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The human microbiome and bile acid metabolism: dysbiosis, dysmetabolism, disease and intervention
Abstract
INTRODUCTION: Recent evidence indicates that the human gut microbiome plays a significant role in health and disease. Dysbiosis, defined as a pathological imbalance in a microbial community, is becoming increasingly appreciated as a 'central environmental factor' that is both associated with complex phenotypes and affected by host genetics, diet and antibiotic use. More recently, a link has been established between the dysmetabolism of bile acids (BAs) in the gut to dysbiosis. AREAS COVERED: BAs, which are transformed by the gut microbiota, have been shown to regulate intestinal homeostasis and are recognized as signaling molecules in a wide range of metabolic processes. This review will examine the connection between BA metabolism as it relates to the gut microbiome and its implication in health and disease. EXPERT OPINION: A disrupted gut microbiome, including a reduction of bile salt hydrolase (BSH)-active bacteria, can significantly impair the metabolism of BAs and may result in an inability to maintain glucose homeostasis as well as normal cholesterol breakdown and excretion. To better understand the link between dysbiosis, BA dysmetabolism and chronic degenerative disease, large-scale metagenomic sequencing studies, metatranscriptomics, metaproteomics and metabolomics should continue to catalog functional diversity in the gastrointestinal tract of both healthy and diseased populations. Further, BSH-active probiotics should continue to be explored as treatment options to help restore metabolic levels.
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“Chenodeoxycholic acid (CDCA) is the major activator of FXR, followed by deoxycholic acid (DCA), colic acid (LCA), and cholic acid (CA) (Jones et al., 2014).”
From Bacteroides dorei BDX-01 alleviates DSS-induced experimental colitis in mice by regulating intestinal bile salt hydrolase activity and the FXR-NLRP3 signaling pathway (2023) · cites this paper as Jones et al., 2014
Citations
Cites
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785
Enterotypes of the human gut microbiome
MetaHIT Consortium (additional members), Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., et al. (2011) · Nature · doi:10.1038/nature09944 · Cited by 7,548
A metagenome-wide association study of gut microbiota in type 2 diabetes
Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513
Turnbaugh, P. J., Ley, R. E., Hamady, M., Fraser-Liggett, C. M., Knight, R., & Gordon, J. I. (2007) · Nature · doi:10.1038/nature06244 · Cited by 6,091
Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., et al. (2011) · Nature · doi:10.1038/nature09922 · Cited by 5,597
Host-Bacterial Mutualism in the Human Intestine
Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., & Gordon, J. I. (2005) · Science · doi:10.1126/science.1104816 · Cited by 5,277
Prokaryotes: The unseen majority
Whitman, W. B., Coleman, D. C., & Wiebe, W. J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.12.6578 · Cited by 4,871 · cited 1×
“All surfaces of the human body that are exposed to the environment are colonized, including skin, respiratory system, urogenital tract and gastrointestinal (GI) tract, totaling at least 100 trillion microbial cells [6].”
Background
Research works printed but not linked: 7
- Lederberg J, 2001, Scientist, 15, 8
- Hofmann AF, 1990, Hepatology, 12, S17
- Hofmann A, 1989, GI diseases and pathology, diagnostics and management, 144
- Fiorucci S, 2010, Curr Mol Med, 10, 579
- Charach G, 1998, J Med, 29, 125
- Dukowicz AC, 2007, Gastroenterol Hepatol (N Y), 3, 112
- Anukam KC, 2009, Adv Urol, 680363
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Bile acid signaling in metabolic disease and drug therapy
Li, T., & Chiang, J. Y. L. (2014) · Pharmacological Reviews · doi:10.1124/pr.113.008201 · Cited by 935
“Dysbiosis is the major environmental factor that affects bile acid metabolism and contributes to diseases not only in the gastrointestinal system but also in chronic diseases, such as NAFLD, diabetes, and obesity (Jones et al., 2014).”
BackgroundIntestinal transport and metabolism of bile acids
Dawson, P. A., & Karpen, S. J. (2015) · Journal of Lipid Research · doi:10.1194/jlr.r054114 · Cited by 598
The Human Microbiome and Obesity: Moving beyond Associations
Maruvada, P., Leone, V., Kaplan, L. M., & Chang, E. B. (2017) · Cell Host & Microbe · doi:10.1016/j.chom.2017.10.005 · Cited by 476
Molecular cartography of the human skin surface in 3D
Bouslimani, A., Porto, C., Rath, C. M. B., Wang, M., Guo, Y., González, A., Berg-Lyons, D., Ackermann, G. L., Christensen, G. J. M., Nakatsuji, T., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1424409112 · Cited by 365
“Cholic acids, commonly described as bile acids, are important players of the lipid metabolism in the gut and help maintain a healthy gut microbial community, thus representing a viable therapeutic intervention against pathogens (29).”
