Rhizosphere Engineering With Plant Growth-Promoting Microorganisms for Agriculture and Ecological Sustainability
Open accessAbstract
The rhizosphere is undoubtedly the most complex microhabitat, comprised of an integrated network of plant roots, soil, and a diverse consortium of bacteria, fungi, eukaryotes, and archaea. The rhizosphere conditions have a direct impact on crop growth and yield. Nutrient-rich rhizosphere environments stimulate plant growth and yield and vice versa. Extensive cultivation exhaust most of the soils which need to be nurtured before or during the next crop. Chemical fertilizers are the major source of crop nutrients but their uncontrolled and widespread usage has posed a serious threat to the sustainability of agriculture and stability of an ecosystem. These chemicals are accumulated in the soil, drained in water, and emitted to the air where they persist for decades causing a serious threat to the overall ecosystem. Plant growth-promoting rhizobacteria (PGPR) present in the rhizosphere convert many plant-unavailable essential nutrients e.g., nitrogen, phosphorous, zinc, etc. into available forms. PGPR produces certain plant growth hormones (such as auxin, cytokinin, and gibberellin), cell lytic enzymes (chitinase, protease, hydrolases, etc.), secondary metabolites, and antibiotics, and stress alleviating compounds (e.g., 1-Aminocyclopropane-1- carboxylate deaminase), chelating agents (siderophores), and some signaling compounds (e.g., N-Acyl homoserine lactones) to interact with the beneficial or pathogenic counterparts in the rhizosphere. These multifarious activities of PGPR improve the soil structure, health, fertility, and functioning which directly or indirectly support plant growth under normal and stressed environments. Rhizosphere engineering with these PGPR has a wide-ranging application not only for crop fertilization but developing eco-friendly sustainable agriculture. Due to severe climate change effects on plants and rhizosphere biology, there is growing interest in stress-resilient PGPM and their subsequent application to induce stress (drought, salinity, and heat) tolerance mechanism in plants. This review describes the three components of rhizosphere engineering with an explicit focus on the broader perspective of PGPM that could facilitate rhizosphere engineering in selected hosts to serve as an efficient component for sustainable agriculture.
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Cites
Restoring Soil Quality to Mitigate Soil Degradation
Lal, R. (2015) · Sustainability · doi:10.3390/su7055875 · Cited by 2,109 · see citing works
Chemistry and biology of siderophores
Hider, R. C., & Kong, X. (2010) · Natural Product Reports · doi:10.1039/b906679a · Cited by 1,722 · see citing works
Bacterial siderophores in community and host interactions
Kramer, J., Özkaya, Ö., & Kümmerli, R. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0284-4 · Cited by 998 · see citing works
Breast cancer in postmenopausal women is associated with an altered gut metagenome
Zhu, J., Liao, M., Yao, Z., Liang, W., Li, Q., Liu, J., Yang, H., Ji, Y., Wei, W., Tan, A., et al. (2018) · Microbiome · doi:10.1186/s40168-018-0515-3 · Cited by 377 · see citing works
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Research works printed but not linked: 228
- Abbas, R., Rasul, S., Aslam, K., Baber, M., Shahid, M., Mubeen, F., et al. (2019). Halotolerant PGPR: a hope for cultivation of saline soils. J. King Saud Univ. Sci. 31, 1195-1201. doi: 10.1016/j.jksus.2019.02.019 · DOI
- Abd El-Daim, I. A., Bejai, S., and Meijer, J. (2014). Improved heat stress tolerance of wheat seedlings by bacterial seed treatment. Plant Soil 379, 337-350. doi: 10.1007/s11104-014-2063-3 · DOI
- Adesemoye, A., and Egamberdieva, D. (2013). "Beneficial effects of plant growth-promoting rhizobacteria on improved crop production: prospects for developing economies, " in Bacteria in Agrobiology: Crop Productivity, eds D. Maheshwari, M. Saraf, and A. Aeron (Berlin: Springer), 45-63. doi: 10.1007/978-3-642-37241-4_2 · DOI
- Ahemad, M., and Kibret, M. (2014). Mechanisms and applications of plant growth promoting rhizobacteria: current perspective. J. King Saud Univ. Sci. 26, 1-20. doi: 10.1016/j.jksus.2013.05.001 · DOI
- Ahkami, A. H., White Iii, R. A., Handakumbura, P. P., and Jansson, C. (2017). Rhizosphere engineering: enhancing sustainable plant ecosystem productivity. Rhizosphere 3, 233-243. doi: 10.1016/j.rhisph.2017.04.012 · DOI
- Ahmad, M., Zahir, Z. A., Asghar, H. N., and Arshad, M. (2012). The combined application of rhizobial strains and plant growth promoting rhizobacteria improves growth and productivity of mung bean (Vigna radiata L.) under salt-stressed conditions. Ann. Microbiol. 62, 1321-1330. doi: 10.1007/s13213-011-0380-9 · DOI
- Ali, S., Hameed, S., Imran, A., Iqbal, M., and Lazarovits, G. (2014). Genetic, physiological and biochemical characterization of Bacillus sp. strain RMB7 exhibiting plant growth promoting and broad spectrum antifungal activities. Microb. Cell Fact. 13:144. doi: 10.1186/PREACCEPT-6657919731258908 · DOI
- Ali, S., Hameed, S., Shahid, M., Iqbal, M., Lazarovits, G., and Imran, A. (2020). Functional characterization of potential PGPR exhibiting broad-spectrum antifungal activity. Microbiol. Res. 232:126389. doi: 10.1016/j.micres.2019.126389 · DOI
- Ali, S. Z., Sandhya, V., Grover, M., Kishore, N., Rao, L. V., and Venkateswarlu, B. (2009). Pseudomonas sp. strain AKM-P6 enhances tolerance of sorghum seedlings to elevated temperatures. Biol. Fertil. Soils 46, 45-55. doi: 10.1007/s00374-009-0404-9 · DOI
- Ali, S. Z., Sandhya, V., Grover, M., Linga, V. R., and Bandi, V. (2011). Effect of inoculation with a thermotolerant plant growth promoting Pseudomonas putida strain AKMP7 on growth of wheat (Triticum spp.) under heat stress. J. Plant Interact. 6, 239-246. doi: 10.1080/17429145.2010.545147 · DOI
- Alori, E. T., Glick, B. R., and Babalola, O. O. (2017). Microbial phosphorus solubilization and its potential for use in sustainable agriculture. Front. Microbiol. 8:971. doi: 10.3389/fmicb.2017.00971 · DOI
- Al-Zahrani, H. S. M., Elbeshehy, E. K. F., Aldhebiani, A. Y., and Elbeaino, T. (2018). Effect of Cucumber mosaic virus (CMV) infection on antineoplastic alkaloids from periwinkle (Catharanthus roseus L.) cultured in the Mecca region and resistance induction by plant-growth- promoting rhizobacteria (PGPR). Biotechnol. Biotechnol. Equip. 32, 49-57. doi: 10.1080/13102818.2017.1395298 · DOI
- Andrews, M., and Andrews, M. E. (2017). Specificity in legume- rhizobia symbioses. Int. J. Mol. Sci. 18:705. doi: 10.3390/ijms180 40705 · DOI
- Arif, M. S., Muhammad, R., Shahzad, S. M., Yasmeen, T., Shafaqat, A., and Akhtar, M. J. (2017). Phosphorus-mobilizing rhizobacterial strain Bacillus cereus GS6 improves symbiotic efficiency of soybean on an Aridisol amended with phosphorus-enriched compost. Pedosphere 27, 1049-1061. doi: 10.1016/S1002-0160(17)60366-7 · DOI
