The US Federal Tox21 Program: A strategic and operational plan for continued leadership
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The traditional approaches to toxicity testing have posed multiple challenges for evaluating the safety of commercial chemicals, pesticides, food additives/contaminants, and medical products.The challenges include number of chemicals that need to be tested, time and resource intensive nature of traditional toxicity tests, and unexpected adverse effects that occur in pharmaceutical clinical trials despite the extensive toxicological testing.Over a decade ago, the U.S. Environmental Protection Agency (EPA), National Toxicology Program (NTP), National Center for Advancing Translational Sciences (NCATS), and the Food and Drug Administration (FDA) formed a federal consortium for "Toxicology in the 21st Century" (Tox21) with a focus on developing and evaluating in vitro high-throughput screening (HTS) methods for hazard identification and providing mechanistic insights.The Tox21 consortium generated data on thousands of pharmaceuticals and datapoor chemicals, developed better understanding of the limits and applications of in vitro methods, and enabled incorporation of HTS data into regulatory decisions. To more broadly address the challenges in toxicology, Tox21 has developed a new strategic and operational plan that expands the focus of its research activities. The new focus areas include developing an expanded portfolio of alternative test systems, addressing technical limitations of in vitrotest systems, curating legacy in vivo toxicity testing data, establishing scientific confidence in the in vitrotest systems, and refining alternative methods for characterizing pharmacokinetics and in vitro assay disposition.The new Tox21 strategic and operational plan addresses key challenges to advance toxicology testing and will benefit both the organizations involved and the toxicology community.
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Animal experiments offer little guidance to human toxicity reactions due to inter-species differences and differential disease models.
“the results offer little guidance to human toxicity reactions, due to inter-species differences and differential disease models [6,7].”
From Machine Learning Based Toxicity Prediction: From Chemical Structural Description to Transcriptome Analysis (2018) · cites this paper as [9]
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Bhatia, S. N., & Ingber, D. E. (2014) · Nature Biotechnology · doi:10.1038/nbt.2989 · Cited by 3,305 · see citing works
Ammonia Clathrate Hydrate As Seen from Grand Canonical Monte Carlo Simulations
Fábián, B., Picaud, S., Jedlovszky, P., Guilbert-Lepoutre, A., & Mousis, O. J. (2018) · ACS Earth and Space Chemistry · doi:10.1021/acsearthspacechem.7b00133 · Cited by 1,699 · see citing works
ToxCast Chemical Landscape: Paving the Road to 21st Century Toxicology
Richard, A. M., Judson, R., Houck, K. A., Grulke, C., Volarath, P., Thillainadarajah, I., Yang, C., Rathman, J. F., Martin, M. T., Wambaugh, J. F., et al. (2016) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.6b00135 · Cited by 714 · see citing works
Self-citationAre animal models predictive for humans?
Shanks, N., Greek, R., & Greek, J. (2009) · Philosophy, Ethics, and Humanities in Medicine · doi:10.1186/1747-5341-4-2 · Cited by 677 · see citing works
Transforming Environmental Health Protection
Collins, F. S., Gray, G. M., & Bucher, J. R. (2008) · Science · doi:10.1126/science.1154619 · Cited by 630 · see citing works
Improving the Human Hazard Characterization of Chemicals: A Tox21 Update
Tice, R. R., Austin, C. P., Kavlock, R. J., & Bucher, J. R. (2013) · Environmental Health Perspectives · doi:10.1289/ehp.1205784 · Cited by 619 · see citing works
Kavlock, R. J., Chandler, K. J., Houck, K. A., Hunter, S., Judson, R., Kleinstreuer, N., Knudsen, T. B., Martin, M. T., Padilla, S., Reif, D. M., et al. (2012) · Chemical Research in Toxicology · doi:10.1021/tx3000939 · Cited by 496 · see citing works
Multidimensional In Vivo Hazard Assessment Using Zebrafish
Truong, L., Reif, D. M., Mary, L. S., Geier, M. C., Truong, H. D., & Tanguay, R. L. (2013) · Toxicological Sciences · doi:10.1093/toxsci/kft235 · Cited by 330 · see citing works
Zebrafish developmental screening of the ToxCast™ Phase I chemical library
Padilla, S., Corum, D. G., Padnos, B. K., Hunter, D. L., Beam, A. L., Houck, K. A., Sipes, N. S., Kleinstreuer, N., Knudsen, T. B., Dix, D. J., et al. (2011) · Reproductive Toxicology · doi:10.1016/j.reprotox.2011.10.018 · Cited by 318 · see citing works
Screening Chemicals for Estrogen Receptor Bioactivity Using a Computational Model
