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Cell Shape Dynamics in Escherichia coli
Open accessAbstract
Bacteria are the simplest living organisms. In particular, Escherichia coli has been extensively studied and it has become one of the standard model systems in microbiology. However, optical microscopy studies of single E. coli have been limited by its small size, approximately 1 x 3 microm, not much larger than the optical resolution, approximately 0.25 microm. As a result, not enough quantitative dynamical information on the life cycle of single E. coli is presently available. We suggest that, by careful analysis of images from phase contrast and fluorescence time-lapse microscopy, this limitation can be bypassed. For example, we show that applying this approach to monitoring morphogenesis in individual E. coli leads to a simple, quantitative description of this process. First, we find the time when the formation of the septum starts, tau(c). It occurs much earlier than the time when the constriction can be directly observed by phase contrast. Second, we find that the growth law of single cells is more likely bilinear/trilinear than exponential. This is further supported by the relations that hold between the corresponding growth rates. These methods could be further extended to study the dynamics of cell components, e.g., the nucleoid and the Z-ring.
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“Furthermore, the rapid self-proliferation of living cells increases the difficulty of estimating their exact concentrations15.”
From Label-Free Detection of Single Living Bacteria via Electrochemical Collision Event (2016) · cites this paper as [15]
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Cites
Escherichia coli and Salmonella :cellular and molecular biology
Neidhardt, F. C. (1996) · ASM Press eBooks · Cited by 8,197
FtsZ ring structure associated with division in Escherichia coli
Bi, E., & Lutkenhaus, J. (1991) · Nature · doi:10.1038/354161a0 · Cited by 1,471
de Boer, P. A. J., Crossley, R. E., & Rothfield, L. I. (1989) · Cell · doi:10.1016/0092-8674(89)90586-2 · Cited by 776
Raskin, D. M., & de Boer, P. A. J. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.9.4971 · Cited by 745
Bacterial Cell Wall Synthesis: New Insights from Localization Studies
Scheffers, D., & Pinho, M. G. (2005) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.69.4.585-607.2005 · Cited by 631
MINIATURE escherichia coli CELLS DEFICIENT IN DNA
Adler, H. I., Fisher, W. D., Cohen, A., & Hardigree, A. A. (1967) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.57.2.321 · Cited by 623
Errington, J., Daniel, R. A., & Scheffers, D. (2003) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.67.1.52-65.2003 · Cited by 613
Ma, X., Ehrhardt, D. W., & Margolin, W. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.23.12998 · Cited by 447
Viollier, P. H., Thanbichler, M., McGrath, P. T., West, L. E., Meewan, M., McAdams, H., & Shapiro, L. (2004) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0402606101 · Cited by 435
Hu, Z., & Lutkenhaus, J. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01575.x · Cited by 434
Wu, L. J., & Errington, J. (2004) · Cell · doi:10.1016/j.cell.2004.06.002 · Cited by 412
MinDE-Dependent Pole-to-Pole Oscillation of Division Inhibitor MinC in Escherichia coli
Raskin, D. M., & de Boer, P. D. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.20.6419-6424.1999 · Cited by 405
Murein segregation in Escherichia coli
de Pedro, M. A., Quintela, J. C., Höltje, J. V., & Schwarz, H. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.9.2823-2834.1997 · Cited by 388
Weiss, D. S., Chen Joseph, C., Ghigo, J., Boyd, D. H., & Beckwith, J. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.2.508-520.1999 · Cited by 386
Rothfield, L. I., Justice, S. S., & Garcı́a-Lara, J. (1999) · Annual Review of Genetics · doi:10.1146/annurev.genet.33.1.423 · Cited by 384
Meinhardt, H., & de Boer, P. A. J. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.251216598 · Cited by 366
Shih, Y., Lê, T. T., & Rothfield, L. I. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1232225100 · Cited by 349
Themes and variations in prokaryotic cell division.