BackgroundReijnders, D., Goossens, G. H., Hermes, G. D. A., Neis, E. P. J. G., van der Beek, C. M., Most, J., Holst, J. J., Lenaerts, K., Kootte, R. S., Nieuwdorp, M., et al. (2016) · Cell Metabolism · doi:10.1016/j.cmet.2016.06.016 · Cited by 356
“Although BAs and SCFAs may control incretin release (Brighton et al., 2015; Canfora et al., 2015) and affect energy metabolism in rodents (Gao et al., 2009), no effects on postprandial energy and substrate metabolism and fasting and postprandial glucagon-like peptide 1 (GLP-1) concentrations were found in the present…”
BackgroundResultInfluentialThe gut microbiota and gastrointestinal surgery
Guyton, K. L., & Alverdy, J. C. (2016) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2016.139 · Cited by 230
Duttaroy, A. K. (2021) · Nutrients · doi:10.3390/nu13010144 · Cited by 239
“Recently, the bidirectional relationship between gut microbiota and bile acid metabolism [87] in CVD has been reviewed [48].”
BackgroundThe Role of Gut Microbiota in Atherosclerosis and Hypertension
Ma, J., & Li, H. (2018) · Frontiers in Pharmacology · doi:10.3389/fphar.2018.01082 · Cited by 234
Sarafian, M. H., Lewis, M. R., Pechlivanis, A., Ralphs, S., McPhail, M. J. W., Patel, V., Dumas, M., Holmes, E. C., & Nicholson, J. K. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b01556 · Cited by 217
Bridging the Gap between Gut Microbial Dysbiosis and Cardiovascular Diseases
Lau, K., Srivatsav, V., Rizwan, A., Nashed, A., Liu, R., Shen, R. D., & Akhtar, M. (2017) · Nutrients · doi:10.3390/nu9080859 · Cited by 223
“Primary BAs are synthesized from cholesterol in the liver, and are excreted into the small intestine to aid lipid emulsification [54].”
BackgroundInfluentialThe gastrointestinal microbiota and colorectal cancer
Keku, T. O., Dulal, S., Deveaux, A. E., Jovov, B., & Han, X. (2014) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00360.2012 · Cited by 207
“The intestinal bacteria are essential in digestion and absorption of indigestible carbohydrates (fibers), production of vitamins B and K, metabolism of endogenous and exogenous compounds, immune potentiation, are actively involved in innate and cell-mediated immunity, help to maintain intestinal barrier function, and…”
BackgroundJoyce, S. A., Kamil, A., Fleige, L. E., & Gahan, C. G. M. (2019) · Frontiers in Nutrition · doi:10.3389/fnut.2019.00171 · Cited by 210
Ma, S., Tong, Q., Lin, Y., Pan, L., Fu, J., Peng, R., Zhang, X., Zhao, Z., Li, Y., Yu, J., et al. (2022) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-022-01027-6 · Cited by 197
Palau‐Rodriguez, M., Tulipani, S., Queipo‐Ortuño, M. I., Urpí-Sardà, M., Tinahones, F. J., & Andrés‐Lacueva, C. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01151 · Cited by 163
“Furthermore, according to Jones et al. (2014) Actinobacteria and Firmicutes clones would be the only ones able to degrade all conjugated BA, with Bacteroidetes species being limited to tauro- conjugation activities.”
BackgroundMetabolomic Profiling of Bile Acids in Clinical and Experimental Samples of Alzheimer’s Disease
Pan, X., Elliott, C. T., McGuinness, B., Passmore, P., Kehoe, P. G., Hölscher, C., McClean, P. L., Graham, S. F., & Green, B. D. (2017) · Metabolites · doi:10.3390/metabo7020028 · Cited by 153
“Conditions such as dysbiosis (pathological imbalance in a microbial community) can significantly impair the metabolism of bile acids and may result in an inability to maintain glucose homeostasis as well as normal cholesterol breakdown and excretion [27].”
