Mitochondrial transcription factor A (TFAM) gene variation and risk of late-onset Alzheimer's disease
Open accessAbstract
Impaired mitochondrial function and an increased number of mutations in mitochondrial DNA (mtDNA) has been found in brains of patients with late-onset Alzheimer's disease (LOAD). The TFAM-gene encodes the mitochondrial transcription factor A, a protein that controls the transcription, replication, damage sensing, and repair of mtDNA. TFAM is on human chromosome region 10q21.1, where a locus for LOAD has been mapped. Our objective was to determine the role of TFAM-gene variation in the risk of LOAD. The seven TFAM coding exons were analysed through single strand conformation analysis and direct sequencing in a cohort of Spanish LOAD-patients and healthy controls. We found four common polymorphisms, two in the flanquing intronic and two in the coding sequences. Polymorphism rs1937 (+35 G/C) was the only missense change (S12T). Genotyping of this polymorphism in 300 LOAD-patients and 183 healthy controls showed a significantly higher frequency of GG-homozygotes in the patients (92% vs. 86%; p=0.04; OR=1.91, 95%CI=1.02-3.50). This suggests that S12 is a risk factor for LOAD in our population. In conclusion, rare variants (mutations) in the TFAM gene were not found in LOAD-patients, but the S12T polymorphism was a moderate risk factor for LOAD in our population.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Polymorphisms in TFAM associate with AD risk in some studies.
“Polymorphisms in other nuclear genes, for example transcription factor A of the mitochondria (TFAM), associate with AD risk in some studies [168-170].”
From The Alzheimer’s disease mitochondrial cascade hypothesis: progress and perspectives (2014) · cites this paper as [168]
Cites
Corder, E. H., Saunders, A. M., Strittmatter, W. J., Schmechel, D. E., Gaskell, P. C., Small, G. W., Roses, A. D., Haines, J. L., & Pericak-Vance, M. A. (1993) · Science · doi:10.1126/science.8346443 · Cited by 9,429 · cited 1× · see citing works
“Although several loci have been involved in LOAD-risk, to date only the apolipoprotein E-ε 4 allele has been clearly established as a genetic risk factor [3,13,16,31,33].”
Strittmatter, W. J., Saunders, A. M., Schmechel, D., Pericak-Vance, M., Enghild, J., Salvesen, G. S., & Roses, A. D. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.5.1977 · Cited by 4,268 · cited 1× · see citing works
“Although several loci have been involved in LOAD-risk, to date only the apolipoprotein E-ε 4 allele has been clearly established as a genetic risk factor [3,13,16,31,33].”
Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database
Bertram, L., McQueen, M. B., Mullin, K., Blacker, D., & Tanzi, R. E. (2007) · Nature Genetics · doi:10.1038/ng1934 · Cited by 1,857 · cited 2× · see citing works
“Other polymorphisms at several genes have been associated with the risk of developing LOAD, but with inconsistent results (see the Alzheimer Research Forum genetic database, http//www.alzgene.org) [7].”
Role of Genes and Environments for Explaining Alzheimer Disease
Gatz, M., Reynolds, C. A., Fratiglioni, L., Johansson, B., Mortimer, J. A., Berg, S., Fiske, A., & Pedersen, N. L. (2006) · Archives of General Psychiatry · doi:10.1001/archpsyc.63.2.168 · Cited by 1,798 · cited 2× · see citing works
“LOAD is likely caused by the interaction between acquired/environmental and genet-ic/inherited risk factors [19,24,34].”
Mitochondrial Respiratory-Chain Diseases
DiMauro, S., & Schon, E. A. (2003) · New England Journal of Medicine · doi:10.1056/nejmra022567 · Cited by 1,650 · cited 1× · see citing works
“Mutations in mtDNA are frequently associated with multisystemic diseases [14].”