Margolin, W. (2000) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2000.tb00554.x · Cited by 325
Dynamic structures in Escherichia coli : Spontaneous formation of MinE rings and MinD polar zones
Huang, K. C., Meir, Y., & Wingreen, N. S. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2135445100 · Cited by 282
Growth, Cell and Nuclear Divisions in some Bacteria
Schaechter, M., Williamson, J. P., Hood, J. R., & Koch, A. L. (1962) · Journal of General Microbiology · doi:10.1099/00221287-29-3-421 · Cited by 275
Levin, P. A., & Losick, R. M. (1996) · Genes & Development · doi:10.1101/gad.10.4.478 · Cited by 260
Morphogenesis of Escherichia coli
Nanninga, N. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.1.110-129.1998 · Cited by 251
Yu, X., & Margolin, W. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01351.x · Cited by 249
FtsZ Exhibits Rapid Movement and Oscillation Waves in Helix-like Patterns in Escherichia coli
Thanedar, S., & Margolin, W. (2004) · Current Biology · doi:10.1016/j.cub.2004.06.048 · Cited by 234
Cell length, cell growth and cell division
Donachie, W. D., Begg, K. J., & Vicente, M. (1976) · Nature · doi:10.1038/264328a0 · Cited by 229
The size control of fission yeast revisited
Sveiczer, Á., Novák, B., & Mitchison, J. M. (1996) · Journal of Cell Science · doi:10.1242/jcs.109.12.2947 · Cited by 223
Fu, X., Shih, Y., Zhang, Y., & Rothfield, L. I. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.031549298 · Cited by 221
Changes in cell diameter during the division cycle of Escherichia coli
Trueba, F. J., & Woldringh, C. L. (1980) · Journal of Bacteriology · doi:10.1128/jb.142.3.869-878.1980 · Cited by 217
Dynamic Compartmentalization of Bacteria: Accurate Division inE. Coli
Howard, M., Rutenberg, A. D., & de Vet, S. (2001) · Physical Review Letters · doi:10.1103/physrevlett.87.278102 · Cited by 200
Development of side branching in dendritic crystal growth
Dougherty, A., Kaplan, P. D., & Gollub, J. P. (1987) · Physical Review Letters · doi:10.1103/physrevlett.58.1652 · Cited by 196
Timing of FtsZ Assembly in Escherichia coli
den Blaauwen, T., Buddelmeijer, N., Aarsman, M. E. G., Hameete, C. M., & Nanninga, N. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.17.5167-5175.1999 · Cited by 191
Addinall, S. G., & Lutkenhaus, J. (1996) · Molecular Microbiology · doi:10.1046/j.1365-2958.1996.00100.x · Cited by 187
Rate of Growth of Bacillus cereus Between Divisions
Collins, J. F., & Richmond, M. H. (1962) · Journal of General Microbiology · doi:10.1099/00221287-28-1-15 · Cited by 187
Toporegulation of bacterial division according to the nucleoid occlusion model
Woldringh, C. L., Mulder, E., Huls, P. G., & Vischer, N. O. E. (1991) · Research in Microbiology · doi:10.1016/0923-2508(91)90046-d · Cited by 181
A Dynamic Model for Determining the Middle of Escherichia coli
Kruse, K. (2002) · Biophysical Journal · doi:10.1016/s0006-3495(02)75426-x · Cited by 170
Mulder, E., & Woldringh, C. L. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.8.4303-4314.1989 · Cited by 165
Several distinct localization patterns for penicillin‐binding proteins in Bacillus subtilis
Scheffers, D., Jones, L. J. F., & Errington, J. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03854.x · Cited by 159
Control of cell length in Bacillus subtilis
Sargent, M. G. (1975) · Journal of Bacteriology · doi:10.1128/jb.123.1.7-19.1975 · Cited by 156
den Blaauwen, T., Aarsman, M. E. G., Vischer, N. O. E., & Nanninga, N. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03316.x · Cited by 139
The tubulin ancestor, FtsZ, draughtsman, designer and driving force for bacterial cytokinesis.