- Asari, S., Tarkowská, D., Rolčík, J., Novák, O., Palmero, D. V., Bejai, S., et al. (2017). Analysis of plant growth-promoting properties of Bacillus amyloliquefaciens UCMB5113 using Arabidopsis thaliana as host plant. Planta 245, 15-30. doi: 10.1007/s00425-016-2580-9 · DOI
- Asghari, B., Khademian, R., and Sedaghati, B. (2020). Plant growth promoting rhizobacteria (PGPR) confer drought resistance and stimulate biosynthesis of secondary metabolites in pennyroyal (Mentha pulegium L.) under water shortage condition. Sci. Hortic. 263:109132. doi: 10.1016/j.scienta.2019.109132 · DOI
- Atzorn, R., Crozier, A., Wheeler, C., and Sandberg, G. (1988). Production of gibberellins and indole-3-acetic acid by Rhizobium phaseoli in relation to nodulation of Phaseolus vulgaris roots. Planta 175, 532-538. doi: 10.1007/BF00393076 · DOI
- Aw, X., Li, Z., Wc, L., and Zh, Y. (2019). The effect of plant growth- promoting rhizobacteria (PGPR) on arsenic accumulation and the growth of rice plants (Oryza sativa L.). Chemosphere 242:125136. doi: 10.1016/j.chemosphere.2019.125136 · DOI
- Awan, H. A., Imran, A., Zaheer, A., Mirza, S., and Malik, K. A. (2011). "Microbial diversity and molecular signals controlling plant-microbe interaction in the rhizosphere of grasses including wheat, " in Proceedings of the Plant Growth- Promoting Rhizobacteria for Sustainable Agriculture, eds M. Reddy, Q. Wang, (Beijing: Asian PGPR), 210. Available online at: http://asianpgpr.com/second- asian-pgpr-conference.php
- Azeem, M., Riaz, A., Chaudhary, A. N., Hayat, R., Hussain, Q., Tahir, M. I., et al. (2015). Microbial phytase activity and their role in organic P mineralization. Arch. Agron. Soil Sci. 61, 751-766. doi: 10.1080/03650340.2014.963796 · DOI
- Beeckman, F., Motte, H., and Beeckman, T. (2018). Nitrification in agricultural soils: impact, actors and mitigation. Curr. Opin. Biotechnol. 50, 166-173. doi: 10.1016/j.copbio.2018.01.014 · DOI
- Behera, B., Yadav, H., Singh, S., Mishra, R., Sethi, B., Dutta, S., et al. (2017). Phosphate solubilization and acid phosphatase activity of Serratia sp. isolated from mangrove soil of Mahanadi river delta, Odisha, India. J. Genet. Eng. Biotechnol. 15, 169-178. doi: 10.1016/j.jgeb.2017.01.003 · DOI
- Berendsen, R. L., Vismans, G., Yu, K., Song, Y., De Jonge, R., Burgman, W. P., et al. (2018). Disease-induced assemblage of a plant-beneficial bacterial consortium. ISME J. 12, 1496-1507. doi: 10.1038/s41396-018-0093-1 · DOI
- Bhattacharyya, P. N., and Jha, D. K. (2012). Plant growth-promoting rhizobacteria (PGPR): emergence in agriculture. World J. Microb. Biot. 28, 1327-1350. doi: 10.1007/s11274-011-0979-9 · DOI
- Bianco, C., and Defez, R. (2010). Improvement of phosphate solubilization and Medicago plant yield by an indole-3-acetic acid-overproducing strain of Sinorhizobium meliloti. Appl. Environ. Microbiol. 76, 4626-4632. doi: 10.1128/AEM.02756-09 · DOI
- Bibi, N., Hamayun, M., Khan, S. A., Iqbal, A., Islam, B., Shah, F., et al. (2018). Anthracene biodegradation capacity of newly isolated rhizospheric bacteria Bacillus cereus S13. PLoS ONE 13:e0201620. doi: 10.1371/journal.pone.0201620 · DOI
- Binenbaum, J., Weinstain, R., and Shani, E. (2018). Gibberellin localization and transport in plants. Trends Plant Sci. 23, 410-421. doi: 10.1016/j.tplants.2018.02.005 · DOI
- Bjarnsholt, T., Van Gennip, M., Jakobsen, T. H., Christensen, L. D., Jensen, P. Ø., and Givskov, M. (2010). In vitro screens for quorum sensing inhibitors and in vivo confirmation of their effect. Nat. Protoc. 5:282. doi: 10.1038/nprot.2009.205 · DOI
- Budi, S., Van Tuinen, D., Arnould, C., Dumas-Gaudot, E., Gianinazzi- Pearson, V., and Gianinazzi, S. (2000). Hydrolytic enzyme activity of Paenibacillus sp. strain B2 and effects of the antagonistic bacterium on cell integrity of two soil-borne pathogenic fungi. Appl. Soil Ecol. 15, 191-199. doi: 10.1016/S0929-1393(00)00095-0 · DOI
- Bukhat, S., Imran, A., Javaid, S., Shahid, M., Majeed, A., and Naqqash, T. (2020). Communication of plants with microbial world: exploring the regulatory networks for PGPR mediated defense signaling. Microbiol. Res. 238:126486. doi: 10.1016/j.micres.2020.126486 · DOI
- Cabeza, R. A., Steingrobe, B., and Claassen, N. (2019). Phosphorus fractionation in soils fertilized with recycled phosphorus products. J. Soil Sci. Plant Nutr. 19, 611-619. doi: 10.1007/s42729-019-00061-8 · DOI
- Calvo, P., Zebelo, S., Mcnear, D., Kloepper, J., and Fadamiro, H. (2019). Plant growth-promoting rhizobacteria induce changes in Arabidopsis thaliana gene expression of nitrate and ammonium uptake genes. J. Plant Interact. 14, 224-231. doi: 10.1080/17429145.2019.1602887 · DOI
- Cha, J.-Y., Han, S., Hong, H.-J., Cho, H., Kim, D., Kwon, Y., et al. (2016). Microbial and biochemical basis of a Fusarium wilt-suppressive soil. ISME J. 10, 119-129. doi: 10.1038/ismej.2015.95 · DOI
- Chane, A., Barbey, C., Bourigault, Y., Maillot, O., Rodrigues, S., Bouteiller, M., et al. (2019). A flavor lactone mimicking AHL quorum-sensing signals exploits the broad affinity of the QsdR regulator to stimulate transcription of the rhodococcal qsd operon involved in quorum-quenching and biocontrol activities. Front. Microbiol. 10:786. doi: 10.3389/fmicb.2019.00786 · DOI
- Chang, P., Gerhardt, K. E., Huang, X.-D., Yu, X.-M., Glick, B. R., Gerwing, P. D., et al. (2014). Plant growth-promoting bacteria facilitate the growth of barley and oats in salt-impacted soil: implications for phytoremediation of saline soils. Int. J. Phytoremediation 16, 1133-1147. doi: 10.1080/15226514.2013.821447 · DOI
- Chatterjee, P., Kanagendran, A., Samaddar, S., Pazouki, L., Sa, T.-M., and Niinemets, Ü. (2020). Influence of Brevibacterium linens RS16 on foliage photosynthetic and volatile emission characteristics upon heat stress in Eucalyptus grandis. Sci. Total Environ. 700:134453. doi: 10.1016/j.scitotenv.2019.134453 · DOI
- Chen, M., Wang, J., Liu, B., Zhu, Y., Xiao, R., Yang, W., et al. (2020). Biocontrol of tomato bacterial wilt by the new strain Bacillus velezensis FJAT-46737 and its lipopeptides. BMC Microbiol. 20:160. doi: 10.1186/s12866-020-01851-2 · DOI
- Chialva, M., Salvioli Di Fossalunga, A., Daghino, S., Ghignone, S., Bagnaresi, P., Chiapello, M., et al. (2018). Native soils with their microbiotas elicit a state of alert in tomato plants. New Phytol. 220, 1296-1308. doi: 10.1111/nph.15014 · DOI
- Clemens, S. (2014). Zn and Fe biofortification: the right chemical environment for human bioavailability. Plant Sci. 225, 52-57. doi: 10.1016/j.plantsci.2014.05.014 · DOI
- Cohen, A. C., Bottini, R., Pontin, M., Berli, F. J., Moreno, D., Boccanlandro, H., et al. (2015). Azospirillum brasilense ameliorates the response of Arabidopsis thaliana to drought mainly via enhancement of ABA levels. Physiol. Plant. 153, 79-90. doi: 10.1111/ppl.12221 · DOI
