organisms or their products have been detected in the subcutis in healthy skin.(7) The composition of the skin microflor…”
BackgroundHost-microbiome interactions and recent progress into understanding the biology of acne vulgaris
O’Neill, A. M., & Gallo, R. L. (2018) · Microbiome · doi:10.1186/s40168-018-0558-5 · Cited by 334 · see citing works
Self-citationCommensal Staphylococci Influence Staphylococcus aureus Skin Colonization and Disease
Parlet, C. P., Severn, M. M., & Horswill, A. R. (2019) · Trends in Microbiology · doi:10.1016/j.tim.2019.01.008 · Cited by 275 · see citing works
“Meanwhile, outside-in movement of microbial components across the SC was revealed by the presence of microbe-derived factors and entire organisms within bona fide dermal territories, which happen to be heavily populated with resident immune cells [24].”
BackgroundLowrey, L., Woodhams, D. C., Tacchi, L., & Salinas, I. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.01826-15 · Cited by 276 · see citing works
“We found a strikingly diverse bacterial community living inside the epithelium, a finding that is in concordance with mammalian studies showing that skin commensals live deep in the dermal layers of the skin (64).”
ResultThe Role of the Skin Microbiome in Atopic Dermatitis
Williams, M. R., & Gallo, R. L. (2015) · Current Allergy and Asthma Reports · doi:10.1007/s11882-015-0567-4 · Cited by 267 · see citing works
Self-citationBiofilm-Innate Immune Interface: Contribution to Chronic Wound Formation
Versey, Z., Nizer, W. S. D. C., Russell, E., Zigic, S., DeZeeuw, K. G., Marek, J. E., Overhage, J., & Cassol, E. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.648554 · Cited by 268 · see citing works
“found the bacterial diversity on the surface was not the same as that in the sub-epidermis, which included high levels of proteobacteria (49).”
BackgroundThe skin microbiome: potential for novel diagnostic and therapeutic approaches to cutaneous disease
Grice, E. A. (2014) · Seminars in Cutaneous Medicine and Surgery · doi:10.12788/j.sder.0087 · Cited by 250 · see citing works
Performing Skin Microbiome Research: A Method to the Madness
Kong, H. H., Andersson, B., Clavel, T., Common, J., Jackson, S. A., Olson, N. D., Segre, J. A., & Traidl‐Hoffmann, C. (2017) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.10.033 · Cited by 226 · see citing works
“In addition to tissue homogenization for total DNA collection, a portion of skin biopsies can be processed for other analyses, possibly laser capture microscopy (Grice et al., 2008; Nakatsuji et al., 2013).”
BackgroundMethodInfluentialCritical role of environmental factors in the pathogenesis of psoriasis
Zeng, J., Luo, S., Huang, Y., & Lu, Q. (2017) · The Journal of Dermatology · doi:10.1111/1346-8138.13806 · Cited by 229 · see citing works
The Cutaneous Microbiome and Wounds: New Molecular Targets to Promote Wound Healing
Johnson, T. R., Gómez, B. I., McIntyre, M. K., Dubick, M. A., Christy, R. J., Nicholson, S. E., & Burmeister, D. M. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19092699 · Cited by 213 · see citing works
“The three main phyla identified in pressure ulcers are similar to that of healthy commensals (e.g., Firmicutes, Proteobacteria, and Actinobacteria) [46].”
BackgroundInfluentialFournière, M., Latire, T., Souak, D., Feuilloley, M. G. J., & Bedoux, G. (2020) · Microorganisms · doi:10.3390/microorganisms8111752 · Cited by 227 · see citing works
“epidermidis is at the level of the stratum corneum and can be found in the epidermal basement membrane in dry, moist and sebaceous regions (see Figure 1) [36,37].”