Addinall, S., & Holland, B. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00024-4 · Cited by 139
Assembly of cell division proteins at the E. coli cell center
Buddelmeijer, N., & Beckwith, J. (2002) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(02)00374-0 · Cited by 137
Dynamic Compartmentalization of Bacteria
Howard, M., Rutenberg, A. D., & de Vet, S. (2001) · Technische Universität Dortmund Eldorado (Technische Universität Dortmund) · doi:10.17877/de290r-11786 · Cited by 135
Spatial and temporal organization of the Bacillus subtilis replication cycle
Berkmen, M. B., & Grossman, A. D. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05356.x · Cited by 134
Teather, R. M., Collins, J. F., & Donachie, W. D. (1974) · Journal of Bacteriology · doi:10.1128/jb.118.2.407-413.1974 · Cited by 132
Pattern Formation inside Bacteria: Fluctuations due to the Low Copy Number of Proteins
Howard, M., & Rutenberg, A. D. (2003) · Physical Review Letters · doi:10.1103/physrevlett.90.128102 · Cited by 124
Dimensions of Escherichia coli at various growth rates: model for envelope growth
Pierucci, O. (1978) · Journal of Bacteriology · doi:10.1128/jb.135.2.559-574.1978 · Cited by 119
MinD and role of the deviant Walker A motif, dimerization and membrane binding in oscillation
Lutkenhaus, J., & Sundaramoorthy, M. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03427.x · Cited by 115
Size variations and correlation of different cell cycle events in slow-growing Escherichia coli
Koppes, L. J. H., Woldringh, C. L., & Nanninga, N. (1978) · Journal of Bacteriology · doi:10.1128/jb.134.2.423-433.1978 · Cited by 115
Morphogenesis of Escherichia coli
Vollmer, W. (2001) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(01)00261-2 · Cited by 109
Dougherty, T. J., Kennedy, K., KESSLER, R. E., & Pucci, M. J. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.21.6110-6115.1996 · Cited by 104
Cooper, S. (2006) · Theoretical Biology and Medical Modelling · doi:10.1186/1742-4682-3-10 · Cited by 100
Review lecture on the growth and form of a bacterial cell
Pritchard, R. H. (1974) · Philosophical transactions of the Royal Society of London. Series B, Biological sciences · doi:10.1098/rstb.1974.0003 · Cited by 99
Assembly of the FtsZ ring at the central division site in the absence of the chromosome
Sun, Q., Yu, X., & Margolin, W. (1998) · Molecular Microbiology · doi:10.1046/j.1365-2958.1998.00942.x · Cited by 98
Initiation and Velocity of Chromosome Replication in Escherichia coli B/r and K-12
Bipatnath, M., Dennis, P. P., & Bremer, H. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.2.265-273.1998 · Cited by 97
Division accuracy in a stochastic model of Min oscillations in Escherichia coli
Kerr, R. A., Levine, H., B, T. J. S. A., & Rappel, W. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505825102 · Cited by 89
Osmotic stress mechanically perturbs chemoreceptors in Escherichia coli
Vaknin, A., & Berg, H. C. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510047103 · Cited by 83
Cell growth and length distribution in Escherichia coli
Cullum, J., & Vicente, M. (1978) · Journal of Bacteriology · doi:10.1128/jb.134.1.330-337.1978 · Cited by 78
Cytokinesis in Prokaryotes and Eukaryotes: Common Principles and Different Solutions
Nanninga, N. (2001) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.65.2.319-333.2001 · Cited by 68
Influence of the Nucleoid on Placement of FtsZ and MinE Rings inEscherichia coli
Sun, Q., & Margolin, W. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.4.1413-1422.2001 · Cited by 67
Genomic channeling in bacterial cell division
Mingorance, J., Tamames, J., & Vicente, M. (2004) · Journal of Molecular Recognition · doi:10.1002/jmr.718 · Cited by 65
On dimensional determination of rod-shaped bacteria
Zaritsky, A. (1975) · Journal of Theoretical Biology · doi:10.1016/s0022-5193(75)80129-9 · Cited by 65
Elongation of rod-shaped bacteria
Grover, N. B., Woldringh, C. L., Zaritsky, A., & Rosenberger, R. F. (1977) · Journal of Theoretical Biology · doi:10.1016/0022-5193(77)90192-8 · Cited by 63
HU-GFP and DAPI co-localize on the Escherichia coli nucleoid
Wery, M., Woldringh, C. L., & Rouvière‐Yaniv, J. (2001) · Biochimie · doi:10.1016/s0300-9084(01)01254-8 · Cited by 62
Increase in cell mass during the division cycle of Escherichia coli B/rA
KUBITSCHEK, H. E. (1986) · Journal of Bacteriology · doi:10.1128/jb.168.2.613-618.1986 · Cited by 56
Bilinear cell growth of Escherichia coli
KUBITSCHEK, H. E. (1981) · Journal of Bacteriology · doi:10.1128/jb.148.2.730-733.1981 · Cited by 46
Cooper, S. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.1.436-438.1988 · Cited by 44
Patchiness of murein insertion into the sidewall of Escherichia coli
de Pedro, M. A., Schwarz, H., & Koch, A. L. (2003) · Microbiology · doi:10.1099/mic.0.26125-0 · Cited by 43
