The DOI matches its Crossref record; 41 of the 41 references it cites were found in a registry or an index.
Genetic Redundancy in Soybean Photoresponses Associated With Duplication of the Phytochrome A Gene
Open accessAbstract
Gene and genome duplications underlie the origins of evolutionary novelty in plants. Soybean, Glycine max, is considered to be a paleopolyploid species with a complex genome. We found multiple homologs of the phytochrome A gene (phyA) in the soybean genome and determined the DNA sequences of two paralogs designated GmphyA1 and GmphyA2. Analysis of the GmphyA2 gene from the lines carrying a recessive allele at a photoperiod insensitivity locus, E4, revealed that a Ty1/copia-like retrotransposon was inserted in exon 1 of the gene, which resulted in dysfunction of the gene. Mapping studies suggested that GmphyA2 is encoded by E4. The GmphyA1 gene was mapped to a region of linkage group O, which is homeologous to the region harboring E4 in linkage group I. Plants homozygous for the e4 allele were etiolated under continuous far red light, but the de-etiolation occurred partially, indicating that the mutation alone did not cause a complete loss of phyA function. The genetic redundancy suggests that the presence of duplicated copies of phyA genes accounts for the generation of photoperiod insensitivity, while protecting against the deleterious effects of mutation. Thus, this phenomenon provides a link between gene duplication and establishment of an adaptive response of plants to environments.
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Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.22.4673 · Cited by 64,617
Preservation of Duplicate Genes by Complementary, Degenerative Mutations
Force, A., Lynch, M., Pickett, F. B., Amores, A., Yan, Y.-L., & Postlethwait, J. (1999) · Genetics · doi:10.1093/genetics/151.4.1531 · Cited by 3,529
The Probability of Duplicate Gene Preservation by Subfunctionalization
Lynch, M., & Force, A. (2000) · Genetics · doi:10.1093/genetics/154.1.459 · Cited by 1,550
Polyploidy and genome evolution in plants
Adams, K. L., & Wendel, J. F. (2005) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2005.01.001 · Cited by 1,343
Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics
Maquat, L. E. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1310 · Cited by 1,214
Napoli, C., Lemieux, C., & Jorgensen, R. (1990) · The Plant Cell · doi:10.2307/3869076 · Cited by 1,101
Kumar, A., & Bennetzen, J. L. (1999) · Annual Review of Genetics · doi:10.1146/annurev.genet.33.1.479 · Cited by 1,053
The Origins of Genomic Duplications in Arabidopsis
Vision, T. J., Brown, D. G., & Tanksley, S. D. (2000) · Science · doi:10.1126/science.290.5499.2114 · Cited by 1,038
The evolution of functionally novel proteins after gene duplication
(1994) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.1994.0058 · Cited by 1,007
The shade avoidance syndrome: multiple responses mediated by multiple phytochromes
SMITH, H., & WHITELAM, G. C. (1997) · Plant, Cell & Environment · doi:10.1046/j.1365-3040.1997.d01-104.x · Cited by 722
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The impact of transposable elements in environmental adaptation
Casacuberta, E., & González, J. (2013) · Molecular Ecology · doi:10.1111/mec.12170 · Cited by 607
Xia, Z., Watanabe, S., Yamada, T., Tsubokura, Y., Nakashima, H., Zhai, H., Anai, T., Sato, S., Yamazaki, T., Lü, S., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1117982109 · Cited by 458
Self-citationNatural variation at the soybean J locus improves adaptation to the tropics and enhances yield
Lu, S., Zhao, X., Hu, Y., Liu, S., Nan, H., Li, X., Fang, C., Cao, D., Shi, X., Kong, L., et al. (2017) · Nature Genetics · doi:10.1038/ng.3819 · Cited by 414
Self-citationSoybean domestication: the origin, genetic architecture and molecular bases
Sedivy, E. J., Wu, F., & Hanzawa, Y. (2017) · New Phytologist · doi:10.1111/nph.14418 · Cited by 300
Zhang, J., Song, Q., Cregan, P. B., Nelson, R. L., Wang, X., Wu, J., & Jiang, G.-L. (2015) · BMC Genomics · doi:10.1186/s12864-015-1441-4 · Cited by 276
Metadata
- Authors
- Liu, B., Kanazawa, A., Matsumura, H., Takahashi, R., Harada, K., & Abe, J.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-10-01
- Volume
- 180
- Issue
- 2
- Pages
- 995-1007
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W2125249328
- Cited by
- 381
- References
- 41
- FWCI
- 9.64
- Type
- journal article
- Language
- en
- Open access
- green
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