BackgroundAcinetobacter species in the skin microbiota protect against allergic sensitization and inflammation
Fyhrquist, N., Ruokolainen, L., Suomalainen, A., Lehtimäki, S., Veckman, V., Vendelin, J., Karisola, P., Lehto, M., Savinko, T., Jarva, H., et al. (2014) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2014.07.059 · Cited by 205 · see citing works
Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
Massier, L., Chakaroun, R., Tabei, S., Crane, A., Didt, K. D., Fallmann, J., von Bergen, M., Haange, S.-B., Heyne, H., Stumvoll, M., et al. (2020) · Gut · doi:10.1136/gutjnl-2019-320118 · Cited by 194 · see citing works
Zeeuwen, P. L. J. M., Kleerebezem, M., Timmerman, H. M., & Schalkwijk, J. (2013) · Current Opinion in Allergy and Clinical Immunology · doi:10.1097/aci.0b013e328364ebeb · Cited by 199 · see citing works
Cau, L., Williams, M. R., Butcher, A. M., Nakatsuji, T., Kavanaugh, J. S., Cheng, J. Y., Shafiq, F., Higbee, K., Hata, T. R., Horswill, A. R., et al. (2020) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2020.06.024 · Cited by 187 · see citing works
Self-citationFrom Dysbiosis to Healthy Skin: Major Contributions of Cutibacterium acnes to Skin Homeostasis
Rozas, M., de Ruijter, A. B. P. H., Fábrega, M.-J., Zorgani, A., Güell, M., Paetzold, B., & Brillet, F. (2021) · Microorganisms · doi:10.3390/microorganisms9030628 · Cited by 182 · see citing works
“The outer layer (the stratum corneum), the appendages (sweat and sebaceous glands, hair follicles) [5], and the subepidermal compartments [6] are indeed colonized by a myriad of microorganisms, including, on the skin’s surface, eukaryotes (10%), viruses (30%), and bacteria (60%) (Figure 1A) [7].”
BackgroundLiving in Your Skin: Microbes, Molecules, and Mechanisms
Swaney, M. H., & Kalan, L. (2021) · Infection and Immunity · doi:10.1128/iai.00695-20 · Cited by 187 · see citing works
“the dermis, and adipose tissue (33), metabolite-mediated interactions occur not only at the skin surface but deep within skin layers, as well.”
BackgroundAntibiotic use during pregnancy: how bad is it?
Kuperman, A. A., & Koren, O. (2016) · BMC Medicine · doi:10.1186/s12916-016-0636-0 · Cited by 172 · see citing works
“We are rapidly progressing towards understanding the role of bacteria in novel target organs traditionally considered “sterile”, including the central nervous system [10], blood [11], the lower airways [12], the sub-epidermis [13], and the fetoplacental unit [14].”
BackgroundStaphylococcus aureus Induces Increased Serine Protease Activity in Keratinocytes
Williams, M. R., Nakatsuji, T., Sanford, J. A., Vrbanac, A. F., & Gallo, R. L. (2016) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2016.10.008 · Cited by 170 · see citing works
“…this interaction is important since bacteria not only reside on the surface where they influence superficial keratinocytes, but bacteria also penetrate below the stratum corneum and into the dermis (Nakatsuji et al., 2013) where some bacterial species have been shown to influence immune f nction.”
BackgroundSelf-citationSanford, J. A., Zhang, L.-J., Williams, M. R., Gangoiti, J. A., Huang, C.-M., & Gallo, R. L. (2016) · Science Immunology · doi:10.1126/sciimmunol.aah4609 · Cited by 166 · see citing works
“acnes and can provide the lipid-rich and hypoxic environment necessary for the production of SCFAs (25).”
BackgroundSelf-citationThe role of the skin microbiome in atopic dermatitis
Nakatsuji, T., & Gallo, R. L. (2018) · Annals of Allergy Asthma & Immunology · doi:10.1016/j.anai.2018.12.003 · Cited by 165 · see citing works
Self-citationInteractions between host factors and the skin microbiome
SanMiguel, A. J., & Grice, E. A. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1812-z · Cited by 168 · see citing works
“Although the vast majority of these microorganisms inhabit the stratum corneum, recent evidence has shown that bacterial species may also reside within deeper layers of the epidermis and dermis [35, 53].”