- Collavino, M. M., Tripp, H. J., Frank, I. E., Vidoz, M. L., Calderoli, P. A., Donato, M., et al. (2014). nifH pyrosequencing reveals the potential for location-specific soil chemistry to influence N 2 -fixing community dynamics. Environ. Microbiol. 16, 3211-3223. doi: 10.1111/1462-2920.12423 · DOI
- Dai, L., Zhang, G., Yu, Z., Ding, H., Xu, Y., and Zhang, Z. (2019). Effect of drought stress and developmental stages on microbial community structure and diversity in peanut rhizosphere soil. Int. J. Mol. Sci. 20:2265. doi: 10.3390/ijms20092265 · DOI
- Damodaran, T., Sah, V., Rai, R., Sharma, D., Mishra, V., Jha, S., et al. (2013). Isolation of salt tolerant endophytic and rhizospheric bacteria by natural selection and screening for promising plant growth-promoting rhizobacteria (PGPR) and growth vigour in tomato under sodic environment. Afr. J. Microbiol. Res. 7, 5082-5089. doi: 10.5897/AJMR2013.6003 · DOI
- De La Torre-González, A., Montesinos-Pereira, D., Blasco, B., and Ruiz, J. (2018). Influence of the proline metabolism and glycine betaine on tolerance to salt stress in tomato (Solanum lycopersicum L.) commercial genotypes. J. Plant Physiol. 231, 329-336. doi: 10.1016/j.jplph.2018.10.013 · DOI
- De Meyer, S. E., De Beuf, K., Vekeman, B., and Willems, A. (2015). A large diversity of non-rhizobial endophytes found in legume root nodules in Flanders (Belgium). Soil Biol. Biochem. 83, 1-11. doi: 10.1016/j.soilbio.2015. 01.002 · DOI
- Defoirdt, T. (2018). Quorum-sensing systems as targets for antivirulence therapy. Trends Microbiol. 26, 313-328. doi: 10.1016/j.tim.2017.10.005 · DOI
- Dessaux, Y., Grandclément, C., and Faure, D. (2016). Engineering the rhizosphere. Trends Plant Sci. 21, 266-278. doi: 10.1016/j.tplants.2016.01.002 · DOI
- Disi, J. O., Mohammad, H. K., Lawrence, K., Kloepper, J., and Fadamiro, H. (2019). A soil bacterium can shape belowground interactions between maize, herbivores and entomopathogenic nematodes. Plant Soil 437, 83-92. doi: 10.1007/s11104-019-03957-7 · DOI
- Dixit, R., Agrawal, L., Singh, S. P., Singh, P. C., Prasad, V., and Chauhan, P. S. (2018). Paenibacillus lentimorbus induces autophagy for protecting tomato from Sclerotium rolfsii infection. Microbiol. Res. 215, 164-174. doi: 10.1016/j.micres.2018.07.008 · DOI
- Djaya, L., Istifadah, N., Hartati, S., and Joni, I. M. (2019). In vitro study of plant growth promoting rhizobacteria (PGPR) and endophytic bacteria antagonistic to Ralstonia solanacearum formulated with graphite and silica nano particles as a biocontrol delivery system (BDS). Biocatal. Agric. Biotechnol. 19:101153. doi: 10.1016/j.bcab.2019.101153 · DOI
- Egamberdieva, D., Jabborova, D., and Hashem, A. (2015). Pseudomonas induces salinity tolerance in cotton (Gossypium hirsutum) and resistance to Fusarium root rot through the modulation of indole-3-acetic acid. Saudi J. Biol. Sci. 22, 773-779. doi: 10.1016/j.sjbs.2015.04.019 · DOI
- Ejaz, S., Batool, S., Anjum, M. A., Naz, S., Qayyum, M. F., Naqqash, T., et al. (2020). Effects of inoculation of root-associative Azospirillum and Agrobacterium strains on growth, yield and quality of pea (Pisum sativum L.) grown under different nitrogen and phosphorus regimes. Sci. Hortic. 270:109401. doi: 10.1016/j.scienta.2020.109401 · DOI
- El-Borollosy, A. M., and Oraby, M. M. (2012). Induced systemic resistance against Cucumber mosaic cucumovirus and promotion of cucumber growth by some plant growth-promoting rhizobacteria. Ann. Agric. Sci. 57, 91-97. doi: 10.1016/j.aoas.2012.08.001 · DOI
- Etesami, H. (2018). Can interaction between silicon and plant growth promoting rhizobacteria benefit in alleviating abiotic and biotic stresses in crop plants? Agric. Ecosyst. Environ. 253, 98-112. doi: 10.1016/j.agee.2017.11.007 · DOI
- Fageria, N. (2014). Yield and yield components and phosphorus use efficiency of lowland rice genotypes. J. Plant Nutr. 37, 979-989. doi: 10.1080/01904167.2014.888735 · DOI
- Fahimi, A., Ashouri, A., Ahmadzadeh, M., Hoseini Naveh, V., Asgharzadeh, A., Maleki, F., et al. (2014). Effect of PGPR on population growth parameters of cotton aphid. Arch. Phytopathol. Plant Protect. 47, 1274-1285. doi: 10.1080/03235408.2013.840099 FAO (2019). World Fertilizer Trends and Outlook to 2022. Rome. · DOI
- Fasciglione, G., Casanovas, E. M., Quillehauquy, V., Yommi, A. K., Goñi, M. G., Roura, S. I., et al. (2015). Azospirillum inoculation effects on growth, product quality and storage life of lettuce plants grown under salt stress. Sci. Hortic. 195, 154-162. doi: 10.1016/j.scienta.2015.09.015 · DOI
- Fetzner, S. (2015). Quorum quenching enzymes. J. Biotechnol. 201, 2-14. doi: 10.1016/j.jbiotec.2014.09.001 · DOI
- Gaby, J. C., Rishishwar, L., Valderrama-Aguirre, L. C., Green, S. J., Valderrama-Aguirre, A., Jordan, I. K., et al. (2018). Diazotroph community characterization via a high-throughput nifH amplicon sequencing and analysis pipeline. Appl. Environ. Microbiol. 84:e01512-17. doi: 10.1128/AEM. 01512-17 · DOI
- Gamalero, E., and Glick, B. R. (2015). Bacterial modulation of plant ethylene levels. Plant Physiol. 169, 13-22. doi: 10.1104/pp.15.00284 · DOI
- García, J. E., Maroniche, G., Creus, C., Suárez-Rodríguez, R., Ramirez- Trujillo, J. A., and Groppa, M. D. (2017). In vitro PGPR properties and osmotic tolerance of different Azospirillum native strains and their effects on growth of maize under drought stress. Microbiol. Res. 202, 21-29. doi: 10.1016/j.micres.2017.04.007 · DOI
- García-Contreras, R., Maeda, T., and Wood, T. K. (2016). Can resistance against quorum-sensing interference be selected? ISME J. 10, 4-10. doi: 10.1038/ismej.2015. · DOI
- Ghazalibiglar, H., Hampton, J. G., De Jong, E. V. Z., and Holyoake, A. (2016). Is induced systemic resistance the mechanism for control of black rot in Brassica oleracea by a Paenibacillus sp.? Biol. Control 92, 195-201. doi: 10.1016/j.biocontrol.2015.10.014 · DOI
- Ghosh, S. K., Bera, T., and Chakrabarty, A. M. (2020). Microbial siderophore-A boon to agricultural sciences. Biol. Control 144, 104214. doi: 10.1016/j.biocontrol.2020.104214 · DOI
- Glick, B. R. (2012). Plant growth-promoting bacteria: mechanisms and applications. Scientifica 2012:963401. doi: 10.6064/2012/963401 · DOI · Paper page
- Gopalakrishnan, S., Srinivas, V., Alekhya, G., Prakash, B., Kudapa, H., Rathore, A., et al. (2015). The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea. Springer Plus 4:31. doi: 10.1186/s40064-015-0811-3 · DOI
- Goteti, P. K., Emmanuel, L. D. A., Desai, S., and Shaik, M. H. A. (2013). Prospective zinc solubilising bacteria for enhanced nutrient uptake and growth promotion in maize (Zea mays L.). Int. J. Microbiol. 2013:869697. doi: 10.1155/2013/869697 · DOI
- Grandclément, C., Tannières, M., Moréra, S., Dessaux, Y., and Faure, D. (2016). Quorum quenching: role in nature and applied developments. FEMS Microbiol. Rev. 40, 86-116. doi: 10.1093/femsre/fuv038 · DOI
