The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
Open accessAbstract
Structural biology aims at characterizing the structural and dynamic properties of biological macromolecules at atomic details. Gaining insight into three dimensional structures of biomolecules and their interactions is critical for understanding the vast majority of cellular processes, with direct applications in health and food sciences. Since 2010, the WeNMR project (www.wenmr.eu) has implemented numerous web-based services to facilitate the use of advanced computational tools by researchers in the field, using the high throughput computing infrastructure provided by EGI. These services have been further developed in subsequent initiatives under H2020 projects and are now operating as Thematic Services in the European Open Science Cloud portal (www.eosc-portal.eu), sending >12 millions of jobs and using around 4,000 CPU-years per year. Here we review 10 years of successful e-infrastructure solutions serving a large worldwide community of over 23,000 users to date, providing them with user-friendly, web-based solutions that run complex workflows in structural biology. The current set of active WeNMR portals are described, together with the complex backend machinery that allows distributed computing resources to be harvested efficiently.
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Cites
HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information
Dominguez, C., Boelens, R., & Bonvin, A. M. J. J. (2003) · Journal of the American Chemical Society · doi:10.1021/ja026939x · Cited by 3,187
Self-citationAnnouncing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
Prediction of site-specific interactions in antibody–antigen complexes: the proABC method and server
Olimpieri, P. P., Chailyan, A., Tramontano, A., & Marcatili, P. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt369 · Cited by 90
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Lichtblau, D. M., Schwarz, B., Baby, D., Endres, C., Sieberg, C., & Bauer, P. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.930049 · Cited by 43
Toxoplasma Gondii Importin α Shows Weak Auto-Inhibition
Bhambid, M., Dey, V., Walunj, S., & Patankar, S. (2023) · The Protein Journal · doi:10.1007/s10930-023-10128-2 · Cited by 5
Konuma, T., Takai, T., Tsuchiya, C., Nishida, M., Hashiba, M., Yamada, Y., Shirai, H., Motoda, Y., Nagadoi, A., Chikaishi, E., et al. (2024) · Protein Science · doi:10.1002/pro.5002 · Cited by 1
Extracellular adenosine deamination primes tip organizer development in Dictyostelium
Hathi, P., & Ramamurthy, B. (2025) · eLife · doi:10.7554/elife.104855 · Cited by 1
Metadata
- Authors
- Honorato, R. V., Koukos, P. I., Jiménez-García, B., Tsaregorodtsev, A., Verlato, M., Giachetti, A., Rosato, A., & Bonvin, A. M. J. J.
- Venue
- Frontiers in Molecular Biosciences
- Publisher
- Frontiers Media SA
- Published
- 2021-07-28
- Volume
- 8
- ISSN
- 2296-889X
- OpenAlex
- W3185197558
- Cited by
- 774
- References
- 3
- FWCI
- 100.60
- Type
- journal article
- Language
- en
- Open access
- green
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