The Microbiome and Food Allergy
Iweala, O. I., & Nagler‐Anderson, C. (2019) · Annual Review of Immunology · doi:10.1146/annurev-immunol-042718-041621 · Cited by 169 · see citing works
Review of human hand microbiome research
Edmonds-Wilson, S. L., Nurinova, N. I., Zapka, C. A., Fierer, N., & Wilson, M. (2015) · Journal of Dermatological Science · doi:10.1016/j.jdermsci.2015.07.006 · Cited by 160 · see citing works
“[28] found bacteria in sub-epidermal compartments of palm skin to have distinct bacterial communities compared to those found on exposed areas of skin.”
BackgroundMethodKell, D. B., & Pretorius, E. (2015) · Integrative Biology · doi:10.1039/c5ib00158g · Cited by 160 · see citing works
“541 The considerable evidence for a dormant CNS microbiome was discussed earlier, and we here note the presence in the brain of TLR4 and its major role in neurodegeneration, 542 consistent with the idea that waking up dormant microbes can stimulate overt neurodegenerative disease.”
Microbial biofilms and the human skin microbiome
Brandwein, M., Steinberg, D., & Meshner, S. (2016) · npj Biofilms and Microbiomes · doi:10.1038/s41522-016-0004-z · Cited by 157 · see citing works
“Additionally, community membership has been shown to be similar throughout the epidermal and dermal layers, exhibiting greater beta-diversity than alpha-diversity.(48,49) These significant observations have shattered the historical paradigm of the skin serving as an almost impermeable barrier for bacterial invasion, w…”
BackgroundMicrobiota at the crossroads of autoimmunity
Shamriz, O., Mizrahi, H., Werbner, M., Shoenfeld, Y., Avni, O., & Koren, O. (2016) · Autoimmunity Reviews · doi:10.1016/j.autrev.2016.07.012 · Cited by 151 · see citing works
“Althoughmost of these bacteria inhabit the upper part of the epidermis, the stratum corneum, bacteriamay also reside within deeper layers of the skin [76,77].”
BackgroundThe Skin Microbiome: A Focus on Pathogens and Their Association with Skin Disease
Findley, K., & Grice, E. A. (2014) · PLoS Pathogens · doi:10.1371/journal.ppat.1004436 · Cited by 185 · see citing works
“Spatially, the skin microbiota may extend to subepidermal compartments [3].”
BackgroundProbiotics in Cosmetic and Personal Care Products: Trends and Challenges
Puebla-Barragan, S., & Reid, G. (2021) · Molecules · doi:10.3390/molecules26051249 · Cited by 143 · see citing works
“There is no single healthy skin microbiome, so what would it take to ”balance” the one that a given individual possessed? Furthermore, the skin has many layers, with microbes being detected in the dermis, adipose, follicle, epidermis [8].”
BackgroundWall Teichoic Acid in Staphylococcus aureus Host Interaction
van Dalen, R., Peschel, A., & van Sorge, N. M. (2020) · Trends in Microbiology · doi:10.1016/j.tim.2020.05.017 · Cited by 139 · see citing works
The Skin Microbiome: Is It Affected by UV-induced Immune Suppression?
Patra, V., Byrne, S. N., & Wolf, P. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01235 · Cited by 137 · see citing works
“Kripke et al. (1977) first discovered that UV-R exposure and immune suppression were linked to UV-induced carcinogenesis (Schwarz, 2010).”
BackgroundMicrobial endocrinology: Host-bacteria communication within the gut microbiome
Sandrini, S., Aldriwesh, M., Alruways, M., & Freestone, P. (2015) · Journal of Endocrinology · doi:10.1530/joe-14-0615 · Cited by 130 · see citing works
“Although the environmental conditions to which skin is exposed can vary considerably, the composition of the skin microbiomes tends to be relatively stable (Nakatsuji et al. 2013), which suggests that the skin through some mechanism actively regulates the microflora that populate it.”
