Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future

Huws, Sharon A., Creevey, Christopher J., Oyama, Linda B., Mizrahi, Itzhak, Denman, Stuart E., Popova, Milka, Muñoz-Tamayo, Rafael, Forano, Evelyne +29 more·2018·Frontiers in Microbiology

Cited by (504)

Items 401–500 of 504

  1. Development of a Methane Emission Reduction Technique for Dairy Cattle Using Soil Microorganisms: A Small-Scale Pilot Trial
    Kazuhide Adachi, Kiyotaka Murakami, Kenji Kawashima, Keiho Murakami, Yasuhiro Tsukamoto · 2025 · Agricultural Sciences
  2. Comparative Metagenomics of Soda Lakes and the Rumen Reveals Novel Microbial Lineages and Carbohydrate-active Enzyme Diversity
    Oliyad Jeilu Oumer, Addis Simachew, Erica Marie Hartmann, Erik Alexandersson, Eva Johansson · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  3. Meat Animal Biologics Discovery from the Rumen Microbiome: Application of Genomics
    Fiorella L Viquez-Umana, Chamia C. Chatman, Elena G. Olson, Erica L.-W. Majumder, Pedro Marcus Pereira Vidigal, Steven C. Ricke, Hilario C. Mantovani · 2025 · Meat and Muscle Biology
  4. Biphasic effects of Callicarpa nudiflora water extract on rumen fermentation in vitro and microbial communities in sheep
    Wanqin Yang, Runhang Li, Wenxi Wang, Kunna Li, Yiying Huang, Ying Ying, Yuning Liu, Hongxin Wu · 2025 · Frontiers in Animal Science
  5. A meta-analysis establishes bromoform dose and forage-based models to evaluate the antimethanogenic effects of Asparagopsis spp. feed additive
    Claire Goloja, Nora Povejsil, Breanna Michell Roque, Alexia Akbay, Mallory C. Honan · 2025 · Research Square
  6. Anaerobic gut fungi Caecomyces communis, Neocallimastix frontalis and Piromyces spp. nov. , have distinct effects on plant fibres during digestion
    Shuqi Shen, Jessica L. Matthews, Siwei Li, Jolanda M. van Munster · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  7. Additional file 6 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  8. Additional file 2 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  9. Additional file 1 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  10. Additional file 8 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  11. Additional file 5 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Lei Zhang · 2022 · Figshare
  12. Additional file 7 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  13. Additional file 12 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  14. Additional file 13 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  15. Additional file 1 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  16. Additional file 3 of Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes
    Taiwo, Godstime, Olanrewaju B. Morenikeji, Modoluwamu D. Idowu, Taylor S Sidney, Adekunle O Ajiboye, Cervantes, Andres Pech, Peters, Sunday, Ibukun Michael Ogunade · 2024 · Figshare
  17. Additional file 7 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  18. Additional file 1 of Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes
    Taiwo, Godstime, Olanrewaju B. Morenikeji, Modoluwamu D. Idowu, Taylor S Sidney, Adekunle O Ajiboye, Cervantes, Andres Pech, Peters, Sunday, Ibukun Michael Ogunade · 2024 · Figshare
  19. Additional file 2 of Potential roles of the rectum keystone microbiota in modulating the microbial community and growth performance in goat model
    Wang, Dangdang, Guangfu Tang, Lichao Zhao, M. Y. Wang, Chen, Luyu, Congcong Zhao, Liang, Ziqi, Chen, Jie, Cao, Yangchun, Yao, Junhu · 2024 · Figshare
  20. Additional file 3 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  21. Additional file 1 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  22. Additional file 2 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  23. Additional file 11 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  24. Additional file 6 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  25. Additional file 5 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  26. Additional file 1 of A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
    Wu, Yingjian, Gao, Na, Sun, Chuqing, Feng, Tong, Liu, Qingyou, Chen, Wei-Hua · 2024 · Figshare
  27. Additional file 5 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  28. Additional file 2 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  29. Additional file 7 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  30. Additional file 12 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  31. Additional file 4 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  32. Additional file 2 of A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
    Wu, Yingjian, Gao, Na, Sun, Chuqing, Tong Feng, Liu, Qingyou, Chen, Wei-Hua · 2024 · Figshare