BackgroundEffects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans
Basolo, A., Hohenadel, M. G., Ang, Q. Y., Piaggi, P., Heinitz, S., Walter, M. F., Walter, P. J., Parrington, S., Trinidad, D., von Schwartzenberg, R. J., et al. (2020) · Nature Medicine · doi:10.1038/s41591-020-0801-z · Cited by 147
Gadaleta, R. M., García‐Irigoyen, O., Cariello, M., Scialpi, N., Peres, C., Vetrano, S., Fiorino, G., Danese, S., Ko, B., Luo, J., et al. (2020) · EBioMedicine · doi:10.1016/j.ebiom.2020.102719 · Cited by 126
Torres, J., Palmela, C., Brito, H., Bao, X., Ruiqi, H., Moura-Santos, P., da Silva, J. P., Oliveira, A. A. S., Vieira, C. L., Pérez, K., et al. (2017) · United European Gastroenterology Journal · doi:10.1177/2050640617708953 · Cited by 121
Alphonse, P. A. S., & Jones, P. J. H. (2015) · Lipids · doi:10.1007/s11745-015-4096-7 · Cited by 124
“Alters absorption and synthesis [110, 111, 211]”
BackgroundThe Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar)
Minniti, G., Hagen, L. H., Porcellato, D., Jørgensen, S. M., Pope, P. B., & Vaaje‐Kolstad, G. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02043 · Cited by 114
“These practices could potentially affect the balance of the fish-skin microbiome and reduce the bacterial biodiversity, promoting proliferation of opportunistic bacteria, a process well documented in mammals (Myers, 2004; Jones et al., 2014; Tomasello et al., 2016).”
BackgroundProbiotics ameliorate intestinal pathophysiology in a mouse model of Alzheimer’s disease
Kaur, H., Nagamoto‐Combs, K., Golovko, S. A., Golovko, M. Y., Klug, M. G., & Combs, C. K. (2020) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2020.04.009 · Cited by 115
“Gut microbiota composition can modify the bile acid profile through a broad range of reactions including conjugation and deconjugation resulting in formation of secondary bile acids (Duboc et al., 2013; Jones et al., 2014; Musso et al., 2011; Ridlon et al., 2014; Theriot et al., 2014).”
BackgroundThe Biofilm Community: Rebels with a Cause
Aruni, W., Dou, Y., Mishra, A., & Fletcher, H. M. (2015) · Current Oral Health Reports · doi:10.1007/s40496-014-0044-5 · Cited by 108
Factors Determining Colorectal Cancer: The Role of the Intestinal Microbiota
Nistal, E., Fernández-Fernández, N., Vivas, S., & Olcoz, J. L. (2015) · Frontiers in Oncology · doi:10.3389/fonc.2015.00220 · Cited by 111
Chemoproteomic Profiling of Bile Acid Interacting Proteins
Zhuang, S., Li, Q., Cai, L., Wang, C., & Lei, X. (2017) · ACS Central Science · doi:10.1021/acscentsci.7b00134 · Cited by 106
Determining Microbial Products and Identifying Molecular Targets in the Human Microbiome
Cordy, R. J., Yasuda, K., Shafquat, A., Morgan, X. C., & Huttenhower, C. (2014) · Cell Metabolism · doi:10.1016/j.cmet.2014.10.003 · Cited by 102
“Microbial alteration of bile acids plays a key role in the digestion and absorption of lipids, as well as in glucose homeostasis (Jones et al., 2014).”
BackgroundYuan, B., Zhu, Q., Guo, N., Zheng, S.-J., Wang, Y., Wang, J., Xu, J., Liu, S., He, K. F., Hu, T., et al. (2018) · Analytical Chemistry · doi:10.1021/acs.analchem.7b05355 · Cited by 98
Microbiome-mediated bile acid modification: Role in intestinal drug absorption and metabolism
Enright, E. F., Griffin, B. T., Gahan, C. G. M., & Joyce, S. A. (2018) · Pharmacological Research · doi:10.1016/j.phrs.2018.04.009 · Cited by 91
Functional proteomics within the genus Lactobacillus
Angelis, M. D., Calasso, M. P., Cavallo, N., Cagno, R. D., & Gobbetti, M. (2016) · PROTEOMICS · doi:10.1002/pmic.201500117 · Cited by 86
“Recently, metaproteomics approaches were also proposed to determine the microbial effects on the human health and disease state [79,80,83].”
BackgroundDetection technologies and metabolic profiling of bile acids: a comprehensive review
Liu, Y., Rong, Z., Xiang, D., Zhang, C., & Liu, D. (2018) · Lipids in Health and Disease · doi:10.1186/s12944-018-0774-9 · Cited by 78
“In turn, liver and intestinal diseases are often accompanied by systemic cycling disorders of BAs [3, 4], so their characteristics in blood and tissues can indirectly indicate disease states.”
Davoren, M. J., Liu, J., Castellanos, J. A., Rodriguez-Malave, N. I., & Schiestl, R. H. (2018) · Gut Microbes · doi:10.1080/19490976.2018.1547612 · Cited by 77
Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
Fukuyama, J., Rumker, L., Sankaran, K., Jeganathan, P., Dethlefsen, L., Relman, D. A., & Holmes, S. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005706 · Cited by 74
“The provisioning of these and many other compounds are recognized as ecosystem services of the gut microbiota, with health effects both locally in the gut and systemically throughout the host [87, 88].”