- Großkinsky, D. K., Tafner, R., Moreno, M. V., Stenglein, S. A., De Salamone, I. E. G., Nelson, L. M., et al. (2016). Cytokinin production by Pseudomonas fluorescens G20-18 determines biocontrol activity against Pseudomonas syringae in Arabidopsis. Sci. Rep. 6:23310. doi: 10.1038/srep23310 · DOI
- Gull, M., and Hafeez, F. Y. (2012). Characterization of siderophore producing bacterial strain Pseudomonas fluorescens Mst 8.2 as plant growth promoting and biocontrol agent in wheat. Afr. J. Microbiol. Res. 6, 6308-6318. doi: 10.5897/AJMR12.1285 · DOI
- Gunarathne, V., Mayakaduwa, S., Ashiq, A., Weerakoon, S. R., Biswas, J. K., and Vithanage, M. (2019). "Transgenic plants: benefits, applications, and potential risks in phytoremediation, " in Transgenic Plant Technology for Remediation of Toxic Metals and Metalloids, ed M. N. V. Prasad (Hyderabad: Elsevier), 89-102. doi: 10.1016/B978-0-12-814389-6.00005-5 · DOI
- Guo, Q., Li, Y., Lou, Y., Shi, M., Jiang, Y., Zhou, J., et al. (2019). Bacillus amyloliquefaciens Ba13 induces plant systemic resistance and improves rhizosphere microecology against tomato yellow leaf curl virus disease. Appl. Soil Ecol. 137, 154-166. doi: 10.1016/j.apsoil.2019.01.015 · DOI
- Gupta, G., Parihar, S. S., Ahirwar, N. K., Snehi, S. K., and Singh, V. (2015). Plant growth promoting rhizobacteria (PGPR): current and future prospects for development of sustainable agriculture. J. Microb. Biochem. Technol. 7, 096-102. doi: 10.4172/1948-5948.1000188 · DOI
- Habib, S. H., Kausar, H., and Saud, H. M. (2016). Plant growth-promoting rhizobacteria enhance salinity stress tolerance in okra through ROS-scavenging enzymes. Biomed Res. Int. 2016:6284547. doi: 10.1155/2016/6284547 · DOI
- Hafeez, B., Khanif, Y., and Saleem, M. (2013). Role of zinc in plant nutrition-a review. J. Exp. Agric. Int. 3, 374-391. doi: 10.9734/AJEA/2013/2746 · DOI
- Hahm, M.-S., Son, J.-S., Hwang, Y.-J., Kwon, D.-K., and Ghim, S.-Y. (2017). Alleviation of salt stress in pepper (Capsicum annum L.) plants by plant growth-promoting rhizobacteria. J. Microbiol. Biotechnol. 27, 1790-1797. doi: 10.4014/jmb.1609.09042 · DOI
- Hakim, S., Imran, A., and Mirza, M. S. (2020a). Phylogenetic diversity analysis reveals Bradyrhizobium yuanmingense and Ensifer aridi as major symbionts of mung bean (Vigna radiata L.) in Pakistan. Braz. J. Microbiol. 1-14. doi: 10.1007/s42770-020-00397-9 · DOI
- Hakim, S., Mirza, B. S., Imran, A., Zaheer, A., Yasmin, S., Mubeen, F., et al. (2020b). Illumina sequencing of 16S rRNA tag shows disparity in rhizobial and non-rhizobial diversity associated with root nodules of mung bean (Vigna radiata L.) growing in different habitats in Pakistan. Microbiol. Res. 231:126356. doi: 10.1016/j.micres.2019.126356 · DOI
- Hakim, S., Mirza, B. S., Zaheer, A., Mclean, J. E., Imran, A., Yasmin, S., et al. (2018). Retrieved 16S rRNA and nifH sequences reveal co-dominance of Bradyrhizobium and Ensifer (Sinorhizobium) strains in field-collected root nodules of the promiscuous host Vigna radiata (L.) R. Wilczek. Appl. Microbiol. Biotechnol. 102, 485-497. doi: 10.1007/s00253-017-8609-6 · DOI
- Hanif, M. K., Malik, K. A., Hameed, S., Saddique, M. J., Fatima, K., Naqqash, T., et al. (2020). Growth stimulatory effect of AHL producing Serratia spp. from potato on homologous and non-homologous host plants. Microbiol. Res. 238:126506. doi: 10.1016/j.micres.2020.126506 · DOI
- Hassan, M. K., Mcinroy, J. A., Jones, J., Shantharaj, D., Liles, M. R., and Kloepper, J. W. (2019a). Pectin-rich amendment enhances soybean growth promotion and nodulation mediated by Bacillus velezensis strains. Plants 8:120. doi: 10.3390/plants8050120 · DOI
- Hassan, M. K., Mcinroy, J. A., and Kloepper, J. W. (2019b). The interactions of rhizodeposits with plant growth-promoting rhizobacteria in the rhizosphere: a review. Agriculture 9:142. doi: 10.3390/agriculture9070142 · DOI
- Heydarian, Z., Gruber, M., Glick, B. R., and Hegedus, D. D. (2018). Gene expression patterns in roots of Camelina sativa with enhanced salinity tolerance arising from inoculation of soil with plant growth promoting bacteria producing 1-aminocyclopropane-1-carboxylate deaminase or expression the corresponding acds gene. Front. Microbiol. 9:1297. doi: 10.3389/fmicb.2018.01297 · DOI
- Htwe, A. Z., Moh, S. M., Moe, K., and Yamakawa, T. (2018). Effects of co-inoculation of Bradyrhizobium japonicum SAY3-7 and Streptomyces griseoflavus P4 on plant growth, nodulation, nitrogen fixation, nutrient uptake, and yield of soybean in a field condition. Soil Sci. Plant Nutr. 64, 222-229. doi: 10.1080/00380768.2017.14 21436 · DOI
- Htwe, A. Z., Moh, S. M., Soe, K. M., Moe, K., and Yamakawa, T. (2019). Effects of biofertilizer produced from Bradyrhizobium and Streptomyces griseoflavus on plant growth, nodulation, nitrogen fixation, nutrient uptake, and seed yield of mung bean, cowpea, and soybean. Agronomy 9:77. doi: 10.3390/agronomy9020077 · DOI
- Hu, L., Robert, C. A., Cadot, S., Zhang, X., Ye, M., Li, B., et al. (2018). Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota. Nat. Commun. 9, 1-13. doi: 10.1038/s41467-018-05122-7 · DOI
- Imran, A., Hafeez, F. Y., Fruhling, A., Schumann, P., Malik, K. A., and Stackebrandt, E. (2010). Ochrobactrum ciceri sp. nov., isolated from nodules of Cicer arietinum. Int. J. Syst. Evol. Microbiol. 60, 1548-1553. doi: 10.1099/ijs.0.013987-0 · DOI
- Imran, A., Mirza, M. S., Shah, T. M., Malik, K. A., and Hafeez, F. Y. (2015). Differential response of kabuli and desi chickpea genotypes toward inoculation with PGPR in different soils. Front. Microbiol. 6:859. doi: 10.3389/fmicb.2015.00859 · DOI
- Imran, A., Saadalla, M. J. A., Khan, S.-U., Mirza, M. S., Malik, K. A., and Hafeez, F. Y. (2014). Ochrobactrum sp. Pv2Z2 exhibits multiple traits of plant growth promotion, biodegradation and N-acyl-homoserine-lactone quorum sensing. Ann. Microbiol. 64, 1797-1806. doi: 10.1007/s13213-014-0824-0 · DOI
- IPCC (2007). "Mitigation of climate change", in Climate Change 2007: Mitigation. Contribution of Working Group III to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, ed B. Metz (New York, NY: Cambridge University Press), 1-850. Available online at: https://www.ipcc.ch/ site/assets/uploads/2018/03/ar4_wg3_full_report-1.pdf
- Ipek, M., Aras, S., Arikan, S., Eşitken, A., Pirlak, L., Dönmez, M. F., et al. (2017). Root plant growth promoting rhizobacteria inoculations increase ferric chelate reductase (FC-R) activity and Fe nutrition in pear under calcareous soil conditions. Sci. Hortic. 219, 144-151. doi: 10.1016/j.scienta.2017.02.043 · DOI
- Iqbal, U., Jamil, N., Ali, I., and Hasnain, S. (2010). Effect of zinc-phosphate- solubilizing bacterial isolates on growth of Vigna radiata. Ann. Microbiol. 60, 243-248. doi: 10.1007/s13213-010-0033-4 · DOI
- Islam, S., Akanda, A. M., Prova, A., Islam, M. T., and Hossain, M. M. (2016). Isolation and identification of plant growth promoting rhizobacteria from cucumber rhizosphere and their effect on plant growth promotion and disease suppression. Front. Microbiol. 6:1360. doi: 10.3389/fmicb.2015.01360 · DOI
