Cited by 629Microbial Metabolic Engineering and BioproductionOptimal Experimental Design MethodsAdvanced Scientific Research Methods

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Strategies for Fermentation Medium Optimization: An In-Depth Review

Open access

Abstract

Optimization of production medium is required to maximize the metabolite yield. This can be achieved by using a wide range of techniques from classical "one-factor-at-a-time" to modern statistical and mathematical techniques, viz. artificial neural network (ANN), genetic algorithm (GA) etc. Every technique comes with its own advantages and disadvantages, and despite drawbacks some techniques are applied to obtain best results. Use of various optimization techniques in combination also provides the desirable results. In this article an attempt has been made to review the currently used media optimization techniques applied during fermentation process of metabolite production. Comparative analysis of the merits and demerits of various conventional as well as modern optimization techniques have been done and logical selection basis for the designing of fermentation medium has been given in the present review. Overall, this review will provide the rationale for the selection of suitable optimization technique for media designing employed during the fermentation process of metabolite production.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3389/fmicb.2016.02087

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The quantity of inorganic salts that must be added to the fermentation medium varies depending on the nutritional requirements of the organism, the composition of the culture medium, and the type of desired end product.

    “The quantity of inorganic salts that must be added to the fermentation medium varies depending on the nutritional requirements of the organism, the composition of the culture medium, and the type of desired end product [51].”

    From Optimization of Bacillus subtilis PW12 biomass production using RSM: a preliminary study towards single-cell protein production for aquaculture (2024) · cites this paper as [51]

    The Phosphate subsection (page not provided) says the amount of phosphate added depends on the broth’s composition, the organism’s needs, and the desired product. The claim extends that statement from phosphate to inorganic salts generally, which the cited passage does not establish. (LLM, conf=0.86)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 76