BackgroundInterplay Between the Host, the Human Microbiome, and Drug Metabolism
Nichols, R. G., Peters, J. M., & Patterson, A. D. (2019) · Human Genomics · doi:10.1186/s40246-019-0211-9 · Cited by 75
Parenteral Nutrition-Associated Liver Disease: The Role of the Gut Microbiota
Cahová, M., Brátová, M., & Wohl, P. (2017) · Nutrients · doi:10.3390/nu9090987 · Cited by 74
“However, FXR and TGR5 have different affinities to individual BAs, as FXR is activated by CDCA > DCA > LCA >> CA and TGR5 is activated by LCA > DCA > CDCA > CA [78].”
BackgroundLiu, Z., Liu, W., Ran, C., Hu, J., & Zhou, Z. (2016) · Scientific Reports · doi:10.1038/srep23214 · Cited by 70
“Recent research has proven that gut microbes also modulate bile acid synthesis through depression of the nuclear receptor farnesoid X (FXR) pathway 35 , which negatively regulates bile acid synthesis 36 in the ileum and liver.”
Bile Salt Hydrolase-Competent Probiotics in the Management of IBD: Unlocking the “Bile Acid Code”
Gadaleta, R. M., Cariello, M., Crudele, L., & Moschetta, A. (2022) · Nutrients · doi:10.3390/nu14153212 · Cited by 67
Gut Microbiota Modulation as a Novel Therapeutic Strategy in Cardiometabolic Diseases
Mutalub, Y. B., Abdulwahab, M., Mohammed, A., Yahkub, A. M., Al-Mhanna, S. B., Yusof, W., Tang, S. P., Rasool, A. H. G., & Mokhtar, S. S. (2022) · Foods · doi:10.3390/foods11172575 · Cited by 64
Bacterial bile salt hydrolase: an intestinal microbiome target for enhanced animal health
Geng, W., & Lin, J. (2016) · Animal Health Research Reviews · doi:10.1017/s1466252316000153 · Cited by 61
“…host, intestinal BSH plays an important role in host metabolism and energy harvest; BSH activity has significant impacts on host physiology by disturbing conjugated bile acid-mediated fat metabolism and endocrine functions (Begley et al., 2006; Patel et al., 2010; Jones et al., 2014; Joyce et al.,”
BackgroundBile signalling promotes chronic respiratory infections and antibiotic tolerance
Reen, F. J., Flynn, S., Woods, D. F., Dunphy, N., Chróinín, M. N., Mullane, D., Stick, S. M., Adams, C., & O’Gara, F. (2016) · Scientific Reports · doi:10.1038/srep29768 · Cited by 57
“6) is consistent with the emergence of bile acids as mediators of a broad range of human diseases 51 .”
Yang, Y., & Wu, C. (2022) · Food & Function · doi:10.1039/d2fo01252a · Cited by 57
Zhang, Y., Xie, Q., You, L., Cheung, P. C. K., & Zhao, Z. (2021) · eFood · doi:10.2991/efood.k.210310.001 · Cited by 56
Spatz, M., Ciocan, D. M., Merlen, G., Rainteau, D. P., Humbert, L., Gomes-Rochette, N. F., Hugot, C., Trainel, N., Mercier‐Nomé, F., Domenichini, S., et al. (2021) · JHEP Reports · doi:10.1016/j.jhepr.2021.100230 · Cited by 57
Temperature modulation alters the gut and skin microbial profiles of chum salmon (Oncorhynchus keta)
Ghosh, S. K., Wong, M. K., Hyodo, S., Goto, S., & Hamasaki, K. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.1027621 · Cited by 52
Sagar, N., Duboc, H., Kay, G. L., Alam, M. T., Wicaksono, A. N., Covington, J. A., Quince, C., Kokkorou, M., Svolos, V., Palmieri, L., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-77374-7 · Cited by 56
The immunity–diet–microbiota axis in the development of metabolic syndrome
Brandsma, E. T., Houben, T., Fu, J., Shiri‐Sverdlov, R., & Hofker, M. H. (2015) · Current Opinion in Lipidology · doi:10.1097/mol.0000000000000154 · Cited by 48
“In addition, the microbiota affect the composition of the bile acid pool by 7-a/7-b dehydroxylation, desulfation and dehydrogenation, leading to the formation of secondary bile acids, such as deoxycholic acid, lithocholic acid, and tauro-beta-muricholic acid [43].”
