Schwede, Torsten

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

Mariani, V., Biasini, M., Barbato, A., & Schwede, T. (2013) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 1,138

Critical assessment of methods of protein structure prediction (CASP)—Round XIII

Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K., & Moult, J. (2019) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 506

Critical assessment of methods of protein structure prediction (CASP)—Round XIV

Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K., & Moult, J. (2021) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 503

Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12

Haas, J., Barbato, A., Behringer, D., Studer, G., Roth, S., Bertoni, M., Mostaguir, K., Gumienny, R., & Schwede, T. (2018) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 168

Critical assessment of methods of protein structure prediction ( CASP )—Round XV

Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K., & Moult, J. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 148

Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone

Pantolini, L., Studer, G., Pereira, J., Durairaj, J., & Schwede, T. (2022) · Bioinformatics

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 55

Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone

Pantolini, L., Studer, G., Pereira, J., Durairaj, J., Tauriello, G., & Schwede, T. (2024) · Bioinformatics

Machine Learning in BioinformaticsGenomics and Phylogenetic Studies

Cited by 55

New prediction categories in CASP15

Kryshtafovych, A., Antczak, M., Szachniuk, M., Zok, T., Kretsch, R. C., Rangan, R., Pham, P., Das, R., Robin, X., Studer, G., et al. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 54

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · GigaScience

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 32

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Vallat, B., Tauriello, G., Bienert, S., Haas, J., Webb, B. M., Žídek, A., Zheng, W., Peisach, E., Piehl, D. W., Anischanka, I., et al. (2023) · Journal of Molecular Biology

Enzyme Structure and FunctionProtein Structure and Dynamics

Cited by 26

Structural implications of BK polyomavirus sequence variations in the major viral capsid protein Vp1 and large T-antigen: a computational study

Durairaj, J., Follonier, O. M., Leuzinger, K., Alexander, L. T., Wilhelm, M., Pereira, J., Hillenbrand, C. A., Weissbach, F. H., Schwede, T., & Hirsch, H. H. (2023) · mSphere

Polyomavirus and related diseasesvaccines and immunoinformatics approaches

Cited by 23

Evaluating generalization in protein–ligand cofolding methods

Škrinjar, P., Eberhardt, J., Studer, G., Tauriello, G., Schwede, T., & Durairaj, J. (2026) · Nature Structural & Molecular Biology

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 22

AlphaPulldown2—a general pipeline for high-throughput structural modeling

Molodenskiy, D., Maurer, V. J., Yu, D., Chojnowski, G., Bienert, S., Tauriello, G., Gilep, K., Schwede, T., & Kosinski, J. (2025) · Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 15

A fully automated benchmarking suite to compare macromolecular complexes

Studer, G., Robin, X., Bienert, S., Durairaj, J., Škrinjar, P., Tauriello, G., Waterhouse, A. M., & Schwede, T. (2026) · Nature Methods

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 10

Outer membrane β-barrel structure prediction through the lens of AlphaFold2

Topitsch, A., Schwede, T., & Pereira, J. (2022) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 9

Outer membrane β‐barrel structure prediction through the lens of AlphaFold2

Topitsch, A., Schwede, T., & Pereira, J. (2024) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 9

Critical Assessment of Methods of Protein Structure Prediction (CASP) – Round XV

Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K., & Moult, J. (2023)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 5

New prediction categories in CASP15

Kryshtafovych, A., Antczak, M., Szachniuk, M., Zok, T., Kretsch, R. C., Rangan, R., Pham, P., Das, R., Robin, X., Studer, G., et al. (2023)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 4

3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Varadi, M., Nair, S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hassabis, D., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2

AlphaPulldown2 – A General Pipeline for High-Throughput Structural Modeling

Molodenskiy, D., Maurer, V. J., Yu, D., Chojnowski, G., Bienert, S., Tauriello, G., Gilep, K., Schwede, T., & Kosinski, J. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 0