Browne, P., Judson, R. S., Casey, W. M., Kleinstreuer, N. C., & Thomas, R. S. (2015) · Environmental Science & Technology · doi:10.1021/acs.est.5b02641 · Cited by 276 · see citing works
Self-citationToxicity Testing in the 21st Century: Implications for Human Health Risk Assessment
Kavlock, R. J., Austin, C. P., & Tice, R. R. (2008) · Risk Analysis · doi:10.1111/j.1539-6924.2008.01168.x · Cited by 239 · see citing works
Biokinetic Modeling and in Vitro – in Vivo Extrapolations
Blaauboer, B. J. (2010) · Journal of Toxicology and Environmental Health Part B · doi:10.1080/10937404.2010.483940 · Cited by 168 · see citing works
Perspectives on validation of high-throughput assays supporting 21st century toxicity testing
Judson, R. (2013) · ALTEX · doi:10.14573/altex.2013.1.051 · Cited by 151 · see citing works
Ramaiahgari, S., Suramya Waidyanatha, A., Dixon, D., DeVito, M. J., Paules, R. S., & Ferguson, S. (2017) · Toxicological Sciences · doi:10.1093/toxsci/kfx122 · Cited by 147 · see citing works
Toxicokinetic Triage for Environmental Chemicals
Wambaugh, J. F., Wetmore, B. A., Pearce, R., Strope, C. L., Goldsmith, R., Sluka, J. P., Sedykh, A., Tropsha, A., Bosgra, S., Shah, I., et al. (2015) · Toxicological Sciences · doi:10.1093/toxsci/kfv118 · Cited by 143 · see citing works
Self-citationAbdo, N. M., Xia, M., Brown, C., Kosyk, O., Huang, R., Sakamuru, S., Zhou, Y., Jack, J. R., Gallins, P. J., Xia, K., et al. (2015) · Environmental Health Perspectives · doi:10.1289/ehp.1408775 · Cited by 118 · see citing works
A Curated Database of Rodent Uterotrophic Bioactivity
Kleinstreuer, N., Ceger, P. C., Allen, D., Strickland, J. A., Chang, X., Hamm, J. T., & Casey, W. (2015) · Environmental Health Perspectives · doi:10.1289/ehp.1510183 · Cited by 118 · see citing works
Toxicity testing in the 21st century beyond environmental chemicals
Rovida, C. (2015) · ALTEX · doi:10.14573/altex.1506201 · Cited by 106 · see citing works
Prediction of human population responses to toxic compounds by a collaborative competition
Eduati, F., Mangravite, L. M., Wang, T., Tang, H., Bare, J. C., Huang, R., Norman, T., Kellen, M., Menden, M. P., Yang, J., et al. (2015) · Nature Biotechnology · doi:10.1038/nbt.3299 · Cited by 95 · see citing works
Prediction of Human Population Responses to Toxic Compounds by a Collaborative Competition
Bynagari, N. B. (2017) · Asian Journal of Humanity Art and Literature · doi:10.18034/ajhal.v4i2.577 · Cited by 91 · see citing works
Hoffmann, S., Kinsner‐Ovaskainen, A., Prieto, P., Mangelsdorf, I., Bieler, C. A., & Cole, T. (2010) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2010.08.004 · Cited by 76 · see citing works
Chiu, W. A. (2017) · ALTEX · doi:10.14573/altex.1703231 · Cited by 75 · see citing works
Griesinger, C. B., Desprez, B., Coecke, S., Casey, W., & Zuang, V. (2016) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-33826-2_4 · Cited by 64 · see citing works
Knight, A. (2007) · ALTEX · doi:10.14573/altex.2007.4.320 · Cited by 60 · see citing works
Microphysiological Systems (“Organs‐on‐Chips”) for Drug Efficacy and Toxicity Testing
Low, L. A., & Tagle, D. A. (2017) · Clinical and Translational Science · doi:10.1111/cts.12444 · Cited by 54 · see citing works
Ramaiahgari, S., Suramya Waidyanatha, A., Dixon, D., DeVito, M. J., Paules, R. S., & Ferguson, S. (2017) · Toxicological Sciences · doi:10.1093/toxsci/kfx194 · Cited by 44 · see citing works
mRNA transfection retrofits cell-based assays with xenobiotic metabolism
DeGroot, D. E., Swank, A., Thomas, R. S., Strynar, M. J., Lee, M.-Y., Carmichael, P. L., & Simmons, S. O. (2018) · Journal of Pharmacological and Toxicological Methods · doi:10.1016/j.vascn.2018.03.002 · Cited by 42 · see citing works
Self-citationIn Vitro Screening for Population Variability in Chemical Toxicity
O'Shea, S. H., Schwarz, J., Kosyk, O., Ross, P. K., Ha, M. J., Wright, F. A., & Rusyn, I. (2010) · Toxicological Sciences · doi:10.1093/toxsci/kfq322 · Cited by 37 · see citing works
Tilley, S. K., Reif, D. M., & Fry, R. C. (2017) · Environment International · doi:10.1016/j.envint.2016.10.006 · Cited by 24 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- NRC. 1984 Toxicity testing: Strategies to determine needs and priorities. Washington, D.C.: National Research Council of the National Academies. 25032410
Cited by
Sorted by citations
Recent advances and applications of deep learning methods in materials science
Choudhary, K., DeCost, B., Chen, C., Jain, A., Tavazza, F., Cohn, R., Park, C. W., Choudhary, A., Agrawal, A., Billinge, S. J. L., et al. (2022) · npj Computational Materials · doi:10.1038/s41524-022-00734-6 · Cited by 1,172 · see citing works
“gov/resources/ [82] CCCBDB 2069 https://cccbdb.”