  1. Adinarayana, 2002, Response surface optimization of the critical medium components for the production of alkaline protease by a newly isolated Bacillus sp, J. Pharm. Pharm. Sci., 5, 272
  2. Aggarwal, 2005, Optimization of machining techniques—a retrospective and literature review, Sadhana, 30, 699, 10.1007/BF02716704 · DOI
  3. Baishan, 2003, Using genetic algorithms coupling neural networks in a study of xylitol production: medium optimization, Process Biochem., 38, 979, 10.1016/S0032-9592(02)00094-8 · DOI
  4. Banga, 2008, Studies on medium optimization for the production of antifungal and antibacterial antibiotics from a bioactive soil actinomycete, Med. Chem. Res., 17, 425, 10.1007/s00044-007-9077-9 · DOI
  5. Banga, 2009, Response surface methodology for optimization of medium components in submerged culture of Aspergillus flavus for enhanced heparinase production, Lett. Appl. Microbiol., 49, 204, 10.1111/j.1472-765X.2009.02640.x · DOI
  6. Baoxin, 2011, Optimization of fermentation medium for enhanced production of milbemycin by a mutant of Streptomyces bingchenggensis BC-X-1 using response surface methodology, Afr. J. Biotech., 10, 7225, 10.5897/AJB11.077 · DOI
  7. Bapat, 2004, Optimization of rifamycin B fermentation in shake flasks via a machine-learning-based approach, Biotechnol. Bioeng., 86, 201, 10.1002/bit.20056 · DOI
  8. Bhagat, 1990, An introduction to neural nets, Chem. Eng. Prog., 86, 55
  9. Box, 1951, On the experimental attainment of optimum conditions, J. R. Stat. Soc. Series. B Stat. Methodol., 13, 1, 10.1111/j.2517-6161.1951.tb00067.x · DOI
  10. Castro, 1992, Application of a statistical design to the optimization of culture medium for recombinant interferon-gamma production by Chinese hamster ovary cells, Appl. Microbiol. Biotechnol., 38, 84, 10.1007/BF00169424 · DOI
  11. Chakravarti, 2002, Optimization of compactin production in chemically defined production medium by Penicillium citrinum using statistical methods, Process Biochem., 38, 481, 10.1016/S0032-9592(02)00138-3 · DOI
  12. Chanin, 1990, Using Taguchi design, regression analysis and simulation to study maintenance float systems, Int. J. Prod. Res., 28, 1939, 10.1080/00207549008942844 · DOI
  13. Cheng, 2014, Aerobic and sequential anaerobic fermentation to produce xylitol and ethanol using non-detoxified acid pretreated corncob, Biotechnol. Biofuels, 7, 166, 10.1186/s13068-014-0166-y · DOI
  14. Desai, 2006, Optimization of fermentation media for exopolysaccharide production from Lactobacillus plantarum using artificial intelligence-based techniques, Process Biochem., 41, 1842, 10.1016/j.procbio.2006.03.037 · DOI
  15. Dubey, 2010, Construction of recombinant Escherichia coli for enhanced bioconversion of colchicine into 3-demethylated colchicine at 70 l bioreactor level, Process Biochem., 45, 1036, 10.1016/j.procbio.2010.03.014 · DOI
  16. Dubey, 2011, Enhanced extraction of 3-demethylated colchicine from fermentation broth of Bacillus megaterium: optimization of process parameters by statistical experimental design, Eng. Sci., 11, 598, 10.1002/elsc.201000207 · DOI
  17. Dubey, 2008, Production of demethylated colchicine through microbial transformation and scale-up process development, Process Biochem., 43, 251, 10.1016/j.procbio.2007.12.002 · DOI
  18. Elibol, 2004, Optimization of medium composition for actinorhodin production by Streptomyces coelicolor A3 (2) with response surface methodology, Process Biochem., 39, 1057, 10.1016/S0032-9592(03)00232-2 · DOI
  19. Fisher, 1992, The arrangement of field experiments, 82, 10.1007/978-1-4612-4380-9_8 · DOI
  20. Foster, 1981, Control of actinomycin D biosynthesis in Streptomyces parvullus: regulation of tryptophan oxygenase activity, J. Bacteriol., 148, 670, 10.1128/JB.148.2.670-677.1981 · DOI