- Issa, A., Esmaeel, Q., Sanchez, L., Courteaux, B., Guise, J.-F., Gibon, Y., et al. (2018). Impacts of Paraburkholderia phytofirmans strain PsJN on tomato (Lycopersicon esculentum L.) under high temperature. Front. Plant Sci. 9:1397. doi: 10.3389/fpls.2018.01397 · DOI
- Jha, C. K., and Saraf, M. (2015). Plant growth promoting rhizobacteria (PGPR): a review. J. Agric. Res. Dev. 5, 108-119. doi: 10.3389/fpls.2018.01473 · DOI
- Ji, J., Yuan, D., Jin, C., Wang, G., Li, X., and Guan, C. (2020). Enhancement of growth and salt tolerance of rice seedlings (Oryza sativa L.) by regulating ethylene production with a novel halotolerant PGPR strain Glutamicibacter sp. YD01 containing ACC deaminase activity. Acta Physiol. Plant. 42, 1-17. doi: 10.1007/s11738-020-3034-3 · DOI
- Jiang, S., Zhang, D., Wang, L., Pan, J., Liu, Y., Kong, X., et al. (2013). A maize calcium-dependent protein kinase gene, ZmCPK4, positively regulated abscisic acid signaling and enhanced drought stress tolerance in transgenic Arabidopsis. Plant Physiol. Biochem. 71, 112-120. doi: 10.1016/j.plaphy.2013.07.004 · DOI
- Jing, H., Xia, X., Liu, H., Zhou, Z., Wu, C., and Nagarajan, S. (2015). Anthropogenic impact on diazotrophic diversity in the mangrove rhizosphere revealed by nifH pyrosequencing. Front. Microbiol. 6:1172. doi: 10.3389/fmicb.2015.01172 · DOI
- Joshi, M., Srivastava, R., Sharma, A. K., and Prakash, A. (2015). Screening of resistant varieties and antagonistic Fusarium oxysporum for biocontrol of Fusarium wilt of chilli. J. Plant Pathol. Microbiol. 3:5. doi: 10.4172/2157-7471.1000134 · DOI
- Kalayu, G. (2019). Phosphate solubilizing microorganisms: promising approach as biofertilizers. Int. J. Agron. 2019:4917256. doi: 10.1155/2019/4917256 · DOI
- Kamran, S., Shahid, I., Baig, D. N., Rizwan, M., Malik, K. A., and Mehnaz, S. (2017). Contribution of zinc solubilizing bacteria in growth promotion and zinc content of wheat. Front. Microbiol. 8:2593. doi: 10.3389/fmicb.2017.02593 · DOI
- Kang, S.-M., Hamayun, M., Khan, M. A., Iqbal, A., and Lee, I.-J. (2019a). Bacillus subtilis JW1 enhances plant growth and nutrient uptake of Chinese cabbage through gibberellins secretion. J. Appl. Bot. Food Qual. 92, 172-178. doi: 10.5073/JABFQ.2019.092.023 · DOI
- Kang, S.-M., Khan, A. L., Hamayun, M., Hussain, J., Joo, G.-J., You, Y.- H., et al. (2012). Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones. J. Microbiol. 50, 902-909. doi: 10.1007/s12275-012-2273-4 · DOI
- Kang, S.-M., Khan, A. L., Waqas, M., Asaf, S., Lee, K.-E., Park, Y.-G., et al. (2019b). Integrated phytohormone production by the plant growth-promoting rhizobacterium Bacillus tequilensis SSB07 induced thermotolerance in soybean. J. Plant Int. 14, 416-423. doi: 10.1080/17429145.2019.1640294 · DOI
- Kang, S.-M., Khan, A. L., Waqas, M., You, Y.-H., Hamayun, M., Joo, G.-J., et al. (2015). Gibberellin-producing Serratia nematodiphila PEJ1011 ameliorates low temperature stress in Capsicum annuum L. Eur. J. Soil Biol. 68, 85-93. doi: 10.1016/j.ejsobi.2015.02.005 · DOI
- Kang, S.-M., Khan, A. L., You, Y.-H., Kim, J.-G., Kamran, M., and Lee, I.-J. (2014a). Gibberellin production by newly isolated strain Leifsonia soli SE134 and its potential to promote plant growth. J. Microbiol. Biotechnol. 24, 106-112. doi: 10.4014/jmb.1304.04015 · DOI
- Kang, S.-M., Radhakrishnan, R., Khan, A. L., Kim, M.-J., Park, J.-M., Kim, B.-R., et al. (2014b). Gibberellin secreting rhizobacterium, Pseudomonas putida H- 2-3 modulates the hormonal and stress physiology of soybean to improve the plant growth under saline and drought conditions. Plant Physiol. Biochem. 84, 115-124. doi: 10.1016/j.plaphy.2014.09.001 · DOI
- Kang, S.-M., Waqas, M., Hamayun, M., Asaf, S., Khan, A. L., Kim, A.-Y., et al. (2017). Gibberellins and indole-3-acetic acid producing rhizospheric bacterium Leifsonia xyli SE134 mitigates the adverse effects of copper-mediated stress on tomato. J. Plant Int. 12, 373-380. doi: 10.1080/17429145.2017.1370142 · DOI
- Karnwal, A. (2017). Isolation and identification of plant growth promoting rhizobacteria from maize (Zea mays L.) rhizosphere and their plant growth promoting effect on rice (Oryza sativa L.). J. Plant Protect. Res. 57, 144-151. doi: 10.1515/jppr-2017-0020 · DOI
- Karthika, S., Midhun, S. J., and Jisha, M. (2020). A potential antifungal and growth- promoting bacterium Bacillus sp. KTMA4 from tomato rhizosphere. Microb. Pathog. 142:104049. doi: 10.1016/j.micpath.2020.104049 · DOI
- Kechid, M., Desbrosses, G., Rokhsi, W., Varoquaux, F., Djekoun, A., and Touraine, B. (2013). The NRT 2.5 and NRT 2.6 genes are involved in growth promotion of Arabidopsis by the plant growth-promoting rhizobacterium (PGPR) strain Phyllobacterium brassicacearum STM 196. New Phytol. 198, 514-524. doi: 10.1111/nph.12158 · DOI
- Kesten, C., Gámez-Arjona, F. M., Menna, A., Scholl, S., Dora, S., Huerta, A. I., et al. (2019). Pathogen-induced pH changes regulate the growth- defense balance in plants. EMBO J. 38:e101822. doi: 10.15252/embj.20191 01822 · DOI
- Khan, M. A., Asaf, S., Khan, A. L., Jan, R., Kang, S.-M., Kim, K.-M., et al. (2020). Extending thermotolerance to tomato seedlings by inoculation with SA1 isolate of Bacillus cereus and comparison with exogenous humic acid application. PLoS ONE 15:e0232228. doi: 10.1371/journal.pone.02 32228 · DOI
- Khan, M. A., Ullah, I., Waqas, M., Hamayun, M., Khan, A. L., Asaf, S., et al. (2019). Halo-tolerant rhizospheric Arthrobacter woluwensis AK1 mitigates salt stress and induces physio-hormonal changes and expression of GmST1 and GmLAX3 in soybean. Symbiosis 77, 9-21. doi: 10.1007/s13199-018-0562-3 · DOI
- Khan, M. S., Zaidi, A., and Ahmad, E. (2014). "Mechanism of phosphate solubilization and physiological functions of phosphate-solubilizing microorganisms, " in Phosphate solubilizing microorganisms, eds M. Khan, A. Zaidi, and J. Musarrat (Cham: Springer), 31-62. doi: 10.1007/978-3-319-08216-5_2 · DOI
- Khan, N., Bano, A., Rahman, M. A., Guo, J., Kang, Z., and Babar, M. A. (2019). Comparative physiological and metabolic analysis reveals a complex mechanism involved in drought tolerance in chickpea (Cicer arietinum L.) induced by PGPR and PGRs. Sci. Rep. 9, 1-19. doi: 10.1038/s41598-019-38702-8 · DOI
- Korir, H., Mungai, N. W., Thuita, M., Hamba, Y., and Masso, C. (2017). Co- inoculation effect of rhizobia and plant growth promoting rhizobacteria on common bean growth in a low phosphorus soil. Front. Plant Sci. 8:141. doi: 10.3389/fpls.2017.00141 · DOI
- Kostenko, O., and Bezemer, T. M. (2020). Abiotic and biotic soil legacy effects of plant diversity on plant performance. Front. Ecol. Evol. 8: 87. doi: 10.3389/fevo.2020.00087 · DOI