BackgroundSkin Microbiome and its Interplay with the Environment
Callewaert, C., Helffer, K. R., & Lebaron, P. (2020) · American Journal of Clinical Dermatology · doi:10.1007/s40257-020-00551-x · Cited by 135 · see citing works
Rebollar, E. A., Antwis, R. E., Becker, M. H., Belden, L. K., Bletz, M. C., Brucker, R. M., Harrison, X. A., Hughey, M. C., Kueneman, J. G., Loudon, A. H., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00068 · Cited by 134 · see citing works
“Warmer temperatures can increase the skin sloughing frequency of anurans, thus reducing the abundance of bacteria on the skin through frequent disturbance (Meyer et al., 2012; Ohmer et al., 2014).”
BackgroundWang, Z., Mascarenhas, N., Eckmann, L., Miyamoto, Y., Sun, X., Kawakami, T., & Nardo, A. D. (2016) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2016.09.019 · Cited by 130 · see citing works
“This contact allows normal commensal bacteria to directly communicate with dermal cells in a site previously thought to be sterile.(11) The gram-positive Actinobacteria phylum constitutes the majority of the skin microbiota.”
Effects of sampling strategy and DNA extraction on human skin microbiome investigations
Bjerre, R. D., Hugerth, L. W., Boulund, F., Seifert, M., Johansen, J. D., & Engstrand, L. G. (2019) · Scientific Reports · doi:10.1038/s41598-019-53599-z · Cited by 125 · see citing works
Oral and Topical Probiotics and Postbiotics in Skincare and Dermatological Therapy: A Concise Review
Almeida, C. V. D., Antiga, E., & Lulli, M. (2023) · Microorganisms · doi:10.3390/microorganisms11061420 · Cited by 134 · see citing works
“Microorganisms, however, occupy a wide range of skin niches and in addition to the external interfollicular epithelial surface, they can also be found on the skin appendage surface and below the basement membrane [30,31].”
BackgroundGrice, E. A. (2015) · Genome Research · doi:10.1101/gr.191320.115 · Cited by 122 · see citing works
“, sebaceous and sweat glands), an innovative approach demonstrated that microbial products are present in subepidermal compartments of the dermis and adipose tissue (Nakatsuji et al. 2013).”
BackgroundDermal White Adipose Tissue: A Newly Recognized Layer of Skin Innate Defense
Chen, S., Zhang, L., & Gallo, R. L. (2019) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2018.12.031 · Cited by 120 · see citing works
“New insight into the biological significance of reactive adipogenesis was gained when 16s rRNA sequencing technologies and histopathologic staining showed that bacteria often enter the reticular dermis and subcutaneous compartments of normal human skin (Nakatsuji et al., 2013).”
BackgroundSelf-citationImpaired Intestinal Barrier and Tissue Bacteria: Pathomechanisms for Metabolic Diseases
Massier, L., Blüher, M., Kovacs, P. L., & Chakaroun, R. (2021) · Frontiers in Endocrinology · doi:10.3389/fendo.2021.616506 · Cited by 124 · see citing works
Tong, P. L., Roediger, B., Kolesnikoff, N., Biro, M., Tay, S. S., Jain, R., Shaw, L. E., Grimbaldeston, M. A., & Weninger, W. (2014) · Journal of Investigative Dermatology · doi:10.1038/jid.2014.289 · Cited by 115 · see citing works
“Thus, with MPM, we can detect structural features such as epidermal thickness and topography of the DEJ in situ without tissue processing or counter-staining to generate 3D tissue stacks of intact murine skin.”