Drug Design by Pharmacophore and Virtual Screening Approach
Giordano, D., Biancaniello, C., Argenio, M. A., & Facchiano, A. M. (2022) · Pharmaceuticals · doi:10.3390/ph15050646 · Cited by 410 · see citing works
New approach methodologies in human regulatory toxicology – Not if, but how and when!
Schmeisser, S., Miccoli, A., von Bergen�, M., Berggren, E., Braeuning, A., Busch, W., Desaintes, C., Gourmelon, A., Grafström, R., Harrill, J., et al. (2023) · Environment International · doi:10.1016/j.envint.2023.108082 · Cited by 409 · see citing works
Self-citationThomas, R. S., Bahadori, T., Buckley, T. J., Cowden, J., Deisenroth, C., Dionisio, K. L., Frithsen, J. B., Grulke, C., Gwinn, M. R., Harrill, J., et al. (2019) · Toxicological Sciences · doi:10.1093/toxsci/kfz058 · Cited by 386 · see citing works
Self-citationToxicity testing in the 21st century: progress in the past decade and future perspectives
Krewski, D. R., Andersen, M. E., Tyshenko, M. G., Krishnan, K., Härtung, T., Boekelheide, K., Wambaugh, J. F., Jones, D. P., Whelan, M., Thomas, R. S., et al. (2019) · Archives of Toxicology · doi:10.1007/s00204-019-02613-4 · Cited by 384 · see citing works
Self-citationThe Tox21 10K Compound Library: Collaborative Chemistry Advancing Toxicology
Richard, A. M., Huang, R., Waidyanatha, S., Shinn, P., Collins, B. J., Thillainadarajah, I., Grulke, C. M., Williams, A. J., Lougee, R. R., Judson, R. S., et al. (2021) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.0c00264 · Cited by 323 · see citing works
Self-citationFriedman, K. P., Gagne, M., Loo, L., Karamertzanis, P. G., Netzeva, T. I., Sobański, T., Franzosa, J. A., Richard, A. M., Lougee, R. R., Gissi, A., et al. (2019) · Toxicological Sciences · doi:10.1093/toxsci/kfz201 · Cited by 256 · see citing works
Self-citationCiallella, H. L., & Zhu, H. (2019) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.8b00393 · Cited by 227 · see citing works
Noyes, P. D., Friedman, K. P., Browne, P., Haselman, J. T., Gilbert, M. E., Hornung, M. W., Barone, S., Crofton, K. M., Laws, S. C., Stoker, T. E., et al. (2019) · Environmental Health Perspectives · doi:10.1289/ehp5297 · Cited by 211 · see citing works
Wu, Y., & Wang, G. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19082358 · Cited by 193 · see citing works
Han, R., Yoon, H., Kim, G., Lee, H., & Lee, Y. (2023) · Pharmaceuticals · doi:10.3390/ph16091259 · Cited by 192 · see citing works
An Overview of Machine Learning and Big Data for Drug Toxicity Evaluation
Vo, A. H., Vleet, T. R. V., Gupta, R. R., Liguori, M. J., & Rao, M. S. (2019) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.9b00227 · Cited by 191 · see citing works
An update on Drug Repurposing: Re-written saga of the drug’s fate
S, H. S. G. N., Saraswathy, G. R., Murahari, M., & Krishnamurthy, M. (2018) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2018.11.127 · Cited by 160 · see citing works
Advances in Artificial Intelligence (AI)-assisted approaches in drug screening
Singh, S., Gupta, H., Sharma, P., & Sahi, S. (2023) · Artificial Intelligence Chemistry · doi:10.1016/j.aichem.2023.100039 · Cited by 144 · see citing works
McCord, J. P., Groff, L. C., & Sobus, J. R. (2021) · Environment International · doi:10.1016/j.envint.2021.107011 · Cited by 110 · see citing works
A framework for chemical safety assessment incorporating new approach methodologies within REACH
Ball, N. S., Bars, R., Botham, P. A., Cuciureanu, A., Cronin, M., Doe, J. E., Dudzina, T., Gant, T. W., Leist, M., & van Ravenzwaay, B. (2022) · Archives of Toxicology · doi:10.1007/s00204-021-03215-9 · Cited by 108 · see citing works
Blum, J., Masjosthusmann, S., Bartmann, K., Bendt, F., Dolde, X., Dönmez, A., Förster, N., Holzer, A.-K., Hübenthal, U., Keßel, H. E., et al. (2023) · Chemosphere · doi:10.1016/j.chemosphere.2022.137035 · Cited by 105 · see citing works
Improving natural product research translation: From source to clinical trial