DNA replication pattern and cell wall growth in Escherichia coli PAT 84
Koppes, L. J. H., Overbeeke, N., & Nanninga, N. (1978) · Journal of Bacteriology · doi:10.1128/jb.133.3.1053-1061.1978 · Cited by 43
Dimensional regulation of cell-cycle events in Escherichia coli during steady-state growth
Grover, N. B., & Woldringh, C. L. (2001) · Microbiology · doi:10.1099/00221287-147-1-171 · Cited by 38
Control of microbial surface-growth by density
Rosenberger, R. F., Grover, N. B., Zaritsky, A., & Woldringh, C. L. (1978) · Nature · doi:10.1038/271244a0 · Cited by 38
Single cell studies of the cell cycle and some models
Mitchison, J. M. (2005) · Theoretical Biology and Medical Modelling · doi:10.1186/1742-4682-2-4 · Cited by 34
Forces, Growth and Form in Soft Condensed Matter: At the Interface between Physics and Biology
Skjeltorp, A. T., & Belushkin, Α. V. (2004) · NATO science series. Series II, Mathematics, physics and chemistry · doi:10.1007/1-4020-2340-5 · Cited by 32
Buchwald, P., & Sveiczer, Á. (2006) · Theoretical Biology and Medical Modelling · doi:10.1186/1742-4682-3-16 · Cited by 28
Time-Lapse Photomicrography of Cell Growth and Division in Escherichia coli
Hoffman, H., & Frank, M. E. (1965) · Journal of Bacteriology · doi:10.1128/jb.89.1.212-216.1965 · Cited by 28
Cell elongation and division probability during the Escherichia coli growth cycle
KUBITSCHEK, H. E., & Woldringh, C. L. (1983) · Journal of Bacteriology · doi:10.1128/jb.153.3.1379-1387.1983 · Cited by 26
Length growth of two Escherichia coli B/r substrains
Meyer, M., de Jong, M., Demets, R., & Nanninga, N. (1979) · Journal of Bacteriology · doi:10.1128/jb.138.1.17-23.1979 · Cited by 26
Length extension in growing yeast: is growth exponential? - Yes
Cooper, S. (1998) · Microbiology · doi:10.1099/00221287-144-2-263 · Cited by 20
Length growth in fission yeast: is growth exponential? - No
Mitchison, J. M., Sveiczer, Á., & Novák, B. (1998) · Microbiology · doi:10.1099/00221287-144-2-265 · Cited by 17
Lutkenhaus, J. (1990) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(90)90013-5 · Cited by 12
Bacterial cytokinesis: Let the light shine in
Lutkenhaus, J. (1997) · Current Biology · doi:10.1016/s0960-9822(06)00285-5 · Cited by 11
Size, volume, length and the control of the bacterial division cycle
Cooper, S. (2001) · Microbiology · doi:10.1099/00221287-147-10-2629 · Cited by 4
Cytokinesis: The Initial Linear Phase Crosses Over to a Multiplicity of Non-Linear Endings
Biron, D., Libros, P., Sagi, D., Mirelman, D., & Moses, E. (2004) · NATO science series. Series II, Mathematics, physics and chemistry · doi:10.1007/1-4020-2340-5_13 · Cited by 3
Research works printed but not linked: 1
- Marr, 1969, Growth and division of individual bacteria, Symp. Soc. Gen. Microbiol., 19, 237
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Using buoyant mass to measure the growth of single cells
Godin, M., Delgado, F. F., Son, S., Grover, W. H., Bryan, A. K., Tzur, A., Jorgensen, P., Payer, K., Grossman, A. D., Kirschner, M. W., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1452 · Cited by 394
Optical measurement of cycle-dependent cell growth
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Hameed, S. F., Xie, L., & Ying, Y. B. (2018) · Trends in Food Science & Technology · doi:10.1016/j.tifs.2018.05.020 · Cited by 402
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Metadata
- Authors
- Reshes, G., Vanounou, S., Fishov, I., & Feingold, M.
- Affiliations
- Ben-Gurion University of the Negev (IL)
- Corresponding author
- Fishov, Itzhak
- Venue
- Biophysical Journal
- Publisher
- Elsevier BV
- Published
- 2008-01
- Volume
- 94
- Issue
- 1
- Pages
- 251-264
- ISSN
- 0006-3495 (ISSN-L)
- PMC
- PMC2134870
- OpenAlex
- W2025598949
- Cited by
- 226
- References
- 82
- Citations by year
- 2026: 12 · 2025: 9 · 2024: 16 · 2023: 9 · 2022: 13 · 2021: 20 · 2020: 27 · 2019: 17 · 2018: 11 · 2017: 14 · 2016: 17 · 2015: 10 · 2014: 11 · 2013: 8 · 2012: 4
- FWCI
- 3.94
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- Biophysical Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Israel Academy of Sciences and Humanities (820/05)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Cell Image Analysis Techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Advanced Fluorescence Microscopy Techniques
- Keywords
- Escherichia coli, cell shape dynamics, bacterial morphogenesis, cell division, septum formation, cell constriction, single-cell imaging, time-lapse microscopy, phase contrast microscopy, fluorescence microscopy, Z-ring, nucleoid
- MeSH terms
- Computer Simulation, Escherichia coli, Image Interpretation, Computer-Assisted, Models, Biological, Cell Enlargement
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