InfluentialMicrobiota, immunoregulatory old friends and psychiatric disorders
Rook, G. A. W., Raison, C. L., & Lowry, C. A. (2014) · Advances in Experimental Medicine and Biology · doi:10.1007/978-1-4939-0897-4_15 · Cited by 117 · see citing works
Staphylococcus epidermidis and Other Coagulase-Negative Staphylococci
Rupp, M. E., & Fey, P. D. (2015) · Elsevier eBooks · doi:10.1016/b978-1-4557-4801-3.00197-1 · Cited by 118 · see citing works
Propionibacterium in Shoulder Arthroplasty
Hsu, J. E., Bumgarner, R. E., & Matsen, F. A. (2016) · Journal of Bone and Joint Surgery · doi:10.2106/jbjs.15.00568 · Cited by 118 · see citing works
Skin immunity: dissecting the complex biology of our body's outer barrier
Zhang, C., Merana, G. R., Harris-Tryon, T. A., & Scharschmidt, T. C. (2022) · Mucosal Immunology · doi:10.1038/s41385-022-00505-y · Cited by 118 · see citing works
Immune-Microbiota Interactions: Dysbiosis as a Global Health Issue
Logan, A. C., Jacka, F. N., & Prescott, S. L. (2016) · Current Allergy and Asthma Reports · doi:10.1007/s11882-015-0590-5 · Cited by 114 · see citing works
Universal Dermal Microbiome in Human Skin
Bay, L., Barnes, C. J., Fritz, B. G., Thorsen, J., Restrup, M. E. M., Rasmussen, L., Sørensen, J. K., Hesselvig, A. B., Odgaard, A., Hansen, A. J., et al. (2020) · mBio · doi:10.1128/mbio.02945-19 · Cited by 117 · see citing works
“Few investigations have examined the distribution of the microbiota in full-thickness skin biopsy specimens (9) or within subepidermal compartments (2) A complete characterization of the composition and distribution of the entire skin microbiota (1) within various cutaneous compartments and structures is essential in…”
Williams, M. R., Cau, L., Wang, Y., Kaul, D., Sanford, J. A., Zaramela, L. S., Khalil, S., Butcher, A. M., Zengler, K., Horswill, A. R., et al. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.02.021 · Cited by 113 · see citing works
Self-citationThe diversity and host interactions of Propionibacterium acnes bacteriophages on human skin
Liu, J., Yan, R., Zhong, Q., Ngo, S., Bangayan, N. J., Nguyen, L., Lui, T., Liu, M., Erfe, M. C. B., Craft, N. A., et al. (2015) · The ISME Journal · doi:10.1038/ismej.2015.47 · Cited by 111 · see citing works
“Although the skin bacterial community has been studied by several groups (Gao et al., 2007; Costello et al., 2009; Grice et al., 2009; Kong et al., 2012; The Human Microbiome Project Consortium, 2012; Blaser et al., 2013; Fitz-Gibbon et al., 2013; Nakatsuji et al., 2013), relatively few studies have characterized the…”
BackgroundInfluentialC-Type Lectin Receptors in Host Defense Against Bacterial Pathogens
Mnich, M. E., van Dalen, R., & van Sorge, N. M. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00309 · Cited by 112 · see citing works
“Immune cells of the skin constantly interact with microbes and their products, even deeper within the tissue, without causing infection or inflammation (Nakatsuji et al., 2013).”
BackgroundSkin microbiome transplantation and manipulation: Current state of the art
Callewaert, C., Knödlseder, N., Karoglan, A., Güell, M., & Paetzold, B. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.01.001 · Cited by 114 · see citing works
“Additionally, Nakatsuji et al found higher amounts of bacterial DNA in hair follicles than on skin epidermis [37,38].”