Sorkin, B. C., Kuszak, A. J., Bloss, G., Fukagawa, N. K., Hoffman, F. A., Jafari, M., Barrett, B. P., Brown, P. N., Bushman, F. D., Casper, S. J., et al. (2019) · The FASEB Journal · doi:10.1096/fj.201902143r · Cited by 104 · see citing works
Comparative Study of Multitask Toxicity Modeling on a Broad Chemical Space
Sosnin, S., Karlov, D., Tetko, I. V., & Fedorov, M. V. (2019) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.8b00685 · Cited by 102 · see citing works
Bajard, L., Adamovský, O., Audouze, K., Baken, K. A., Barouki, R., Beltman, J. B., Beronius, A., Bonefeld‐Jørgensen, E. C., Cano-Sancho, G., de Baat, M. L., et al. (2022) · Environmental Research · doi:10.1016/j.envres.2022.114650 · Cited by 102 · see citing works
TOXRIC: a comprehensive database of toxicological data and benchmarks
Wu, L., Yan, B., Han, J., Li, R., Xiao, J., He, S., & Bo, X. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac1074 · Cited by 102 · see citing works
Villeneuve, D. L., Coady, K. K., Escher, B. I., Mihaich, E. M., Murphy, C. A., Schlekat, T. H., & García‐Reyero, N. (2018) · Environmental Toxicology and Chemistry · doi:10.1002/etc.4315 · Cited by 100 · see citing works
Review of high-content screening applications in toxicology
Li, S., & Xia, M. (2019) · Archives of Toxicology · doi:10.1007/s00204-019-02593-5 · Cited by 93 · see citing works
Lynch, C., Sakamuru, S., Ooka, M., Huang, R., Klumpp-Thomas, C. A., Shinn, P., Gerhold, D. L., Rossoshek, A., Michael, S., Casey, W., et al. (2023) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev-pharmtox-112122-104310 · Cited by 76 · see citing works
Self-citationMolecular Mechanisms Underlying Neuroinflammation Elicited by Occupational Injuries and Toxicants
Pathak, D., & Sriram, K. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24032272 · Cited by 69 · see citing works
Deep Learning-Based Conformal Prediction of Toxicity
Zhang, J., Norinder, U., & Svensson, F. (2021) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.1c00208 · Cited by 66 · see citing works
Shafer, T. J., Brown, J. P., Lynch, B., Dávila-Montero, S., Wallace, K., & Friedman, K. P. (2019) · Toxicological Sciences · doi:10.1093/toxsci/kfz052 · Cited by 64 · see citing works
Silva, R. J., & Tamburic, S. (2022) · Cosmetics · doi:10.3390/cosmetics9050090 · Cited by 63 · see citing works
Ciallella, H. L., Russo, D. P., Aleksunes, L. M., Grimm, F. A., & Zhu, H. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c02656 · Cited by 63 · see citing works
Lowe, C. N., & Williams, A. J. (2021) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.0c01273 · Cited by 62 · see citing works
Moné, M. J., Pallocca, G., Escher, S. E., Exner, T. E., Herzler, M., Bennekou, S. H., Kamp, H., Kroese, E. D., Leist, M., Steger‐Hartmann, T., et al. (2020) · Archives of Toxicology · doi:10.1007/s00204-020-02866-4 · Cited by 62 · see citing works
Ciallella, H. L., Russo, D. P., Aleksunes, L. M., Grimm, F. A., & Zhu, H. (2020) · Laboratory Investigation · doi:10.1038/s41374-020-00477-2 · Cited by 60 · see citing works
Chemical Characterization of Recycled Consumer Products Using Suspect Screening Analysis
Lowe, C. N., Phillips, K. A., Favela, K. H., Yau, A. Y., Wambaugh, J. F., Sobus, J. R., Williams, A. J., Pfirrman, A. J., & Isaacs, K. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c01907 · Cited by 60 · see citing works
Human biomonitoring and toxicokinetics as key building blocks for next generation risk assessment
Reale, E., Jeddi, M. Z., Paini, A., Connolly, A., Duca, R. C., Cubadda, F., Benfenati, E., Bessems, J. G. M., Galea, K. S., Dirven, H. A. A. M., et al. (2024) · Environment International · doi:10.1016/j.envint.2024.108474 · Cited by 56 · see citing works
Singam, E. R. A., Tachachartvanich, P., Fourches, D., Soshilov, A. A., Hsieh, C., Merrill, M. A. L., Smith, M. T., & Durkin, K. A. (2020) · Environmental Research · doi:10.1016/j.envres.2020.109920 · Cited by 53 · see citing works