Schmechel, D. E., Saunders, A. M., Strittmatter, W. J., Crain, B. J., Hulette, C. M., Joo, S. H., Pericak-Vance, M. A., Goldgaber, D., & Roses, A. D. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.20.9649 · Cited by 1,525 · cited 1× · see citing works
“This mtDNA dysfunction could be enhanced by the formation of amyloid-β deposits, a histopathological hallmark of AD brains [1,2,4,32].”
Mitochondrial transcription factor A regulates mtDNA copy number in mammals
Ekstrand, M. I. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh109 · Cited by 919 · cited 1× · see citing works
“One of these nuclear genes is TFAM , that encodes the mitochondrial transcription factor A [15, ∗ Corresping author: Dr. Eliecer Coto, Gen ´ etica Molecular.”
The genetic epidemiology of neurodegenerative disease
Bertram, L. (2005) · Journal of Clinical Investigation · doi:10.1172/jci24761 · Cited by 680 · cited 1× · see citing works
“Genetically, AD is a complex and heterogeneous disease [8,19,34].”
Abramov, A. Y., Canevari, L., & Duchen, M. R. (2004) · The Journal of Neuroscience · doi:10.1523/jneurosci.4042-03.2004 · Cited by 587 · cited 1× · see citing works
“This mtDNA dysfunction could be enhanced by the formation of amyloid-β deposits, a histopathological hallmark of AD brains [1,2,4,32].”
Anandatheerthavarada, H. K., Biswas, G., Robin, M.-A., & Avadhani, N. G. (2003) · The Journal of Cell Biology · doi:10.1083/jcb.200207030 · Cited by 571 · cited 1× · see citing works
“This mtDNA dysfunction could be enhanced by the formation of amyloid-β deposits, a histopathological hallmark of AD brains [1,2,4,32].”
Mitochondrial transcription factor A (TFAM): Roles in maintenance of mtDNA and cellular functions
Kang, D., Kim, S. H., & Hamasaki, N. (2006) · Mitochondrion · doi:10.1016/j.mito.2006.11.017 · Cited by 450 · see citing works
Susceptibility Locus for Alzheimer's Disease on Chromosome 10
Myers, A., Holmans, P., Marshall, H. N., Kwon, J. M., Meyer, D., Ramic, D., Shears, S., Booth, J., DeVriéze, F. W., Crook, R., et al. (2000) · Science · doi:10.1126/science.290.5500.2304 · Cited by 385 · cited 1× · see citing works
“1, where a locus for LOAD has been mapped, a role for TFAM in LOAD-risk has been proposed [6,9, 23,27].”
Role of mitochondrial dysfunction in Alzheimer's disease
Castellani, R. J., Hirai, K., Aliev, G. M., Drew, K. L., Nunomura, A., Takeda, A., Cash, A., Obrenovich, M. E., Perry, G. L., & Smith, M. A. (2002) · Journal of Neuroscience Research · doi:10.1002/jnr.10389 · Cited by 366 · cited 1× · see citing works
“The brains of AD patients show a reduced metabolism of oxygen and glucose, and this could be linked to a reduced capacity to maintain mitochondrial integrity in these patients [11,20,36].”
A full genome scan for late onset Alzheimer's disease
Kehoe, P. G. (1999) · Human Molecular Genetics · doi:10.1093/hmg/8.2.237 · Cited by 356 · cited 1× · see citing works
“1, where a locus for LOAD has been mapped, a role for TFAM in LOAD-risk has been proposed [6,9, 23,27].”
Mitochondria and degenerative disorders
Orth, M., & Schapira, A. H. V. (2001) · American Journal of Medical Genetics · doi:10.1002/ajmg.1425 · Cited by 278 · cited 1× · see citing works
“There is increasing evidence that impaired mitochondrial function plays a major role in Alzheimer’s (AD) and other neurodegenerative diseases [28].”