BackgroundThe Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens
Severn, M. M., Williams, M. R., Shahbandi, A., Bunch, Z. L., Lyon, L. M., Nguyen, A., Zaramela, L. S., Todd, D. A., Zengler, K., Cech, N. B., et al. (2022) · mBio · doi:10.1128/mbio.00930-22 · Cited by 111 · see citing works
Self-citationHoffmann, A. R., Proctor, L. M., Surette, M. G., & Suchodolski, J. S. (2015) · Veterinary Pathology · doi:10.1177/0300985815595517 · Cited by 112 · see citing works
“By utilizing 16 S rRNA sequencing, Gram staining, and FISH analysis, bacterial DNA and antigen were detected within the dermis and subcutaneous tissues in humans.(91) However, due to the methods used in this study, it was not possible to conclude whether live bacteria inhabit these regions.”
MethodHoward, B. W., Bascom, C. C., Hu, P., Binder, R. L., Fadayel, G. M., Huggins, T. G., Jarrold, B. B., Osborne, R., Rocchetta, H. L., Swift, D. D., et al. (2021) · Journal of Investigative Dermatology · doi:10.1016/j.jid.2021.11.029 · Cited by 109 · see citing works
“DISCUSSION Human skin has the most diverse microbiome of all human tissues, resulting from its ready exposure to the environment, constantly changing conditions, and the variety of niches available for microbial colonization (Alexeyev, 2013; Blaser et al., 2013; Chen and Tsao, 2013; Christensen and Brüggemann, 2014; F…”
BackgroundThe gut-skin axis: a bi-directional, microbiota-driven relationship with therapeutic potential
Jimenez-Sanchez, M., Celiberto, L. S., Yang, H., Sham, H. P., & Vallance, B. A. (2025) · Gut Microbes · doi:10.1080/19490976.2025.2473524 · Cited by 131 · see citing works
The Association of the Skin Microbiota With Health, Immunity, and Disease
Egert, M., Simmering, R., & Riedel, C. U. (2017) · Clinical Pharmacology & Therapeutics · doi:10.1002/cpt.698 · Cited by 110 · see citing works
Melanoma-related changes in skin microbiome
Mrázek, J., Mekadim, C., Kučerová, P., Švejstil, R., Salmonová, H. Š., Vlasáková, J., Tarasová, R., Čížková, J., & Červinková, M. (2018) · Folia Microbiologica · doi:10.1007/s12223-018-00670-3 · Cited by 108 · see citing works
Mechanisms of microbe-immune system dialogue within the skin
Lunjani, N., Ahearn-Ford, S., Dube, F. S., Hlela, C., & O’Mahony, L. (2021) · Genes and Immunity · doi:10.1038/s41435-021-00133-9 · Cited by 106 · see citing works
“DNA from Proteobacteria, including Burkholderiales and Pseudomonadales, as well as Actinobacteria, have been detected in the subepidermal compartments [20].”
BackgroundPereira, S. G., Moura, J., Carvalho, E., & Empadinhas, N. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01791 · Cited by 105 · see citing works
“Interestingly, bacteria, or at least bacterial genes, have also been identified in the subepidermal layers of the skin (Nakatsuji et al., 2013) reinforcing the close interaction of the skin microbiota with cells of the inner layers of the skin and their anticipated mutual regulation.”
BackgroundActivation of Nrf2 in keratinocytes causes chloracne (MADISH)-like skin disease in mice
Schäfer, M., Willrodt, A., Kurinna, S., Link, A. S., Farwanah, H., Geusau, A., Gruber, F., Sorg, O., Huebner, A. J., Roop, D. R., et al. (2014) · EMBO Molecular Medicine · doi:10.1002/emmm.201303281 · Cited by 98 · see citing works
Effects of cosmetics on the skin microbiome of facial cheeks with different hydration levels
Lee, H. J., Jeong, S. E., Lee, S., Kim, S., Han, H., & Jeon, C. O. (2017) · MicrobiologyOpen · doi:10.1002/mbo3.557 · Cited by 101 · see citing works
“…and ***p < 0.001 Betaproteobacteria possibly including the genus Ralstonia was prominent in subepidermal compartments containing high lipid content (Nakatsuji et al., 2013), the dominance of Ralstonia in the human skin microbiome was not reported until now, suggesting that the dominance of…”
BackgroundInfluentialStaphylococcus aureus and the Cutaneous Microbiota Biofilms in the Pathogenesis of Atopic Dermatitis
Domenico, E. G. D., Cavallo, I., Capitanio, B., Ascenzioni, F., Pimpinelli, F., Morrone, A., & Ensoli, F. (2019) · Microorganisms · doi:10.3390/microorganisms7090301 · Cited by 99 · see citing works
Metabolic Stress Drives Keratinocyte Defenses against Staphylococcus aureus Infection
Wickersham, M., Wachtel, S., Lung, T. W. F., Soong, G., Jacquet, R., Richardson, A. R., Parker, D., & Prince, A. S. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.02.055 · Cited by 96 · see citing works
“, 2016), intercalation within the layers of the epidermis (Nakatsuji et al., 2013), and intracellular persistence within keratinocytes (Soong et al.”