  33. Additional file 11 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  34. Additional file 13 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  35. Additional file 3 of Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria
    Leeann Klassen, Greta Reintjes, Jeffrey P. Tingley, Darryl R. Jones, Jan‐Hendrik Hehemann, Smith, Adam D., Timothy Damian Schwinghamer, Carol Arnosti, Jin, Long, Alexander, Trevor W. et al. · 2021 · Figshare
  36. Additional file 9 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  37. Additional file 3 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  38. Additional file 2 of Characterization of rumen microbiome and immune genes expression of crossbred beef steers with divergent residual feed intake phenotypes
    Taiwo, Godstime, Olanrewaju B. Morenikeji, Modoluwamu D. Idowu, Taylor S Sidney, Adekunle O Ajiboye, Cervantes, Andres Pech, Peters, Sunday, Ibukun Michael Ogunade · 2024 · Figshare
  39. Additional file 1 of Opportunities and limits of combining microbiome and genome data for complex trait prediction
    Miguel Pérez-enciso A, Laura M. Zingaretti, Yuliaxis Ramayo‐Caldas, de los Campos, Gustavo · 2021 · Figshare
  40. Additional file 3 of Low-cost sample preservation methods for high-throughput processing of rumen microbiomes
    Juliana Cristina de Castro Budel, Hess, Melanie K., Bilton, Timothy, Hannah Henry, Dodds, Ken G., Janssen, Peter H., John Colin McEwan, Rowe, Suzanne J. · 2022 · Figshare
  41. Additional file 9 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  42. Additional file 10 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  43. Additional file 11 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  44. Additional file 9 of Exploring AI-2-mediated interspecies communications within rumen microbial communities
    Liu, Xiaozhen, Qinmeng Liu, Sihuai Sun, Hengxi Sun, Wang, Yao, Shen, Xihui, Zhang, Lei · 2022 · Figshare
  45. Additional file 2 of Quantifying fluorescent glycan uptake to elucidate strain-level variability in foraging behaviors of rumen bacteria
    Leeann Klassen, Greta Reintjes, Jeffrey P. Tingley, Darryl R. Jones, Jan‐Hendrik Hehemann, Smith, Adam D., Timothy Damian Schwinghamer, Carol Arnosti, Jin, Long, Alexander, Trevor W. et al. · 2021 · Figshare
  46. Additional file 1 of Potential roles of the rectum keystone microbiota in modulating the microbial community and growth performance in goat model
    Wang, Dangdang, Guangfu Tang, Lichao Zhao, M. Y. Wang, Chen, Luyu, Congcong Zhao, Liang, Ziqi, Chen, Jie, Cao, Yangchun, Yao, Junhu · 2024 · Figshare
  47. Additional file 12 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  48. Additional file 10 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  49. Additional file 1 of High-energy diet modify rumen microbial composition and microbial energy metabolism pattern in fattening sheep
    Ge, Ting, Yang, Chen, Li, Bo, Xiaoyu Huang, Leiyun Zhao, Zhang, Xiaoqiang, Lintao Tian, Enping Zhang · 2023 · Figshare
  50. Additional file 3 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  51. Additional file 7 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  52. Additional file 8 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  53. Additional file 1 of Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
    Yan, Ming, Yu, Zhongtang · 2024 · Figshare
  54. Additional file 4 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  55. Additional file 6 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  56. Additional file 1 of Inoculation with rumen fluid in early life accelerates the rumen microbial development and favours the weaning process in goats
    Juan Manuel Palma‐Hidalgo, Elisabeth Jiménez, Popova, Milka, Diego Pablo Morgavi, Antonio Ignacio Martín-García, Yáñez-Ruiz, David Rafael, Alejandro Belanche · 2021 · Figshare
  57. Additional file 8 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  58. Additional file 4 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  59. Additional file 2 of Excretory-secretory products from the brown stomach worm, Teladorsagia circumcincta, exert antimicrobial activity in in vitro growth assays
    James Rooney, Williams, Timothy L., Holly M. Northcote, Fiona E. Karet, Daniel R. G. Price, Alasdair J. Nisbet, Russell M. Morphew, Cinzia Cantacessi · 2022 · Figshare
  60. Additional file 5 of Microbiota members from body sites of dairy cows are largely shared within individual hosts throughout lactation but sharing is limited in the herd
    Mahendra Mariadassou, Laurent‐Xavier Nouvel, Fabienne Constant, Diego Pablo Morgavi, Rault, Lucie, Sarah Barbey, Emmanuelle Helloin, Rué, Olivier, Schbath, Sophie, Frédéric Launay et al. · 2024 · Figshare
  61. Additional file 6 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, J. C. B. Plaizier, Khafipour, Ehsan · 2024 · Figshare
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