Potential of fecal microbiota for early-stage detection of colorectal cancer
Zeller, Georg, Tap, Julien, Voigt, Anita Y, Sunagawa, Shinichi, Kultima, Jens Roat, Costea, Paul I, Amiot, Aurélien, Böhm, Jürgen, Brunetti, Francesco, Habermann, Nina, Hercog, Rajna, Koch, Moritz, Luciani, Alain, Mende, Daniel R, Schneider, Martin A, Schrotz‐King, Petra, Tournigand, Christophe, Tran Van Nhieu, Jeanne, Yamada, Takuji, Zimmermann, Jürgen, Benes, Vladimir, Kloor, Matthias, Ulrich, Cornelia M, von Knebel Doeberitz, Magnus, Sobhani, Iradj, Bork, Peer·2014·Molecular Systems Biology
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