  21. Franco-Lara, 2006, Evaluation of artificial neural networks for modelling and optimization of medium composition with a genetic algorithm, Process Biochem., 41, 2200, 10.1016/j.procbio.2006.06.024 · DOI
  22. Gallo, 1972, Regulation of secondary metabolite biosynthesis: catabolite repression of phenoxazinone synthase and actinomycin formation by glucose, J. Bacteriol., 109, 659, 10.1128/JB.109.2.659-667.1972 · DOI
  23. Ghanem, 2000, Production of Aspergillus terreus xylanase in solid-state cultures: application of the Plackett–Burman experimental design to evaluate nutritional requirements, Bioresour. Technol., 73, 113, 10.1016/S0960-8524(99)00155-8 · DOI
  24. Ghasemi, 2011, Application of response surface methodology and central composite design for the optimisation of supercritical fluid extraction of essential oils from Myrtus communis L, leaves. Food Chem., 126, 1449, 10.1016/j.foodchem.2010.11.135 · DOI
  25. Gonzalez, 1995, Gentamicin formation in Micromonospora purpurea: stimulatory effect of ammonium, J. Antibiot., 48, 479, 10.7164/antibiotics.48.479 · DOI
  26. Gouveia, 2001, Optimization of medium composition for clavulanic acid production by Streptomyces clavuligerus, Biotechnol. Lett., 23, 157, 10.1023/A:1010356231673 · DOI · Paper page
  27. Guo, 2010, Optimization of fermentation medium for nisin production from Lactococcus lactis subsp. lactis using response surface methodology (RSM) combined with artificial neural network-genetic algorithm (ANN-GA), Afr. J. Biotechnol., 9, 6264
  28. Gupta, 2003, A study of oxygen transfer in shake flasks using a non-invasive oxygen sensor, Biotechnol. Bioeng., 84, 351, 10.1002/bit.10740 · DOI
  29. Gupte, 2003, A study of antifungal antibiotic production by Thermomonospora sp MTCC 3340 using full factorial design, J. Chem. Technol. Biotechnol., 78, 605, 10.1002/jctb.818 · DOI
  30. Haaland, 1989, Experimental Design in Biotechnology
  31. Houck, 1995, A Genetic Algorithm for Function Optimization: A Matlab Implementation
  32. Huang, 2014, Anaerobic/aerobic conditions and biostimulation for enhanced chlorophenols degradation in biocathode microbial fuel cells, Biodegradation, 25, 615, 10.1007/s10532-014-9686-1 · DOI
  33. Kennedy, 1999, Strategies for improving fermentation medium performance: a review, J. Ind. Microbiol. Biotechnol., 23, 456, 10.1038/sj.jim.2900755 · DOI
  34. Kennedy, 1994, The scale up of mycelial shake flask fermentations: a case study of gamma linolenic acid production byMucor hiemalis IRL 51, J. Ind. Microbiol., 13, 212, 10.1007/BF01569750 · DOI
  35. Keskin Gündoǧdu, 2016, Experimental design methods for bioengineering applications, Crit. Rev. Biotechnol., 36, 368, 10.3109/07388551.2014.973014 · DOI
  36. Khan, 2011, Optimization of fermentation parameters for maximization of actinomycin D production, J. Chem. Pharma. Res., 3, 281
  37. Khan, 2011, Maximizing the native concentration and shelf life of protein: a multiobjective optimization to reduce aggregation, Appl. Microbiol. Biotechnol., 89, 99, 10.1007/s00253-010-2835-5 · DOI
  38. Lebrihi, 1992, Effect of ammonium ions on spiramycin biosynthesis in Streptomyces ambofaciens, Appl. Microbiol. Biotechnol., 37, 382, 10.1007/BF00210997 · DOI
  39. Lin, 1994, Leucine interference in the production of water-soluble red Monascus pigments, Arch. Microbiol., 162, 114, 10.1007/BF00264383 · DOI
  40. Mao, 2007, Optimizing the medium compositions for accumulation of the novel FR-008/Candicidin derivatives CS101 by a mutant of Streptomyces sp. using statistical experimental methods, Process Biochem., 42, 878, 10.1016/j.procbio.2007.01.004 · DOI
  41. Marwick, 1999, Bioprocess intensification for production of novel marine bacterial antibiotics through bioreactor operation and design, Mar. Biotechnol., 1, 495, 10.1007/PL00011806 · DOI
  42. McCord-Nelson, 1991, A Practical Guide to Neural Nets