Mitochondrial abnormalities and oxidative imbalance in Alzheimer disease
Zhu, X., Perry, G. L., Moreira, P. I., Aliev, G. M., Cash, A., Hirai, K., & Smith, M. A. (2006) · Journal of Alzheimer s Disease · doi:10.3233/jad-2006-9207 · Cited by 196 · cited 1× · see citing works
“The brains of AD patients show a reduced metabolism of oxygen and glucose, and this could be linked to a reduced capacity to maintain mitochondrial integrity in these patients [11,20,36].”
Mitochondrial Transcription Factor A in the Maintenance of Mitochondrial DNA
Kang, D., & Hamasaki, N. (2005) · Annals of the New York Academy of Sciences · doi:10.1196/annals.1338.010 · Cited by 132 · see citing works
Apolipoprotein E ϵ4 and Incidence of Alzheimer Disease in a Community Population of Older Persons
Evans, D. A. (1997) · JAMA · doi:10.1001/jama.1997.03540340056033 · Cited by 102 · cited 1× · see citing works
“Although several loci have been involved in LOAD-risk, to date only the apolipoprotein E-ε 4 allele has been clearly established as a genetic risk factor [3,13,16,31,33].”
Rasmusson, D. X., Brandt, J., Steele, C., Hedreen, J. C., Troncoso, J. C., & Folstein, M. F. (1996) · Alzheimer Disease & Associated Disorders · doi:10.1097/00002093-199601040-00002 · Cited by 93 · cited 1× · see citing works
“The study included 300 patients (191 women, 109 men; mean age 73 ± 8 years; range 60–97 years) who fulfilled the National Institutes of Neurological and Communicative Diseases and Stroke-Alzheimer Disease and Related Disorders (NINCDS-ARDA) criteria for clinical probable AD [25,29].”
Aliev, G. M., Seyidova, D., Neal, M. L., Shi, J., Lamb, B. T., Siedlak, S. L., Vinters, H. V., Head, E., Perry, G. L., LaManna, J. C., et al. (2002) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2002.tb04798.x · Cited by 89 · cited 2× · see citing works
“A rs 2306604 [2].”
Garcı́a-Castro, M., Reguero, J. R., Batalla, A., Molina, B. D., González, P., Álvarez, V., Cortina, A., Cubero, G. I., & Coto, E. (2003) · Clinical Chemistry · doi:10.1373/49.8.1279 · Cited by 64 · cited 1× · see citing works
“In order to define the TFAM -variability in our population, fragments corresponding to the seven TFAM -exons were polymerase chain reaction (PCR) amplified from 50 patients and 100 controls (50 EHC and 50 PC), and subjected to single strand conformation analysis (SSCA) as previously reported [18].”
Self-citationGünther, C., Hadeln, K. V., Müller-Thomsen, T., Alberici, A., Binetti, G., Hock, C., Nitsch, R. M., Stoppe, G., Reiss, J., Gal, A., et al. (2004) · Neuroscience Letters · doi:10.1016/j.neulet.2004.07.070 · Cited by 53 · cited 7× · see citing works
“This is in agreement with the result reported by Gunther et al. [17].”
InfluentialBelin, A. C., Björk, B. F., Westerlund, M., Galter, D., Sydow, O., Lind, C., Pernold, K., Rosvall, L., Håkansson, A., Winblad, B., et al. (2007) · Neuroscience Letters · doi:10.1016/j.neulet.2007.05.010 · Cited by 48 · cited 4× · see citing works
“Considering the published studies that analysed the association between this polymorphism and LOAD, S12 should be at the best a moderate risk factor for LOAD [5,10,17].”
InfluentialTowards compendia of negative genetic association studies: an example for Alzheimer disease
Blomqvist, M. E.-L., Reynolds, C. A., Katzov, H., Feuk, L., Andreasen, N., Bogdanović, N., Blennow, K., Brookes, A. J., & Prince, J. A. (2005) · Human Genetics · doi:10.1007/s00439-005-0078-9 · Cited by 47 · cited 3× · see citing works
“Considering the published studies that analysed the association between this polymorphism and LOAD, S12 should be at the best a moderate risk factor for LOAD [5,10,17].”