High-Throughput Screening to Predict Chemical-Assay Interference
Borrel, A., Huang, R., Sakamuru, S., Xia, M., Simeonov, A. M., Mansouri, K., Houck, K. A., Judson, R., & Kleinstreuer, N. (2020) · Scientific Reports · doi:10.1038/s41598-020-60747-3 · Cited by 52 · see citing works
Application of In Vitro Metabolism Activation in High-Throughput Screening
Ooka, M., Lynch, C., & Xia, M. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21218182 · Cited by 49 · see citing works
Crofton, K. M., & Mundy, W. R. (2021) · EFSA Supporting Publications · doi:10.2903/sp.efsa.2021.en-6924 · Cited by 47 · see citing works
Kolle, S. N., Landsiedel, R., & Natsch, A. (2020) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2020.104713 · Cited by 45 · see citing works
Kurosaki, K., Wu, R., & Uesawa, Y. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21217853 · Cited by 44 · see citing works
Ciallella, H. L., Russo, D. P., Sharma, S., Li, Y., Sloter, E. D., Sweet, L., Huang, H., & Zhu, H. (2022) · Environmental Science & Technology · doi:10.1021/acs.est.2c01040 · Cited by 44 · see citing works
Crofton, K. M., Bassan, A., Behl, M., Chushak, Y. G., Fritsche, E., Gearhart, J. M., Marty, M. S., Mumtaz, M. M., Pavan, M., Ruíz, P., et al. (2022) · Computational Toxicology · doi:10.1016/j.comtox.2022.100223 · Cited by 44 · see citing works
Luo, Y., Chen, Z., Hsieh, N., & Lin, T.-E. L. (2022) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2022.128658 · Cited by 43 · see citing works
Chen, Z. (2020) · ALTEX · doi:10.14573/altex.2002291 · Cited by 43 · see citing works
Profiling the Tox21 Chemical Collection for Acetylcholinesterase Inhibition
Li, S., Zhao, J., Huang, R., Travers, J., Klumpp-Thomas, C. A., Yu, W., MacKerell, A. D., Sakamuru, S., Ooka, M., Xue, F., et al. (2021) · Environmental Health Perspectives · doi:10.1289/ehp6993 · Cited by 43 · see citing works
Progress in data interoperability to support computational toxicology and chemical safety evaluation
Watford, S., Edwards, S. W., Angrish, M. M., Judson, R., & Friedman, K. P. (2019) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2019.114707 · Cited by 40 · see citing works
Matsuzaka, Y., & Uesawa, Y. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20194855 · Cited by 39 · see citing works
Busquet, F., Härtung, T., Pallocca, G., Rovida, C., & Leist, M. (2020) · Archives of Toxicology · doi:10.1007/s00204-020-02787-2 · Cited by 38 · see citing works
Mining of Consumer Product Ingredient and Purchasing Data to Identify Potential Chemical Coexposures
Stanfield, Z., Addington, C. K., Dionisio, K. L., Lyons, D., Tornero‐Velez, R., Phillips, K. A., Buckley, T. J., & Isaacs, K. (2021) · Environmental Health Perspectives · doi:10.1289/ehp8610 · Cited by 37 · see citing works
The chemical landscape of high-throughput new approach methodologies for exposure
Isaacs, K., Egeghy, P. P., Dionisio, K. L., Phillips, K. A., Zidek, A., Ring, C., Sobus, J. R., Ulrich, E. M., Wetmore, B. A., Williams, A. J., et al. (2022) · Journal of Exposure Science & Environmental Epidemiology · doi:10.1038/s41370-022-00496-9 · Cited by 37 · see citing works
Deep Learning Model for Identifying Critical Structural Motifs in Potential Endocrine Disruptors
Mukherjee, A., Su, A., & Rajan, K. (2021) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.0c01409 · Cited by 36 · see citing works
Tackling assay interference associated with small molecules
Tan, L., Hirte, S., Palmacci, V., Stork, C., & Kirchmair, J. (2024) · Nature Reviews Chemistry · doi:10.1038/s41570-024-00593-3 · Cited by 35 · see citing works
Onyango, D. O., Selman, B., Rose, J. L., Ellison, C. A., & Nash, J. F. (2023) · Toxicological Sciences · doi:10.1093/toxsci/kfad082 · Cited by 34 · see citing works
Proteomics technologies in toxicity screening: a review
Jin, Y., Sun, Z., Gu, A. Z., & Zhou, X. (2025) · Environmental Chemistry Letters · doi:10.1007/s10311-024-01816-1 · Cited by 34 · see citing works