Dilworth, L., Riley, C. K., & Stennett, D. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-802104-0.00005-6 · Cited by 56
Zhang, Y., Yang, L., Zhao, N., Hong, Z., Cai, B., Le, Q., Yang, T., Shi, L., & He, J. (2021) · Marine Drugs · doi:10.3390/md19120699 · Cited by 50
“Since a lower F/B ratio was observed in lean i dividuals when compared to their obese counterparts in mice and humans [16], our data indicated the beneficial effect of LJP with respect to obesity.”
MethodResultInfluentialBerbée, J. F. P., Mol, I. M., Milne, G. L., Pollock, E. D., Hoeke, G., Lütjohann, D., Monaco, C. G., Rensen, P. C. N., der Ploeg, L. H. T. V., & Shchepinov, M. S. (2017) · Atherosclerosis · doi:10.1016/j.atherosclerosis.2017.06.916 · Cited by 49
“Potential mechanism(s) may include modulation of the gut microbiome and/or bile acid metabolism in the gut [35,36], and modulation of (local) immune cells [37,38].”
Krbcová, M., Budínská, E., Kuzma, M., Pelantová, H., Hradecký, J., Heczková, M., Ďásková, N., Brátová, M., Módos, I., Videnska, P., et al. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2021.783302 · Cited by 50
Deng, J., Zou, X., Liang, Y., Zhong, J., Zhou, K., Zhang, J., Zhang, M., Wang, Z., Sun, Y., & Li, M. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.12.160 · Cited by 49
Lian, W., Wang, F., Chen, Y., Tsai, M., Chao, H., Jahr, H., Wu, R., & Ko, J. (2022) · Biomedicines · doi:10.3390/biomedicines10040860 · Cited by 46
Hasuike, Y., Endo, T., Koroyasu, M., Matsui, M., Mori, C., Yamadera, M., Fujimura, H., & Sakoda, S. (2019) · Medical Hypotheses · doi:10.1016/j.mehy.2019.109436 · Cited by 42
Wei, J., Qing, Y., Zhou, H., Liu, J., Qi, C., & Gao, J. (2021) · Journal of Endocrinological Investigation · doi:10.1007/s40618-021-01595-4 · Cited by 42
Perez, S. J. L. P., Fu, C., & Li, W. (2021) · Molecules · doi:10.3390/molecules26185673 · Cited by 39
de Almada, C. N., Almada-Érix, C. N., Roquetto, A. R., Santos-Junior, V. A., Cabral, L., Noronha, M. F., Gonçalves, A. E. S. S., dos Santos, P., Santos, A., Martínez, J., et al. (2021) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2021.1906211 · Cited by 38
“…for these results would be that the inactivation in alkaline conditions promoted changes in binding sites of specific cell components preventing their bind to cholesterol or action on the conjugated bile salts that were less excreted in the faeces than in the other groups (Jones et al. 2014).”
BackgroundVascular Cognitive Impairment and the Gut Microbiota
Li, S., Shao, Y., Li, K., HuangFu, C., Wang, W., Liu, Z., Cai, Z., & Zhao, B. (2018) · Journal of Alzheimer s Disease · doi:10.3233/jad-171103 · Cited by 40
“It has been suggested that bacterial bile salt hydrolase (BSH) regulates host lipid and cholesterol metabolisms [33, 34].”
Recent review on selected xenobiotics and their impacts on gut microbiome and metabolome
Jin, Y., Chi, J., LoMonaco, K., Boon, A., & Gu, H. (2023) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2023.117155 · Cited by 36
Zhang, C., Sheng, J., Xie, W., Luo, X., Xue, Y., Xu, G., & Chen, C. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.615895 · Cited by 42
Deng, D., Chen, P., Wu, Z., Sun, Y., Liu, C., Xiang, H., Yin, P., & Shang, D. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.725341 · Cited by 37
“Since the gut microbiota is believed to be closely connected to osteoporosis, the dysregulation of the gut flora may alter BA levels consequently (Jones et al., 2014; Devlin and Fischbach, 2015;Wahlström et al., 2016).”
BackgroundSun, X., Chen, Z., Yu, L., Zeng, W., Sun, B., Fan, H., & Bai, Y. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1205323 · Cited by 33
“Chenodeoxycholic acid (CDCA) is the major activator of FXR, followed by deoxycholic acid (DCA), colic acid (LCA), and cholic acid (CA) (Jones et al., 2014).”
BackgroundSymbiosis, dysbiosis, and rebiosis—The value of metaproteomics in human microbiome monitoring
Mao, L., & Franke, J. (2014) · PROTEOMICS · doi:10.1002/pmic.201400329 · Cited by 33
“Here, “dysbiosis” is defined as a pathological imbalance in a microbial ecological niche [78], leading to a skewed overall metabolic signature, as well as low system resilience.”