Reyes, A., Mezzina, M., & Gadaleta, G. (2002) · Gene · doi:10.1016/s0378-1119(02)00600-5 · Cited by 33 · cited 1× · see citing works
“21,22,30].”
Flagged first, then by citations
8 of the 33 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
The Alzheimer’s disease mitochondrial cascade hypothesis: progress and perspectives
Swerdlow, R. H., Burns, J. M., & Khan, S. M. (2014) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2013.09.010 · Cited by 786 · see citing works
The Alzheimer's disease mitochondrial cascade hypothesis: an update
Swerdlow, R. H., & Khan, S. M. (2009) · Experimental Neurology · doi:10.1016/j.expneurol.2009.01.011 · Cited by 206 · see citing works
“membrane protein, may associate with AD (Gunther et al., 2004; Belin et al., 2007; Alvarez et al., 2008; Bekris et al., 2008).”
BackgroundSwerdlow, R. H. (2011) · Antioxidants and Redox Signaling · doi:10.1089/ars.2011.4149 · Cited by 203 · see citing works
“Apolipoprotein E4 (1-272) fragment is associ-”
BackgroundAhmetov, I. I., Williams, A. G., Викторович, П. Д., Lyubaeva, E. V., Hakimullina, A. M., Fedotovskaya, O. N., Mozhayskaya, I. A., Виноградова, О. Л., Astratenkova, I. V., Montgomery, H., et al. (2009) · Human Genetics · doi:10.1007/s00439-009-0728-4 · Cited by 135 · see citing works
“mation of muscle Wbers and regulation of cardiac hypertrophy (Allen et al. 2001; Poirier et al. 2003; Ekstrand et al. 2004; Yang et al. 2006; Arany et al. 2007; Ling et al. 2007; Alvarez et al. 2008).”
BackgroundHoekstra, J. G., Hipp, M. J., Montine, T. J., & Kennedy, S. R. (2016) · Annals of Neurology · doi:10.1002/ana.24709 · Cited by 103 · see citing works
“Interestingly, deficiencies in replication fidelity and impaired removal of defective mitochondria, have been reported in AD, suggesting a potential origin for the increase in mtDNA mutation load.(20,21) Our findings are in contrast to previous studies in early PD and incidental Lewy body disease that report a large i…”
ResultXu, S., Zhong, M., Zhang, L., Wang, Y., Zhou, Z., Hao, Y., Zhang, W., Yang, X., Wei, A., Pei, L., et al. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07094.x · Cited by 89 · see citing works
Delbarba, A., Abate, G., Prandelli, C., Marziano, M., Buizza, L., Varas, N. A., Novelli, A., Cuetos, F., Martínez, C., Lanni, C., et al. (2016) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2016/5923938 · Cited by 80 · see citing works
“TFAM polymorphism Ser12Thr, that affects its function, was more highly common in the AD patients compared with healthy control groups [54].”
BackgroundWilliams, G. H., Gatt, A. P., Clarke, E. E., Corcoran, J. P. T., Doherty, P., Chambers, D. J., & Ballard, C. G. (2019) · Translational Psychiatry · doi:10.1038/s41398-019-0555-x · Cited by 69 · see citing works
Mitochondrial dysfunction in Alzheimer's disease: Guiding the path to targeted therapies
Percy, K. C. M., Liu, Z., & Qi, X. (2025) · Neurotherapeutics · doi:10.1016/j.neurot.2025.e00525 · Cited by 67 · see citing works
Grabacka, M., Gawin, M., & Pierzchalska, M. (2014) · Pharmaceuticals · doi:10.3390/ph7090913 · Cited by 52 · see citing works
Zhou, T., Thung, K., Liu, M., & Shen, D. G. (2018) · IEEE Transactions on Biomedical Engineering · doi:10.1109/tbme.2018.2824725 · Cited by 52 · see citing works
“of mitochondrial DNA (mtDNA), and lots of mutations in mtDNA have been found in the brains of patients with late-onset Alzheimer’s disease [60].”