BackgroundBerditsch, M., Jäger, T., Strempel, N., Schwartz, T., Overhage, J., & Ulrich, A. S. (2015) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00682-15 · Cited by 97 · see citing works
“aeruginosa is a part of normal human skin microbiota (67).”
BackgroundAskarian, F., Ajayi, C., Hanssen, A.-M., van Sorge, N. M., Pettersen, I., Diep, D. B., Ericson, J. U., & Johannessen, M. (2016) · Scientific Reports · doi:10.1038/srep22134 · Cited by 97 · see citing works
Recentrifuge: Robust comparative analysis and contamination removal for metagenomics
Martí, J. M. (2019) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1006967 · Cited by 97 · see citing works
Deodorants and antiperspirants affect the axillary bacterial community
Callewaert, C., Hutapea, P. P., de Wiele, T. V., & Boon, N. (2014) · Archives of Dermatological Research · doi:10.1007/s00403-014-1487-1 · Cited by 93 · see citing works
“Research has shown that bacteria are present in the dermis and the dermal adipose of the human skin [25].”
BackgroundMicrobiome: Role in Inflammatory Skin Diseases
Zhang, X.-E., Zheng, P., Ye, S., Ma, X., Liu, E., Pang, Y.-B., He, Q., Zhang, Y., Li, W.-Q., Zeng, J., et al. (2024) · Journal of Inflammation Research · doi:10.2147/jir.s441100 · Cited by 101 · see citing works
“18 A more comprehensive understanding of the human skin microbiome and its interactions with the innate and adaptive immune systems will enhance our comprehension of these diseases and provide opportunities for new treatment modalities.”
Lunjani, N., Hlela, C., & O’Mahony, L. (2019) · Current Opinion in Allergy & Clinical Immunology · doi:10.1097/aci.0000000000000542 · Cited by 93 · see citing works
“Below the epidermis are several layers that form part of the skin barrier, profoundly affecting function and also harboring microbes [21].”
BackgroundRole of the skin microbiome in atopic dermatitis
Salava, A., & Lauerma, A. (2014) · Clinical and Translational Allergy · doi:10.1186/2045-7022-4-33 · Cited by 95 · see citing works
“There have also been reports of detection of 16S ribosomal RNA in deep skin layers, indicating that the microbiome could extend to subepidermal compartments of normal skin [13].”
BackgroundSkin-Associated B Cells in Health and Inflammation
Debes, G. F., & McGettigan, S. E. (2019) · The Journal of Immunology · doi:10.4049/jimmunol.1801211 · Cited by 94 · see citing works
Environmental risk factors and epigenetic alternations in psoriasis
Roszkiewicz, M., Dopytalska, K., Szymańska, E., Jakimiuk, A. J., & Walecka, I. (2019) · Annals of Agricultural and Environmental Medicine · doi:10.26444/aaem/112107 · Cited by 95 · see citing works
“Staphylococcus and Streptococcus are most commonly seen, even in all layers of the skin [10, 59].”