- Kour, D., Rana, K. L., Sheikh, I., Kumar, V., Yadav, A. N., Dhaliwal, H. S., et al. (2019). Alleviation of drought stress and plant growth promotion by Pseudomonas libanensis EU-LWNA-33, a drought-adaptive phosphorus- solubilizing bacterium. Proc. Natl. Acad. Sci. India Sect. B Biol. Sci. 90, 785-795. doi: 10.1007/s40011-019-01151-4 · DOI
- Kudoyarova, G., Arkhipova, T. N., Korshunova, T., Bakaeva, M., Loginov, O., and Dodd, I. C. (2019). Phytohormone mediation of interactions between plants and non-symbiotic growth promoting bacteria under edaphic stresses. Front. Plant Sci. 10:1368. doi: 10.3389/fpls.2019.01368 · DOI
- Kumar, A., Dewangan, S., Lawate, P., Bahadur, I., and Prajapati, S. (2019). "Zinc-solubilizing bacteria: a boon for sustainable agriculture, " in Plant Growth Promoting Rhizobacteria for Sustainable Stress Management, eds R. Sayyed, N. Arora, and M. Reddy (Singapore: Springer), 139-155. doi: 10.1007/978-981-13-6536-2_8 · DOI
- Kumar, A., and Dubey, A. (2020). Rhizosphere microbiome: Engineering bacterial competitiveness for enhancing crop production. J. Adv. Res. 24, 337-352. doi: 10.1016/j.jare.2020.04.014 · DOI
- Kumar, A., Maurya, B. R., and Raghuwanshi, R. (2015). Characterization of bacterial strains and their impact on plant growth promotion and yield of wheat and microbial populations of soil. Afr. J. Agric. Res. 10, 1367-1375. doi: 10.5897/AJAR2014.8894 · DOI
- Kumar, V., Singh, P., Jorquera, M. A., Sangwan, P., Kumar, P., Verma, A., et al. (2013). Isolation of phytase-producing bacteria from Himalayan soils and their effect on growth and phosphorus uptake of Indian mustard (Brassica juncea). J. Microbiol. Biotechnol. 29, 1361-1369. doi: 10.1007/s11274-013-1299-z · DOI
- Lade, S. B., Román, C., Del Cueto-Ginzo, A. I., Serrano, L., Sin, E., Achón, M. A., et al. (2019). Differential proteomics analysis reveals that Azospirillium brasilense (Sp7) promotes virus tolerance in maize and tomato seedlings. Eur. J. Plant Pathol. 155, 1241-1263. doi: 10.1007/s10658-019-01852-6 · DOI
- Lanteigne, C., Gadkar, V. J., Wallon, T., Novinscak, A., and Filion, M. (2012). Production of DAPG and HCN by Pseudomonas sp. LBUM300 contributes to the biological control of bacterial canker of tomato. Phytopathology 102, 967-973. doi: 10.1094/PHYTO-11-11-0312 · DOI
- Leite, J., Fischer, D., Rouws, L. F., Fernandes-Júnior, P. I., Hofmann, A., Kublik, S., et al. (2017). Cowpea nodules harbor non-rhizobial bacterial communities that are shaped by soil type rather than plant genotype. Front. Plant Sci. 7:2064. doi: 10.3389/fpls.2016.02064 · DOI
- Li, M., Liu, J., Xu, Y., and Qian, G. (2016). Phosphate adsorption on metal oxides and metal hydroxides: a comparative review. Environ. Rev. 24, 319-332. doi: 10.1139/er-2015-0080 · DOI
- Liu, D., Liu, Y., Zhang, W., Chen, X., and Zou, C. (2017). Agronomic approach of zinc biofortification can increase zinc bioavailability in wheat flour and thereby reduce zinc deficiency in humans. Nutrients 9: 465. doi: 10.3390/nu9050465 · DOI
- Liu, F., Xing, S., Ma, H., Du, Z., and Ma, B. (2013). Cytokinin-producing, plant growth-promoting rhizobacteria that confer resistance to drought stress in Platycladus orientalis container seedlings. Appl. Microbiol. Biotechnol. 97, 9155-9164. doi: 10.1007/s00253-013-5193-2 · DOI
- Liu, K., Garrett, C., Fadamiro, H., and Kloepper, J. W. (2016). Antagonism of black rot in cabbage by mixtures of plant growth-promoting rhizobacteria (PGPR). Biocontrol 61, 605-613. doi: 10.1007/s10526-016-9742-3 · DOI
- Liu, Y., Chen, L., Wu, G., Feng, H., Zhang, G., Shen, Q., et al. (2017). Identification of root-secreted compounds involved in the communication between cucumber, the beneficial Bacillus amyloliquefaciens, and the soil- borne pathogen Fusarium oxysporum. Mol. Plant Microbe Interact. 30, 53-62. doi: 10.1094/MPMI-07-16-0131-R Liu, Y., Chen, L., Zhang, N., Li, Z., Zhang, G., Xu, Y., et al. (2016a). Plant-microbe communication enhances auxin biosynthesis by a root-associated bacterium, Bacillus amyloliquefaciens SQR9. Mol. Plant Microbe Interact. 29, 324-330. doi: 10.1094/MPMI-10-15-0239-R Liu, Y., Kyle, S., and Straight, P. D. (2018a). Antibiotic stimulation of a Bacillus subtilis migratory response. mSphere 3:e00586-17. doi: 10.1128/mSphere.00586-17 · DOI
- Liu, Y., Qin, Q., and Defoirdt, T. (2018b). Does quorum sensing interference affect the fitness of bacterial pathogens in the real world? Environ. Microbiol. 20, 3918-3926. doi: 10.1111/1462-2920.14446 · DOI
- Liu, Y., Wang, R., Zhang, P., Chen, Q., Luo, Q., Zhu, Y., et al. (2016b). The nitrification inhibitor methyl 3-(4-hydroxyphenyl) propionate modulates root development by interfering with auxin signaling via the NO/ROS pathway. Plant Physiol. 171, 1686-1703. doi: 10.1104/pp.16.00670 · DOI
- Lodewyckx, C., Vangronsveld, J., Porteous, F., Moore, E. R., Taghavi, S., Mezgeay, M., et al. (2002). Endophytic bacteria and their potential applications. Crit. Rev. Plant Sci. 21, 583-606. doi: 10.1080/0735-260291044377 · DOI
- Lohitha, S. R., Bhaskara, R. B. V., Sivaprasad, Y., Prathyusha, M., Sujitha, A., Murali Krishna, T., et al. (2016). Molecular characterization and antagonistic potential of phenazine-1-carboxylic acid producing Pseudomonas fluorescens isolates from economically important crops in South India. Int. J. Clin. Biol. Sci. 1, 30-40. doi: 10.7324/ijcbs.2016.123040 · DOI
- Maheshwari, D. K., Dheeman, S., and Agarwal, M. (2015). "Phytohormone- producing PGPR for sustainable agriculture, " in Bacterial Metabolites in Sustainable Agroecosystem, ed D. Maheshwari (Cham: Springer), 159-182. doi: 10.1007/978-3-319-24654-3_7 · DOI
- Mahmood, S., Daur, I., Al-Solaimani, S. G., Ahmad, S., Madkour, M. H., Yasir, M., et al. (2016). Plant growth promoting rhizobacteria and silicon synergistically enhance salinity tolerance of mung bean. Front. Plant Sci. 7:876. doi: 10.3389/fpls.2016.00876 · DOI
- Majeed, A., Abbasi, M. K., Hameed, S., Imran, A., and Rahim, N. (2015). Isolation and characterization of plant growth-promoting rhizobacteria from wheat rhizosphere and their effect on plant growth promotion. Front. Microbiol. 6:198. doi: 10.3389/fmicb.2015.00198 · DOI
- Maksimov, I., Abizgil'dina, R., and Pusenkova, L. (2011). Plant growth promoting rhizobacteria as alternative to chemical crop protectors from pathogens. Appl. Biochem. Microbiol. 47, 333-345. doi: 10.1134/S0003683811040090 · DOI
- Malhotra, H., Sharma, S., and Pandey, R. (2018). "Phosphorus nutrition: plant growth in response to deficiency and excess, " in Plant Nutrients and Abiotic Stress Tolerance, eds M. Hasanuzzaman, M. Fujita, H. Oku, K. Nahar, and B. Hawrylak-Nowak (Singapore: Springer), 171-190. doi: 10.1007/978-981-10-9044-8_7 · DOI
- Martínez-Hidalgo, P., Galindo-Villardón, P., Trujillo, M. E., Igual, J. M., and Martínez-Molina, E. (2014). Micromonospora from nitrogen fixing nodules of alfalfa (Medicago sativa L.). A new promising plant probiotic bacteria. Sci. Rep. 4:6389. doi: 10.1038/srep06389 · DOI