BackgroundJiang, J., Feng, N., Zhang, C., Liu, F., Zhao, J., Zhang, H., Zhai, Q., & Chen, W. (2019) · FEMS Microbiology Letters · doi:10.1093/femsle/fnz254 · Cited by 33
Advances in Gut Microbiome Research, Opening New Strategies to Cope with a Western Lifestyle
Rodríguez-Castaño, G. P., Caro‐Quintero, A., Reyes, A., & Lizcano, F. (2017) · Frontiers in Genetics · doi:10.3389/fgene.2016.00224 · Cited by 36
Plant constituents: carbohydrates, oils, resins, balsams, and plant hormones
Dilworth, L., Riley, C. K., & Stennett, D. (2023) · Elsevier eBooks · doi:10.1016/b978-0-443-18657-8.00021-9 · Cited by 33
Paroxetine Administration Affects Microbiota and Bile Acid Levels in Mice
Dethloff, F., Vargas, F., Elijah, E. O., Quinn, R. A., Park, D. I., Herzog, D. P., Müller, M. B., Gentry, E. C., Knight, R. D., González, A., et al. (2020) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2020.00518 · Cited by 30
Weickert, M. O., Hattersley, J. G., Kyrou, I., Arafat, A. M., Rudovich, N., Roden, M., Nowotny, P., von Loeffelholz, C., Matysik, S., Schmitz, G., et al. (2018) · Nutrition & Diabetes · doi:10.1038/s41387-018-0020-6 · Cited by 29
Koulas, S. G., Stefanou, C. K., Stefanou, S. K., Tepelenis, K., Zikos, N., Tepetes, K., & Kapsoritakis, A. N. (2020) · Obesity Surgery · doi:10.1007/s11695-020-05074-2 · Cited by 29
van der Lugt, B., Vos, M. C. P., Bromhaar, M. G., Ijssennagger, N., Vrieling, F., Meijerink, J., & Steegenga, W. T. (2022) · Heliyon · doi:10.1016/j.heliyon.2022.e08883 · Cited by 26
Jung, E. S., Park, H. M., Hyun, S. M., Shon, J. C., Singh, D., Liu, K., Whon, T. W., Bae, J., Hwang, J. S., & Lee, C. H. (2017) · PLoS ONE · doi:10.1371/journal.pone.0187154 · Cited by 25
Fish oil alleviates circadian bile composition dysregulation in male mice with NAFLD
Liu, Y., Li, Q., Wang, H., Zhao, X.-J. G., Li, N., Zhang, H., Chen, G., & Liu, Z. (2019) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2019.03.005 · Cited by 25
The Role of the Gut Microbiome in Nonalcoholic Fatty Liver Disease
Roychowdhury, S., Selvakumar, P. K. C., & Cresci, G. (2018) · Medical Sciences · doi:10.3390/medsci6020047 · Cited by 26
“The intestinal immune functions and barrier are regulated by bile acid transformation and receptor activation; therefore, gut dysbiosis is associated with altered bile acid metabolism and inflammation [47].”
BackgroundDrzymała-Czyż, S., Dziedzic, K., Szwengiel, A., Krzyżanowska-Jankowska, P., Nowak, J. K., Nowicka, A., Aringazina, R. A., Drzymała, S., Kashirskaya, N. Y., & Walkowiak, J. (2021) · Digestive and Liver Disease · doi:10.1016/j.dld.2021.06.034 · Cited by 24
Boyajian, J. L., Islam, P., Abosalha, A. K., Schaly, S., Thareja, R., Kassab, A., Arora, K., Santos, M., Shum-Tim, C., & Prakash, S. (2024) · Microbiome Research Reports · doi:10.20517/mrr.2024.05 · Cited by 24
Gut microbiota and fecal metabolic signatures in rat models of disuse-induced osteoporosis
Qiao, X., Zhang, K., Li, X., Lv, Z., Wei, W., Zhou, R., Yan, L., Pan, Y., Yang, S., Sun, X., et al. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.1018897 · Cited by 22
“VDR can be activated by LCA; the degree of activation is largely influenced by the GM (Jones et al., 2014).”