Mitochondrial transcription factor A variants and the risk of Parkinson's disease
Gawęda-Walerych, K., Safranow, K., Maruszak, A., Białecka, M. A., Kłodowska-Duda, G. A., Czyźewski, K., Sławek, J. W., Rudzińska, M., Styczyńska, M., Opala, G., et al. (2009) · Neuroscience Letters · doi:10.1016/j.neulet.2009.11.037 · Cited by 50 · see citing works
Non-apolipoprotein E and apolipoprotein E genetics of sporadic Alzheimer's disease
Seripa, D., Panza, F., Franceschi, M., D’Onofrio, G., Solfrizzi, V., Dallapiccola, B., & Pilotto, A. (2009) · Ageing Research Reviews · doi:10.1016/j.arr.2008.12.003 · Cited by 50 · see citing works
Zhang, Q., Yu, J., Wang, P., Chen, W., Wu, Z., Jiang, H. F., & Tan, L. (2010) · Brain Research · doi:10.1016/j.brainres.2010.10.074 · Cited by 37 · see citing works
U-turn DNA bending by human mitochondrial transcription factor A
Rubio‐Cosials, A., & Solà, M. (2013) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2012.12.004 · Cited by 31 · see citing works
Gawęda-Walerych, K., & Żekanowski, C. (2013) · Acta Neurobiologiae Experimentalis · doi:10.55782/ane-2013-1931 · Cited by 30 · see citing works
“However, a few association studies, but none of PD GWAS reports, indicate that the common variants of these genes may modulate the PD risk (Alvarez et al. 2008, Sánchez- Ferrero et al. 2009, Gaweda-Walerych et al. 2010, Clark et al. 2011).”
ResultMontesanto, A., Crocco, P., Anfossi, M., Smirne, N., Puccio, G., Colao, R., Maletta, R., Passarino, G., Bruni, A. C., & Rose, G. (2016) · Journal of Alzheimer s Disease · doi:10.3233/jad-150993 · Cited by 24 · see citing works
“For example, variants of TOMM40 [17], TFAM [18, 19], COX10, and COX15 [20] genes, as well as variations in mitochondrial DNA [21] appear to be linked to variability of the individual risk to develop AD.”
BackgroundAhmetov, I. I., Викторович, П. Д., Missina, S. S., Виноградова, О. Л., & Rogozkin, V. A. (2010) · Human Physiology · doi:10.1134/s0362119710020155 · Cited by 18 · see citing works
Psychotropic Drug Effects on Gene Transcriptomics Relevant to Alzheimer Disease
Lauterbach, E. C. (2011) · Alzheimer Disease & Associated Disorders · doi:10.1097/wad.0b013e318214b7d0 · Cited by 15 · see citing works
“The missense polymorphism S12T has been found to be an AD risk factor in a Spanish population.(42) Thus, reduced expression may promote AD neuropathology.”
BackgroundMitochondrial dysfunction, cause or consequence in neurodegenerative diseases?
Acker, Z. P. V., Leroy, T., & Annaert, W. G. (2024) · BioEssays · doi:10.1002/bies.202400023 · Cited by 17 · see citing works
Gianotti, T. F., Castaño, G. O., Gemma, C., Burgueño, A. L., Rosselli, M. S., Pirola, C. J., & Sookoian, S. C. (2011) · Metabolism · doi:10.1016/j.metabol.2010.12.008 · Cited by 13 · see citing works
Common polygenic variation contributes to risk of migraine in the Norfolk Island population
Rodriguez‐Acevedo, A. J., Ferreira, M. A. R., Benton, M. C., Carless, M. A., Göring, H. H. H., Curran, J. E., Blangero, J., Lea, R. A., & Griffiths, L. R. (2015) · Human Genetics · doi:10.1007/s00439-015-1587-9 · Cited by 10 · see citing works
“Mitochondrial dysfunction can occur as a result of the reduced capacity to produce ATP, and this impairment in energy supply can affect the function of neurons and other cells, increasing the risk for neurological disorders (Alvarez et al. 2008).”