High-Throughput Chemical Screening and Structure-Based Models to Predict hERG Inhibition
Krishna, S., Borrel, A., Huang, R., Zhao, J., Xia, M., & Kleinstreuer, N. (2022) · Biology · doi:10.3390/biology11020209 · Cited by 33 · see citing works
A call for a Human Exposome Project
Härtung, T. (2023) · ALTEX · doi:10.14573/altex.2301061 · Cited by 33 · see citing works
Clerbaux, L., Paini, A., Lumen, A., Osman‐Ponchet, H., Worth, A. P., & Fardel, O. (2019) · Environment International · doi:10.1016/j.envint.2019.03.003 · Cited by 33 · see citing works
MolData, a molecular benchmark for disease and target based machine learning
Arshadi, A. K., Salem, M., Firouzbakht, A., & Yuan, J. S. (2022) · Journal of Cheminformatics · doi:10.1186/s13321-022-00590-y · Cited by 32 · see citing works
Optimizing Chemicals Management in the United States and Canada through the Essential-Use Approach
Bălan, S. A., Andrews, D. Q., Blum, A., Diamond, M. L., Fernández, S. R., Harriman, E., Lindstrom, A. B., Reade, A., Richter, L., Sutton, R., et al. (2023) · Environmental Science & Technology · doi:10.1021/acs.est.2c05932 · Cited by 32 · see citing works
Tkalec, Ž., Antignac, J., Bandow, N., Béen, F. M., Belova, L., Bessems, J. G. M., Bizec, B. L., Brack, W., Cano-Sancho, G., Chaker, J., et al. (2024) · Environment International · doi:10.1016/j.envint.2024.108585 · Cited by 31 · see citing works
Tang, W., Chen, J., & Hong, H. (2020) · Chemosphere · doi:10.1016/j.chemosphere.2020.126768 · Cited by 31 · see citing works
Zheng, Y., Ma, Y., Xiong, Q., Zhu, K., Weng, N., & Zhu, Q. X. (2024) · Pharmacological Research · doi:10.1016/j.phrs.2024.107381 · Cited by 30 · see citing works
Pronschinske, M. A., Corsi, S. R., DeCicco, L., Furlong, E. T., Ankley, G. T., Blackwell, B. R., Villeneuve, D. L., Lenaker, P. L., & Nott, M. A. (2022) · Environmental Toxicology and Chemistry · doi:10.1002/etc.5403 · Cited by 29 · see citing works
Systems modeling of developmental vascular toxicity
Saili, K. S., Franzosa, J. A., Baker, N., Ellis‐Hutchings, R. G., Settivari, R. S., Carney, E. W., Spencer, R. M., Zurlinden, T. J., Kleinstreuer, N., Li, S., et al. (2019) · Current Opinion in Toxicology · doi:10.1016/j.cotox.2019.04.004 · Cited by 27 · see citing works
Saavedra, L., Wallace, K., Freudenrich, T. M., Mall, M., Mundy, W. R., Davila, J., Shafer, T. J., Wernig, M., & Haag, D. (2021) · Toxicological Sciences · doi:10.1093/toxsci/kfab008 · Cited by 26 · see citing works
Selecting a minimal set of androgen receptor assays for screening chemicals
Judson, R., Houck, K. A., Friedman, K. P., Brown, J., Browne, P., Johnston, P. A., Close, D. A., Mansouri, K., & Kleinstreuer, N. (2020) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2020.104764 · Cited by 25 · see citing works
Acetylcholinesterase Inhibition Assays for High-Throughput Screening
Li, S., Li, A. J., Zhao, J., Santillo, M. F., & Xia, M. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2213-1_6 · Cited by 25 · see citing works
Computational Study of Drugs Targeting Nuclear Receptors
Kenda, M., & Dolenc, M. S. (2020) · Molecules · doi:10.3390/molecules25071616 · Cited by 23 · see citing works
Haggard, D. E., Setzer, R. W., Judson, R., & Friedman, K. P. (2019) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2019.104510 · Cited by 23 · see citing works
Hendriks, G., Adriaens, E., Allemang, A., Clements, J., Cole, G., Derr, R. S., Engel, M. E., Hamel, A., Kidd, D., Kellum, S., et al. (2024) · Environmental and Molecular Mutagenesis · doi:10.1002/em.22592 · Cited by 22 · see citing works
Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity
Sostare, E., Lawson, T. N., Saunders, L. R., Colbourne, J. K., Weber, R. J. M., Sobański, T., & Viant, M. R. (2022) · Toxicological Sciences · doi:10.1093/toxsci/kfac007 · Cited by 22 · see citing works