BackgroundBile-ology: from bench to bedside
Jin, L., Fang, Z., Fan, M.-J., & Huang, W. (2019) · Journal of Zhejiang University SCIENCE B · doi:10.1631/jzus.b1900158 · Cited by 22
Role of pregnane X-receptor in regulating bacterial translocation in chronic liver diseases
Mohandas, S., & Vairappan, B. (2017) · World Journal of Hepatology · doi:10.4254/wjh.v9.i32.1210 · Cited by 21
Proteomics Analysis in Dairy Products: Cheese, a Review
Bouroutzika, E. V., Proikakis, S., Anagnostopoulos, A. K., Katsafadou, A. I., Fthenakis, G. C., & Tsangaris, G. T. (2021) · Applied Sciences · doi:10.3390/app11167622 · Cited by 23
Wu, L., Gao, Y., Su, Y. B., Li, J., Ren, W.-C., Qiu-Hong, W. A. N. G., & Kuang, H. (2022) · Chinese Journal of Natural Medicines · doi:10.1016/s1875-5364(22)60210-3 · Cited by 21
Microbiota, Liver Diseases, and Alcohol
Cassard, A., Gérard, P., & Perlemuter, G. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.bad-0007-2016 · Cited by 21
“The synthesis of BAs is dependent on a negativefeedback loop following FXR activation (102, 103).”
BackgroundGut microbes in gastrointestinal cancers
Wang, F., Song, M., Lu, X., Zhu, X., & Deng, J. (2021) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2021.03.037 · Cited by 21
A shift in paradigm towards human biology‐based systems for cholestatic‐liver diseases
Noor, F. (2015) · The Journal of Physiology · doi:10.1113/jp271124 · Cited by 19
“The gut microbiota plays an important role in BA homeostasis (Jones et al. 2014), energy regulation and metabolism (Nieuwdorp et al.”
BackgroundParapini, M. L., Skipworth, J. R. A., Mah, A., Desai, S., Chung, S. W., Scudamore, C. H., Segedi, M., Vasilyeva, E., Li, J. S. Y., & Kim, P. T. (2021) · HPB · doi:10.1016/j.hpb.2021.06.428 · Cited by 18
Noh, C., Jung, W., Yang, M. J., Kim, W., & Hwang, J. C. (2023) · International Journal of Surgery · doi:10.1097/js9.0000000000000518 · Cited by 18
“Not all microbial species are involved in BA synthesis, and because BA has bactericidal effects, the amount and concentration of bile in fl uence microbial species, which in turn affects BA metabolism [39] .”
Hu, Y., Li, M., Ding, L., Peng, C., Wu, Y., Liu, W., Zhao, D., Qin, L., Guo, X., Wu, L., et al. (2023) · Journal of Functional Foods · doi:10.1016/j.jff.2023.105622 · Cited by 18
Liu, J., Hefni, M. E., Witthöft, C. M., Bergström, M., Burleigh, S., NYMAN, M. E., & Hållenius, F. F. (2022) · Nutrients · doi:10.3390/nu14050937 · Cited by 17
“Previous studies have suggested that the gut microbiota can be a factor in the progression of atherosclerosis [67].”
BackgroundRole of the Gut in Modulating Lipoprotein Metabolism
Hennessy, A. A., Ross, R. P., Fitzgerald, G. F., Caplice, N. M., & Stanton, C. (2014) · Current Cardiology Reports · doi:10.1007/s11886-014-0515-2 · Cited by 17
Importance of Bile Composition for Diagnosis of Biliary Obstructions
Krupa, Ł., Staroń, R., Dulko, D., Łozińska, N., Mackie, A. R., Rigby, N. M., Macierzanka, A., Markiewicz, A., & Jungnickel, C. (2021) · Molecules · doi:10.3390/molecules26237279 · Cited by 14
A sequence symmetry analysis of the interrelationships between statins, diabetes and skin infections
Ko, H. H. T., Lareu, R. R., Dix, B. R., Hughes, J., & Parsons, R. W. (2019) · British Journal of Clinical Pharmacology · doi:10.1111/bcp.14077 · Cited by 12
“Disruption of the human gut microbiome, or gut dysbiosis, has been associated with the impaired metabolism of bile acids, which may impede glucose control and diminish innate immunity.(23) Bile acids regulate glucose homeostasis through the activation of nuclear receptors such as the pregnane X receptor, andmount anti…”
BackgroundIn vitro models to detect in vivo bile acid changes induced by antibiotics
Zhang, N., Wang, J., Bakker, W., Zheng, W., Baccaro, M., Murali, A., van Ravenzwaay, B., & Rietjens, I. M. C. M. (2022) · Archives of Toxicology · doi:10.1007/s00204-022-03373-4 · Cited by 11