- Masood, S., Zhao, X. Q., and Shen, R. F. (2020). Bacillus pumilus promotes the growth and nitrogen uptake of tomato plants under nitrogen fertilization. Sci. Hortic. 272:109581. doi: 10.1016/j.scienta.2020.109581 · DOI
- Matos, A. D., Gomes, I. C., Nietsche, S., Xavier, A. A., Gomes, W. S., Dos Santos Neto, J. A., et al. (2017). Phosphate solubilization by endophytic bacteria isolated from banana trees. An. Acad. Bras. Cienc. 89, 2945-2954. doi: 10.1590/0001-3765201720160111 · DOI
- Mcnear, D. H. Jr. (2013). The rhizosphere-roots, soil and everything in between. Nat. Educ. Knowl. 4:1. Available online at: http://www.nature.com/scitable/ knowledge/library/the-rhizosphere-roots-soil-and-67500617
- Mehnaz, S. (2013). "Secondary metabolites of Pseudomonas aurantiaca and their role in plant growth promotion, " in Plant Microbe Symbiosis: Fundamentals and Advances, ed N. Arora (New Dehli: Springer), 373-393. doi: 10.1007/978-81-322-1287-4_14 · DOI
- Mirza, B. S., Potisap, C., Nüsslein, K., Bohannan, B. J., and Rodrigues, J. L. (2014). Response of free-living nitrogen-fixing microorganisms to land use change in the Amazon rainforest. Appl. Environ. Microbiol. 80, 281-288. doi: 10.1128/AEM.02362-13 · DOI
- Mukhtar, T., Smith, D., Sultan, T., Seleiman, M. F., Alsadon, A. A., Ali, S., et al. (2020). Mitigation of heat stress in Solanum lycopersicum l. by acc-deaminase and exopolysaccharide producing Bacillus cereus: effects on biochemical profiling. Sustainability 12, 2159. doi: 10.3390/su12062159 · DOI
- Muleta, A., and Assefa, F. (2018). Isolation and screening of antibiotic producing actinomycetes from rhizosphere and agricultural soils. Afr. J. Biotechnol. 17, 700-715. doi: 10.5897/AJB2017.16080 · DOI
- Mun, B.-G., Lee, W.-H., Kang, S.-M., Lee, S.-U., Lee, S.-M., Lee, D. Y., et al. (2020). Streptomyces sp. LH 4 promotes plant growth and resistance against Sclerotinia sclerotiorum in cucumber via modulation of enzymatic and defense pathways. Plant Soil 448, 87-103. doi: 10.1007/s11104-019-04411-4 · DOI
- Mustafa, S., Kabir, S., Shabbir, U., and Batool, R. (2019). Plant growth promoting rhizobacteria in sustainable agriculture: from theoretical to pragmatic approach. Symbiosis 78, 115-123. doi: 10.1007/s13199-019-00 602-w · DOI
- Nadeem, S. M., Zahir, Z. A., Naveed, M., Asghar, H. N., and Arshad, M. (2010). Rhizobacteria capable of producing acc-deaminase may mitigate salt stress in wheat. Soil Sci. Soc. Am. J. 74, 533-542. doi: 10.2136/sssaj20 08.0240 · DOI
- Naqqash, T., Hameed, S., Imran, A., Hanif, M. K., Majeed, A., and Van Elsas, J. D. (2016). Differential response of potato toward inoculation with taxonomically diverse plant growth promoting rhizobacteria. Front. Plant Sci. 7:144. doi: 10.3389/fpls.2016.00144 · DOI
- Naqqash, T., Imran, A., Hameed, S., Shahid, M., Majeed, A., Iqbal, J., et al. (2020). First report of diazotrophic Brevundimonas spp. as growth enhancer and root colonizer of potato. Sci. Rep. 10, 1-14. doi: 10.1038/s41598-020-69782-6 · DOI
- Naseem, H., and Bano, A. (2014). Role of plant growth-promoting rhizobacteria and their exopolysaccharide in drought tolerance of maize. J. Plant Interact. 9, 689-701. doi: 10.1080/17429145.2014.902125 · DOI
- Nash, M. V., Anesio, A. M., Barker, G., Tranter, M., Varliero, G., Eloe- Fadrosh, E. A., et al. (2018). Metagenomic insights into diazotrophic communities across Arctic glacier forefields. FEMS Microbiol. Ecol. 94:fiy114. doi: 10.1093/femsec/fiy114 · DOI
- Nautiyal, C. S., Srivastava, S., Chauhan, P. S., Seem, K., Mishra, A., and Sopory, S. K. (2013). Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress. Plant Physiol. Biochem. 66, 1-9. doi: 10.1016/j.plaphy.2013.01.020 · DOI
- Nawaz, A., Shahbaz, M., Imran, A., Marghoob, U., Imtiaz, M., Mubeen, F., et al. (2020). Potential of salt tolerant PGPR in growth and yield augmentation of wheat (Triticum aestivum L.) under saline conditions. Front. Microbiol. 11:2019. doi: 10.3389/fmicb.2020.02019 · DOI
- Naziya, B., Murali, M., and Amruthesh, K. N. (2020). Plant Growth-Promoting Fungi (PGPF) Instigate plant growth and induce disease resistance in Capsicum annuum L. upon infection with Colletotrichum capsici (Syd.) Butler & Bisby. Biomolecules 10:41. doi: 10.3390/biom10010041 · DOI
- Naznin, H. A., Kimura, M., Miyazawa, M., and Hyakumachi, M. (2013). Analysis of volatile organic compounds emitted by plant growth-promoting fungus Phoma sp. GS8-3 for growth promotion effects on tobacco. Microbes Environ. 28, 42-49. doi: 10.1264/jsme2.ME12085 · DOI
- Nia, S. H., Zarea, M. J., Rejali, F., and Varma, A. (2012). Yield and yield components of wheat as affected by salinity and inoculation with Azospirillum strains from saline or non-saline soil. J. Saudi Soc. Agric. Sci.1, 113-121. doi: 10.1016/j.jssas.2012.02.001 · DOI
- Noguero, M., Atif, R. M., Ochatt, S., and Thompson, R. D. (2013). The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants. Plant Sci. 209, 32-45. doi: 10.1016/j.plantsci.2013.03.016 · DOI
- O'Brien, J. A., Vega, A., Bouguyon, E., Krouk, G., Gojon, A., Coruzzi, G., et al. (2016). Nitrate transport, sensing, and responses in plants. Mol. Plant 9, 837-856. doi: 10.1016/j.molp.2016.05.004 · DOI
- Oleńska, E., Małek, W., Wójcik, M., Swiecicka, I., Thijs, S., and Vangronsveld, J. (2020). Beneficial features of plant growth-promoting rhizobacteria for improving plant growth and health in challenging conditions: a methodical review. Sci. Total Environ. 743:140682. doi: 10.1016/j.scitotenv.2020.140682 · DOI
- Ortiz, N., Armada, E., Duque, E., Roldán, A., and Azcón, R. (2015). Contribution of arbuscular mycorrhizal fungi and/or bacteria to enhancing plant drought tolerance under natural soil conditions: effectiveness of autochthonous or allochthonous strains. J. Plant Physiol. 174, 87-96. doi: 10.1016/j.jplph.2014.08.019 · DOI
- Osugi, A., and Sakakibara, H. (2015). Q&A: how do plants respond to cytokinins and what is their importance? BMC Biol. 13:120. doi: 10.1186/s12915-015-0214-5 · DOI
- Park, Y.-G., Mun, B.-G., Kang, S.-M., Hussain, A., Shahzad, R., Seo, C.-W., et al. (2017). Bacillus aryabhattai SRB02 tolerates oxidative and nitrosative stress and promotes the growth of soybean by modulating the production of phytohormones. PLoS ONE 12:e0173203. doi: 10.1371/journal.pone.0173203 · DOI
- Philippot, L., Raaijmakers, J. M., Lemanceau, P., and Van Der Putten, W. H. (2013). Going back to the roots: the microbial ecology of the rhizosphere. Nat. Rev. Microbiol. 11, 789-799. doi: 10.1038/nrmicro3109 · DOI
- Pieterse, C. M., Zamioudis, C., Berendsen, R. L., Weller, D. M., Van Wees, S. C., and Bakker, P. A. (2014). Induced systemic resistance by beneficial microbes. Ann. Rev. Phytopathol. 52, 347-375. doi: 10.1146/annurev-phyto-082712-102340 · DOI · Paper page
- Pourbabaee, A. A., Shoaibi, F., Emami, S., and Alikhani, H. A. (2018). The potential contribution of siderophore producing bacteria on growth and Fe ion concentration of sunflower (Helianthus annuus L.) under water stress. J. Plant Nut. 41, 619-626. doi: 10.1080/01904167.2017.1406112 · DOI