BackgroundLuo, J., Liu, H., Li, D. K. J., Song, B., & Zhang, Y. (2021) · BMC Immunology · doi:10.1186/s12865-021-00464-2 · Cited by 8 · see citing works
Mitochondriogenesis Genes and Extreme Longevity
Santiago, C., Garatachea, N., Yvert, T. P., Rodríguez‐Romo, G., Santos‐Lozano, A., Fiuza‐Luces, C., & Lucía, A. (2012) · Rejuvenation Research · doi:10.1089/rej.2012.1382 · Cited by 5 · see citing works
“…shown an association between rs1937 and neurodegenerative diseases characterized by disturbance of mtDNA integrity and mitochondrial dysfunction, i.e ., late-onset 36–38 or sporadic Alzheimer disease, 39 with the rare CC genotype conferring a protective effect 38 and the GG being a risk genotype.”
InfluentialChen, Q., Li, Z., Song, W.-Q., Yao, Y., Zhang, Y., Zhong, W.-F., Zhang, P., Liu, D., Zhang, X., Huang, Q., et al. (2022) · BMC Geriatrics · doi:10.1186/s12877-021-02655-3 · Cited by 4 · see citing works
“These studies indicated that the rare “CC genotype” of rs1937 was positively associated with late-onset AD [19, 21] while the “GG genotype” was a risk factor for AD [10, 21].”
ResultPolymorphisms of CHAT but not TFAM or VR22 are Associated with Alzheimer Disease Risk
Gao, L., Zhang, Y., Deng, J., Yu, W., & Yu, Y. (2016) · Medical Science Monitor · doi:10.12659/msm.895984 · Cited by 4 · see citing works
Polimorfismos no gene Tfam e características de carcaça em novilhas da raça Nelore
Ayres, D. R. (2008) · Americanae (AECID Library)
- Authors
- Alvarez, V., Corao, A. I., Alonso-Montes, C., Sánchez-Ferrero, E., De Mena, L., Morales, B., García-Castro, M., & Coto, E.
- Affiliations
- Genética Molecular, Hospital Universitario Central de Asturias, Oviedo, Spain
- Hospital Universitario Central de Asturias (ES)
- Venue
- Journal of Alzheimer s Disease
- Publisher
- SAGE Publications
- Published
- 2008-04-14
- Volume
- 13
- Issue
- 3
- Pages
- 275-280
- ISSN
- 1387-2877 (ISSN-L)
- 1875-8908
- OpenAlex
- W71269467
- Cited by
- 27
- References
- 33
- Citations by year
- 2025: 1 · 2024: 1 · 2022: 1 · 2021: 1 · 2019: 1 · 2018: 1 · 2016: 4 · 2015: 1 · 2014: 1 · 2013: 3 · 2012: 1
- FWCI
- 2.48
- Type
- journal article
- Language
- en
- Open access
- green
- hdl.handle.net
- Licence
- cc-by-nc-nd
- Locations
- Journal of Alzheimer s Disease (publishedVersion)
- PubMed (publishedVersion)
- Consultation of the Doctoral Thesis Database (TESEO) (Ministerio de Educación, Cultura y Deporte) (submittedVersion, cc-by-nc-nd)
- Funders
- European Regional Development Fund
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Keywords
- TFAM
- MeSH terms
- Aged, Aged, 80 and over, Alzheimer Disease, Chromosomes, Human, Pair 10, DNA Mutational Analysis, DNA-Binding Proteins, DNA, Mitochondrial, Female, Genotype, Humans, Male, Middle Aged, Polymorphism, Genetic, Risk Factors, Transcription Factors, Genetic Variation, Cohort Studies, Point Mutation, DNA Primers, Mitochondrial Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review