BackgroundLangan, E. A., Künstner, A., Miodovnik, M., Zillikens, D., Thaçi, D., Baines, J. F., Ibrahim, S. M., Solbach, W., & Knobloch, J. K. ‐. (2019) · British Journal of Dermatology · doi:10.1111/bjd.17989 · Cited by 90 · see citing works
Bitschar, K., Wolz, C., Krismer, B., Peschel, A., & Schittek, B. (2017) · Journal of Dermatological Science · doi:10.1016/j.jdermsci.2017.06.003 · Cited by 90 · see citing works
“Indeed, skin commensals were shown to penetrate the skin and reside within the dermis and the dermal adipose tissue of healthy human skin where they can directly and physically interact with host immune cells and influence the innate and adaptive immune system [46].”
BackgroundScalp bacterial shift in Alopecia areata
Pinto, D., Sorbellini, E., Marzani, B., Rucco, M., Giuliani, G., & Rinaldi, F. (2019) · PLoS ONE · doi:10.1371/journal.pone.0215206 · Cited by 89 · see citing works
Revealing the secret life of skin ‐ with the microbiome you never walk alone
Sfriso, R., Egert, M., Gempeler, M., Voegeli, R., & Campiche, R. (2019) · International Journal of Cosmetic Science · doi:10.1111/ics.12594 · Cited by 90 · see citing works
“The human skin is one of the largest organs of the body corresponding to a surface of 2 m(2) which extends to approximately 25 m(2) considering the plethora of hair follicles and sweat ducts [1,2].”
BackgroundResultHoffmann, A. R. (2017) · Veterinary Dermatology · doi:10.1111/vde.12408 · Cited by 87 · see citing works
Skin Microbiome as Years Go By
Luna, P. C. (2020) · American Journal of Clinical Dermatology · doi:10.1007/s40257-020-00549-5 · Cited by 90 · see citing works
The role of the skin microbiome in wound healing
Yang, Y., Huang, J., Zeng, A., Long, X., Yu, N., & Wang, X. (2023) · Burns & Trauma · doi:10.1093/burnst/tkad059 · Cited by 93 · see citing works
“…of Proteobacteria and Actinobacteria and a lower abundance of Firmicutes were observed in facial and palm skin samples from 6 healthy individuals [18], and Clostridiales and Bacteroidetes were found to be enriched in deep skin biopsies from 16 patients with noninflammatory skin diseases [20].”
Background
- Authors
- Nakatsuji, T., Chiang, H.-I., Jiang, S. B., Nagarajan, H., Zengler, K., & Gallo, R. L.
- Affiliations
- University of California San Diego (US)
- National Chung Hsing University (TW)
- Corresponding author
- Gallo, Richard L.
- Venue
- Nature Communications
- Published
- 2013-02-05
- Volume
- 4
- Issue
- 1
- Pages
- 1431-1431
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC3655727
- OpenAlex
- W2099780103
- Cited by
- 450
- References
- 45
- Citations by year
- 2026: 11 · 2025: 26 · 2024: 34 · 2023: 27 · 2022: 46 · 2021: 49 · 2020: 50 · 2019: 39 · 2018: 33 · 2017: 30 · 2016: 47 · 2015: 28 · 2014: 25 · 2013: 5
- FWCI
- 41.08
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- National Institutes of Health
- National Institute of Allergy and Infectious Diseases (R01AI052453, R56AI083358, R01AI083358, R37AI052453)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (R01AR052728)
- Topics
- Health Sciences › Medicine › Dermatology › Dermatology and Skin Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- skin microbiome, dermis, commensal bacteria, bacterial 16S rRNA, bacterial diversity, basement membrane, host-microbe interactions, skin immune system
- MeSH terms
- Aged, Bacteria, DNA, Bacterial, Epidermis, Face, Female, Humans, Male, Middle Aged, RNA, Ribosomal, 16S, In Situ Hybridization, Sequence Analysis, DNA, Metagenome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review