Loken, L. C., Corsi, S. R., Alvarez, D. A., Ankley, G. T., Baldwin, A. K., Blackwell, B. R., DeCicco, L., Nott, M. A., Oliver, S. K., & Villeneuve, D. L. (2022) · Environmental Toxicology and Chemistry · doi:10.1002/etc.5491 · Cited by 22 · see citing works
Experimental Exposure Assessment of Ionizable Organic Chemicals in In Vitro Cell-Based Bioassays
Huchthausen, J., Mühlenbrink, M., König, M., Escher, B. I., & Henneberger, L. (2020) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.0c00067 · Cited by 21 · see citing works
Carnesecchi, E., Langezaal, I., Browne, P., Leite, S. B., Campia, I., Coecke, S., Dagallier, B., Deceuninck, P., Dorne, J. L. C., Tarazona, J. V., et al. (2023) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2023.105426 · Cited by 20 · see citing works
Mi, K., Wu, X., & Lin, Z. (2025) · Environment International · doi:10.1016/j.envint.2025.109339 · Cited by 20 · see citing works
Multi-dimensional in vitro bioactivity profiling for grouping of glycol ethers
Grimm, F. A., House, J. S., Wilson, M. R., Sirenko, O., Iwata, Y., Wright, F. A., Ball, N. S., & Rusyn, I. (2018) · Regulatory Toxicology and Pharmacology · doi:10.1016/j.yrtph.2018.11.011 · Cited by 20 · see citing works
InterPred: a webtool to predict chemical autofluorescence and luminescence interference
Borrel, A., Mansouri, K., Nolte, S., Saddler, T. O., Conway, M., Schmitt, C., & Kleinstreuer, N. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa378 · Cited by 20 · see citing works
Nossier, E. S., Anwar, M. M., & El‐Zahabi, M. A. (2025) · Molecular Diversity · doi:10.1007/s11030-025-11248-w · Cited by 19 · see citing works
Cell Painting for cytotoxicity and mode-of-action analysis in primary human hepatocytes
Ewald, J., Titterton, K., Bäuerle, A., Beatson, A., Boiko, D. A., Cabrera, Á. A., Cheah, J. H., Cimini, B. A., Gorissen, B. L., Harrill, J., et al. (2026) · Cell Systems · doi:10.1016/j.cels.2026.101566 · Cited by 19 · see citing works
Pavel, A., Saarimäki, L. A., Möbus, L., Federico, A., Serra, A., & Greco, D. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.08.061 · Cited by 19 · see citing works
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Richard, A. M., Tao, D., LeClair, C. A., Leister, W., Tretyakov, K. V., White, E., Lewis, K. C., Sefler, A. M., Shinn, P., Collins, B. J., et al. (2024) · Chemical Research in Toxicology · doi:10.1021/acs.chemrestox.4c00330 · Cited by 18 · see citing works
Self-citationProfhEX: AI-based platform for small molecules liability profiling
Lunghini, F., Fava, A., Pisapia, V., Sacco, F. M., Iaconis, D., & Beccari, A. R. (2023) · Journal of Cheminformatics · doi:10.1186/s13321-023-00728-6 · Cited by 17 · see citing works
Promoting validation and cross-phylogenetic integration in model organism research
Cheng, K. C., Burdine, R. D., Dickinson, M. E., Ekker, S. C., Lin, A. Y., Lloyd, K. C. K., Lutz, C. M., MacRae, C. A., Morrison, J. H., O’Connor, D. H., et al. (2022) · Disease Models & Mechanisms · doi:10.1242/dmm.049600 · Cited by 16 · see citing works
Arcega, R. D., Chen, R.-J., Chih, P., Huang, Y.-H., Chang, W., Kong, T.-K., Lee, C.-C., Mahmudiono, T., Tsui, C.-C., Hou, W.-C., et al. (2022) · Journal of Environmental Management · doi:10.1016/j.jenvman.2022.116982 · Cited by 16 · see citing works
Daood, N. J., Russo, D. P., Chung, E., Qin, X., & Zhu, H. (2024) · Environment & Health · doi:10.1021/envhealth.4c00026 · Cited by 16 · see citing works
Lauterstein, D., Savidge, M., Chen, Y., Weil, R. E., & Yeager, R. P. (2019) · Toxicology in Vitro · doi:10.1016/j.tiv.2019.104684 · Cited by 16 · see citing works
The exposome and nutritional pharmacology and toxicology: a new application for metabolomics
Rushing, B. R., Thessen, A., Soliman, G. A., Ramesh, A., & Sumner, S. (2023) · Exposome · doi:10.1093/exposome/osad008 · Cited by 15 · see citing works
Liu, S., Liu, K., Zheng, N., Ma, X., Yao, W., Liu, X., Yao, Z., & Zhang, H. (2025) · Environmental Research · doi:10.1016/j.envres.2025.122336 · Cited by 14 · see citing works