  43. Muhammad, 2014, Taguchi's experimental design for optimizing the production of novel thermostable polypeptide antibiotic from Geobacillus pallidus SAT4, Pak. J. Pharma. Sci., 27, 11
  44. Niwas, 2013, Production, purification and characterization of the cholesterol oxidase from newly isolated Streptomyces sp, W. J. Micobiol. Biotechnol., 29, 2077, 10.1007/s11274-013-1371-8 · DOI
  45. O'Kennedy, 2003, Effects of fermentation strategy on the characteristics of plasmid DNA production, Biotechnol. Appl. Biochem., 37, 83, 10.1042/BA20020099 · DOI
  46. Osama, 2013, Modelling of nutrient mist reactor for hairy root growth using Artificial neural network, Eur. J. Sci. Res., 97, 516
  47. Ozcengiz, 1990, Regulation of biosynthesis of bacilysin by Bacillus subtilis, J. Ind. Microbiol., 6, 91, 10.1007/BF01576428 · DOI
  48. Pignatiello, 1988, An overview of the strategy and tactics of Taguchi, IIE Trans., 20, 247, 10.1080/07408178808966177 · DOI
  49. Poirier, 1981, Arginine regulation of gramicidin S biosynthesis, Antimicrob. Agents Chemother., 20, 508, 10.1128/AAC.20.4.508 · DOI
  50. Praveen, 2008, Nutritional regulation of actinomycin-D production by a new isolate of Streptomyces sindenensis using statistical methods, Ind. J. Exp. Biol., 46, 139
  51. Rajeswari, 2014, Characterization of saltern based Streptomyces sp. and statistical media optimization for its improved antibacterial activity, Front. Microbiol., 5, 753, 10.3389/fmicb.2014.00753 · DOI
  52. Reddy, 1999, Production of thermostable β-amylase and pullulanase by Clostridium thermosulfurogenes SV2 in solid-state fermentation: screening of nutrients using Plackett-Burman design, Bioprocess. Eng., 21, 175, 10.1007/pl00009069 · DOI
  53. Rokem, 2007, Systems biology of antibiotic production by microorganisms, Nat. Prod. Rep., 24, 1262, 10.1039/b617765b · DOI
  54. Sánchez, 2010, Carbon source regulation of antibiotic production, J. Antibiot., 63, 442, 10.1038/ja.2010.78 · DOI
  55. Sanchez, 2002, Metabolic regulation of fermentation processes, Enzyme Microb. Technol., 31, 895, 10.1016/S0141-0229(02)00172-2 · DOI
  56. Shih, 2002, Application of statistical experimental methods to optimize production of poly (γ-glutamic acid) by Bacillus licheniformis CCRC 12826, Enzyme Microb. Technol., 31, 213, 10.1016/S0141-0229(02)00103-5 · DOI
  57. Silveira, 1991, Medium optimization by an orthogonal array design for the growth of Methanosarcina barkeri, J. Ferment. Bioeng., 72, 20, 10.1016/0922-338X(91)90140-C · DOI
  58. Singer, 2009, Nelder-mead algorithm, Scholarpedia, 4, 2928, 10.4249/scholarpedia.2928 · DOI
  59. Singh, 2012, Optimization of cultural parameters for antifungal and antibacterial metabolite from microbial isolate; Streptomyces rimosus MTCC 10792 from soil of Chhattisgarh, Int. J. Phar. Pharm. Sci., 4, 94
  60. Singh, 2012, Production and optimisation of oxytetracycline by a new isolate Streptomyces rimosus using response surface methodology, Med. Chem. Res., 21, 3140, 10.1007/s00044-011-9845-4 · DOI
  61. Singh, 2009, Optimization of actinomycin V production by Streptomyces triostinicus using artificial neural network and genetic algorithm, Appl. Microbiol. Biotechnol., 82, 379, 10.1007/s00253-008-1828-0 · DOI
  62. Singh, 2008, Production and statistical optimization of a novel olivanic acid by Streptomyces olivaceus MTCC 6820, Pro. Biochem., 43, 1313, 10.1016/j.procbio.2008.07.015 · DOI
  63. Singh, 2008, Production, optimization and purification of an antifungal compound from Streptomyces capoamus MTCC 8123, Med. Chem. Res., 17, 94, 10.1007/s00044-007-9040-9 · DOI
  64. Sujatha, 2005, Studies on a new marine streptomycete BT-408 producing polyketide antibiotic SBR-22 effective against methicillin resistant Staphylococcus aureus, Microbiol. Res., 160, 119, 10.1016/j.micres.2004.10.006 · DOI