Probiotics in Pediatric Liver Disease
Miloh, T. (2015) · Journal of Clinical Gastroenterology · doi:10.1097/mcg.0000000000000365 · Cited by 11
Tang, X., Chen, X., Ferrari, M. D. L., Walvoort, M. T. C., & de Vos, P. (2024) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202300910 · Cited by 10
The Gallbladder and Vermiform Appendix Influence the Assemblage of Intestinal Microorganisms
Chen, J., Sali, A., & Vitetta, L. (2020) · Future Microbiology · doi:10.2217/fmb-2019-0325 · Cited by 9
Electrolyte Secretion and Absorption in the Small Intestine and Colon
Barrett, K. E., & Keely, S. J. (2015) · Yamada's Textbook of Gastroenterology · doi:10.1002/9781118512074.ch24 · Cited by 9
López-Tenorio, I. I., Aguilar-Villegas, Ó. R., Espinoza-Palacios, Y., Segura-Real, L., Peña-Aparicio, B., Amedei, A., & Aguirre‐García, M. M. (2024) · Biomedicines · doi:10.3390/biomedicines12112529 · Cited by 11
Partial ileal bypass affords protection from onset of type 2 diabetes
Buchwald, H., Oien, D. M., Schieber, D. J., Bantle, J. P., & Connett, J. E. (2016) · Surgery for Obesity and Related Diseases · doi:10.1016/j.soard.2016.01.025 · Cited by 8
Sun, X., Hu, X., Zhang, Q., Li, Z., Sun, X., Li, Y., & Jin, M. (2023) · International Immunopharmacology · doi:10.1016/j.intimp.2023.110544 · Cited by 7
OBESIDADE E SUA RELAÇÃO COM A MICROBIOTA INTESTINAL
Schmidt, L., Soder, T. F., Deon, R. G., & Benetti, F. (2018) · Revista Interdisciplinar de Estudos em Saúde · doi:10.33362/ries.v6i2.1089 · Cited by 7
Liu, J., Hefni, M. E., Witthöft, C. M., Bergström, M., Burleigh, S., NYMAN, M. E., & Hållenius, F. F. (2022) · International Journal of Food Sciences and Nutrition · doi:10.1080/09637486.2022.2106358 · Cited by 7
“Dysbiosis of gut microbiota, characterised by ʻ imbalance ’ due to changes in community members or in relative abundance of microbes (Messer and Chang 2018), has also been proven to contribute to the development of atherosclerosis (Jones et al. 2014).”
BackgroundWang, Y., Zhang, Y., He, Y., Zhang, S., Huang, B., Wang, Y., Lin, W., Xiao, W., Zou, Z., & Cui, G. (2025) · Frontiers in Nutrition · doi:10.3389/fnut.2025.1564177 · Cited by 6
The Role of Diet in Shaping Gut Microbiota and Its Impact on Host Metabolic Regulation
Hernández-Valles, A. E., Martínez-Machado, G., Alvarado-Mata, L. Y., Ortíz, C. E., Nimmakayala, P., Balagurusamy, N., & Reddy, U. K. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27062768 · Cited by 7
“Consequently, fewer metabolic functions are available, increasing the risk of loss of host homeostasis (Figure 3) [60].”
He, Q., Xia, B., Yang, M. S., Lu, K., Fan, D., Li, W., Liu, Y., Pan, Y., & Yuan, J. (2024) · The FASEB Journal · doi:10.1096/fj.202302558r · Cited by 6
Metadata
- Authors
- Jones, M. L., Martoni, C. J., Ganopolsky, J. G., Labbé, A., & Prakash, S.
- Affiliations
- Micropharma (Canada) (CA)
- Venue
- Expert Opinion on Biological Therapy
- Publisher
- Informa UK Limited
- Published
- 2014-01-30
- Volume
- 14
- Issue
- 4
- Pages
- 467-482
- ISSN
- 1471-2598 (ISSN-L)
- 1744-7682
- OpenAlex
- W2014099400
- Cited by
- 150
- References
- 128
- Citations by year
- 2026: 13 · 2025: 5 · 2024: 8 · 2023: 9 · 2022: 17 · 2021: 20 · 2020: 10 · 2019: 12 · 2018: 12 · 2017: 14 · 2016: 11 · 2015: 12 · 2014: 7
- FWCI
- 1.38
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Expert Opinion on Biological Therapy (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Keywords
- gut microbiota, bile acid metabolism, dysbiosis, bile salt hydrolase, probiotics, glucose homeostasis, cholesterol metabolism, intestinal homeostasis, chronic degenerative diseases, metagenomics, metaproteomics, metabolomics
- MeSH terms
- Animals, Bile Acids and Salts, Diabetes Mellitus, Type 2, Female, Gastrointestinal Diseases, Health Status, Humans, Male, Metabolic Diseases, Obesity, Osteoporosis, Probiotics, Atherosclerosis, Microbiota, Dysbiosis
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