Predicting the safety of medicines in pregnancy: A workshop report
Clements, J. M., Hawkes, R. G., Jones, D. E., Adjei, A., Chambers, T. J. G., Simon, L., Stemplewski, H. E., Berry, N. J., Price, S., Pirmohamed, M., et al. (2020) · Reproductive Toxicology · doi:10.1016/j.reprotox.2020.02.011 · Cited by 14 · see citing works
Liu, Y., Lim, H., & Xie, L. (2022) · BMC Bioinformatics · doi:10.1186/s12859-022-04681-3 · Cited by 14 · see citing works
Advances in computational methods along the exposure to toxicological response paradigm
El-Masri, H. A., Friedman, K. P., Isaacs, K., & Wetmore, B. A. (2022) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2022.116141 · Cited by 14 · see citing works
Sellami, A., Réau, M. F., Montès, M., & Lagarde, N. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.986016 · Cited by 14 · see citing works
Kenda, M., Vegelj, J., Herlah, B., Perdih, A., Mladěnka, P., & Dolenc, M. S. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22136927 · Cited by 13 · see citing works
Klaren, W. D., & Rusyn, I. (2018) · Assay and Drug Development Technologies · doi:10.1089/adt.2018.860 · Cited by 13 · see citing works
Ecotoxicity Databases for QSAR Modeling
Ghosh, S., Kar, S., & Leszczyński, J. (2020) · Methods in pharmacology and toxicology · doi:10.1007/978-1-0716-0150-1_29 · Cited by 13 · see citing works
Rivetti, C., Houghton, J., Rubio, M. B., Basili, D., Kukić, P., Müller, I. I., Hodges, G., & Campos, B. (2025) · NAM journal. · doi:10.1016/j.namjnl.2025.100028 · Cited by 12 · see citing works
Nicolas, C. I., Linakis, M. W., Minto, M. S., Mansouri, K., Clewell, R. A., Yoon, M., Wambaugh, J. F., Patlewicz, G. Y., McMullen, P. D., Andersen, M. E., et al. (2022) · Frontiers in Pharmacology · doi:10.3389/fphar.2022.980747 · Cited by 12 · see citing works
Mode of action approach supports a lack of carcinogenic potential of six organic UV filters
Cohen, S., Boobis, A. R., Jacobson-Kram, D., Schoeny, R., Rosol, T., Williams, G. M., Kaminski, N. E., Eichenbaum, G., Guengerich, F., & Nash, J. F. (2025) · Critical Reviews in Toxicology · doi:10.1080/10408444.2025.2462642 · Cited by 12 · see citing works
Patlewicz, G. Y. (2020) · Frontiers in Toxicology · doi:10.3389/ftox.2020.00002 · Cited by 11 · see citing works
Yang, R., Liu, S., Yin, N., Zhang, Y., & Faiola, F. (2022) · Environmental Science & Technology · doi:10.1021/acs.est.2c04467 · Cited by 11 · see citing works
- Authors
- Thomas, R.
- Affiliations
- Environmental Protection Agency (US)
- Corresponding author
- Thomas, Russell
- ORCID
- Thomas, Russell
- Venue
- ALTEX
- Publisher
- ALTEX Edition
- Published
- 2018
- Volume
- 35
- Issue
- 2
- Pages
- 163-168
- ISSN
- 0946-7785 (ISSN-L)
- 1868-596X
- PMC
- PMC6664816
- OpenAlex
- W2790282224
- Cited by
- 229
- References
- 29
- Citations by year
- 2026: 30 · 2025: 29 · 2024: 27 · 2023: 29 · 2022: 36 · 2021: 16 · 2020: 28 · 2019: 27 · 2018: 7
- FWCI
- 28.63
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- ALTEX (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- Topics
- Health Sciences › Veterinary › Small Animals › Animal testing and alternatives
- Life Sciences › Immunology and Microbiology › Immunology › Immunotoxicology and immune responses
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- Tox21, high-throughput screening, in vitro toxicity testing, alternative test methods, hazard identification, chemical safety assessment, regulatory toxicology, pharmacokinetics, data curation, pharmaceuticals, data-poor chemicals
- MeSH terms
- Animals, Animal Testing Alternatives, Cooperative Behavior, Humans, Leadership, Pharmacokinetics, United States, United States Environmental Protection Agency, United States Food and Drug Administration, Toxicity Tests, High-Throughput Screening Assays, In Vitro Techniques
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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