  65. Teruel, 1997, Response surface analysis of chlortetracycline and tetracycline production with K-carrageenan immobilized Streptomyces aureofaciens, Enzyme Microb. Technol., 21, 314, 10.1016/S0141-0229(97)00045-8 · DOI
  66. Theobald, 2000, Microbial growth and production kinetics of Streptomyces antibioticus Tü 6040, Antonie Van Leeuwenhoek., 78, 307, 10.1023/A:1010282818272 · DOI
  67. Tripathi, 2012, Enhanced antibiotic production by Streptomyces sindenensis using artificial neural networks coupled with genetic algorithm and nelder-mead downhill simplex, J. Microbiol. Biotechnol., 22, 939, 10.4014/jmb.1109.09018 · DOI
  68. Tripathi, 2004, Production of antibacterial and antifungal metabolites by Streptomyces violaceusniger and media optimization studies for the maximum metabolite production, Med. Chem. Res., 13, 790, 10.1007/s00044-004-0118-3 · DOI
  69. Vaidya, 2003, Statistical optimization of medium components for the production of chitinase by Alcaligenes xylosoxydans, Enzyme Microb. Technol., 33, 92, 10.1016/S0141-0229(03)00100-5 · DOI
  70. Vastrad, 2011, Production and optimization of tetracycline by various strains of Streptomyces under solid state fermentation using pineapple peel as a novel substrate, Rec. Res. Sci. Technol., 3, 1
  71. Wang, 2005, Optimization for the production of water-soluble polysaccharide from Pleurotus citrinopileatus in submerged culture and its antitumor effect, Appl. Microbiol. Biotechnol., 67, 759, 10.1007/s00253-004-1833-x · DOI
  72. Wang, 2011, Improvement of antibiotic activity of Xenorhabdus bovienii by medium optimization using response surface methodology, Microb. Cell Fact., 10, 1, 10.1186/1475-2859-10-98 · DOI
  73. Xiaobo, 2006, Medium optimization of carbon and nitrogen sources for the production of eucalyptene A and xyloketal A from Xylaria sp. 2508 using response surface methodology, Process Biochem., 41, 293, 10.1016/j.procbio.2005.06.002 · DOI
  74. Zhang, 2007, Application of response surface methodology in medium optimization for pyruvic acid production of Torulopsis glabrata TP19 in batch fermentation, J. Zhejiang Univ. Sci. B., 8, 98, 10.1631/jzus.2007.B0098 · DOI
  75. Zhong, 2014, Optimization of Bacillus subtilis cell growth effecting jiean-peptide production in fed batch fermentation using central composite design, Electron. J. Biotechnol., 17, 132, 10.1016/j.ejbt.2014.04.010 · DOI
  76. Zhu, 2007, Statistical optimization of medium components for avilamycin production by Streptomyces viridochromogenes Tü57-1 using response surface methodology, J. Ind. Microbiol. Biotechnol., 34, 271, 10.1007/s10295-006-0195-z · DOI

Cited by

Sorted by citations

Metadata

Authors
Singh, V., Haque, S., Niwas, R., Srivastava, A., Pasupuleti, M., & Tripathi, C. K. M.
Affiliations
  • Central Drug Research Institute (IN)
  • Jamia Millia Islamia (IN)
Corresponding author
Tripathi, C. K. M.
Venue
Frontiers in Microbiology
Published
2017-01-06
Volume
7
Pages
2087-2087
ISSN
1664-302X (ISSN-L)
OpenAlex
W2570879358
Cited by
629
References
1
Citations by year
2026: 64 · 2025: 113 · 2024: 90 · 2023: 77 · 2022: 88 · 2021: 69 · 2020: 57 · 2019: 39 · 2018: 26 · 2017: 4
FWCI
3.23
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Frontiers in Microbiology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
Department of Science and Technology, Ministry of Science and Technology (SR/FT/LS-190/2009)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
  • Social Sciences › Decision Sciences › Management Science and Operations Research › Optimal Experimental Design Methods
  • Life Sciences › Agricultural and Biological Sciences › Food Science › Advanced Scientific Research Methods
Keywords
fermentation medium optimization, metabolite production, one-factor-at-a-time method, artificial neural networks, genetic algorithm, hybrid optimization

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review