- Premachandra, D., Hudek, L., and Brau, L. (2016). Bacterial modes of action for enhancing of plant growth. J. Biotechnol. Biomat. 6, 1-8. doi: 10.4172/2155-952X.1000236 · DOI
- Quiza, L., St-Arnaud, M., and Yergeau, E. (2015). Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering. Front. Plant Sci. 6:507. doi: 10.3389/fpls.2015.00507 · DOI
- Raheem, A., Shaposhnikov, A., Belimov, A. A., Dodd, I. C., and Ali, B. (2018). Auxin production by rhizobacteria was associated with improved yield of wheat (Triticum aestivum L.) under drought stress. Arch. Agron. Soil Sci. 64, 574-587. doi: 10.1080/03650340.2017.1362105 · DOI
- Rajamanickam, S., and Nakkeeran, S. (2020). Flagellin of Bacillus amyloliquefaciens works as a resistance inducer against groundnut bud necrosis virus in chilli (Capsicum annuum L.). Arch. Virol. 165, 1585-1597. doi: 10.1007/s00705-020-04645-z · DOI
- Rajput, L., Imran, A., Mubeen, F., and Hafeez, F. Y. (2018). Wheat (Triticum aestivum L.) growth promotion by halo-tolerant PGPR-consortium. Soil Environ. 37, 178-189. doi: 10.25252/SE/18/61522 · DOI
- Rakshit, A., Sunita, K., Pal, S., Singh, A., and Singh, H. B. (2015). "Bio-priming mediated nutrient use efficiency of crop species, " in Nutrient Use Efficiency: From Basics to Advances, eds A. Rakshit, H. B. Singh, and A. Sen (New Dehli: Springer), 181-191. doi: 10.1007/978-81-322-2169-2_12 · DOI
- Ramesh, A., Sharma, S. K., Sharma, M. P., Yadav, N., and Joshi, O. P. (2014). Inoculation of zinc solubilizing Bacillus aryabhattai strains for improved growth, mobilization and biofortification of zinc in soybean and wheat cultivated in Vertisols of central India. Appl. Soil Ecol. 73, 87-96. doi: 10.1016/j.apsoil.2013.08.009 · DOI
- Rasul, M., Yasmin, S., Suleman, M., Zaheer, A., Reitz, T., Tarkka, M. T., et al. (2019). Glucose dehydrogenase gene containing phosphobacteria for biofortification of phosphorus with growth promotion of rice. Microbiol. Res. 223, 1-12. doi: 10.1016/j.micres.2019.03.004 · DOI
- Reed, S. C., Yang, X., and Thornton, P. E. (2015). Incorporating phosphorus cycling into global modeling efforts: a worthwhile, tractable endeavor. New Phytol. 208, 324-329. doi: 10.1111/nph.13521 · DOI
- Reghuvaran, A., Jacob, K. K., and Ravindranath, A. D. (2012). Isolation and characterization of nitrogen fixing bacteria from raw coir pith. Afri. J. Biotechnol. 11, 7063-7071. doi: 10.5897/AJB11.2205 · DOI
- Richardson, A. E., and Simpson, R. J. (2011). Soil microorganisms mediating phosphorus availability update on microbial phosphorus. Plant Physiol. 156, 989-996. doi: 10.1104/pp.111.175448 · DOI
- Rodríguez, M., Torres, M., Blanco, L., Béjar, V., Sampedro, I., and Llamas, I. (2020). Plant growth-promoting activity and quorum quenching-mediated biocontrol of bacterial phytopathogens by Pseudomonas segetis strain P6. Sci. Rep. 10, 1-12. doi: 10.1038/s41598-020-61084-1 · DOI
- Romero, M., Martin-Cuadrado, A.-B., and Otero, A. (2012). Determination of whether quorum quenching is a common activity in marine bacteria by analysis of cultivable bacteria and metagenomic sequences. Appl. Environ. Microbiol. 78, 6345-6348. doi: 10.1128/AEM.01266-12 · DOI
- Saarenheimo, J., Tiirola, M. A., and Rissanen, A. J. (2015). Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes. Front. Microbiol. 6:674. doi: 10.3389/fmicb.2015.00674 · DOI
- Sah, S., Singh, N., and Singh, R. (2017). Iron acquisition in maize (Zea mays L.) using Pseudomonas siderophore. Biotech 7, 1-7. doi: 10.1007/s13205-017-0772-z · DOI
- Sahu, G., and Sindhu, S. (2011). Disease control and plant growth promotion of green gram by siderophore producing Pseudomonas sp. Res. J. Microbiol. 6, 735. doi: 10.3923/jm.2011. 735.749 · DOI
- Saraf, M., Jha, C. K., and Patel, D. (2010). "The role of ACC deaminase producing PGPR in sustainable agriculture, " in Plant Growth and Health Promoting Bacteria, ed D. Maheshwari (Berlin, Heidelberg: Springer), 365-385. doi: 10.1007/978-3-642-13612-2_16 · DOI
- Saravanan, V., Kumar, M. R., and Sa, T. (2011). "Microbial zinc solubilization and their role on plants, " in Bacteria in Agrobiology: Plant Nutrient Management, ed D. Maheshwari (Berlin, Heidelberg: Springer), 47-63. doi: 10.1007/978-3-642-21061-7_3 · DOI
- Sarkar, J., Chakraborty, B., and Chakraborty, U. (2018). Plant growth promoting rhizobacteria protect wheat plants against temperature stress through antioxidant signalling and reducing chloroplast and membrane injury. J. Plant Growth Regul. 37, 1396-1412. doi: 10.1007/s00344-018-9789-8 · DOI
- Schmid, M. W., Hahl, T., Van Moorsel, S. J., Wagg, C., De Deyn, G. B., and Schmid, B. (2018). Rhizosphere bacterial community composition depends on plant diversity legacy in soil and plant species identity. BioRxiv [Preprint]. 287235. doi: 10.1101/287235 · DOI
- Schoebitz, M., Ceballos, C., and Ciamp, L. (2013). Effect of immobilized phosphate solubilizing bacteria on wheat growth and phosphate uptake. J. Soil Sci. Plant Nut. 13, 1-10. doi: 10.4067/S0718-95162013005000001 · DOI
- Seleim, M., Saead, F., Abd-El-Moneem, K., and Abo-Elyousr, K. (2011). Biological control of bacterial wilt of tomato by plant growth promoting rhizobacteria. Plant Pathol. J. 10, 146-153. doi: 10.3923/ppj.2011.146.153 · DOI
- Shahzad, R., Khan, A. L., Bilal, S., Waqas, M., Kang, S.-M., and Lee, I.-J. (2017). Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa. Environ. Exp. Bot. 136, 68-77. doi: 10.1016/j.envexpbot.2017.01.010 · DOI
- Shaikh, S., and Saraf, M. (2017). Zinc biofortification: Strategy to conquer zinc malnutrition through zinc solubilizing PGPR's. Biomed. J. Sci. Tech. Res. 1, 224-226. doi: 10.26717/BJSTR.2017.01.000158 · DOI
- Shameer, S., and Prasad, T. (2018). Plant growth promoting rhizobacteria for sustainable agricultural practices with special reference to biotic and abiotic stresses. Plant Growth Regul. 84, 603-615. doi: 10.1007/s10725-017-0365-1 · DOI
- Sharma, S., Kumar, V., and Tripathi, R. B. (2011). Isolation of phosphate solubilizing microorganism (PSMs) from soil. J. Microbiol. Biotechnol. Res. 1, 90-95. Available online at: https://www.researchgate.net/publication/ 267368923
- Sharma, S. B., Sayyed, R. Z., Trivedi, M. H., and Gobi, T. A. (2013). Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. SpringerPlus 2:587. doi: 10.1186/2193-1801-2-587 · DOI
- Shen, X., Hu, H., Peng, H., Wang, W., and Zhang, X. (2013). Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas. BMC Genomics 14:271. doi: 10.1186/1471-2164-14-271 · DOI
- Singh, S. K. (2020). "Microbes for iron chlorosis remediation in Peach, " in Biostimulants in Plant Science, ed S. Mirmajlessi, and R. Radhakrishnan (London: IntechOpen). doi: 10.5272/intechopen.B2916 · DOI
- Staudinger, C., Mehmeti-Tershani, V., Gil-Quintana, E., Gonzalez, E. M., Hofhansl, F., Bachmann, G., et al. (2016). Evidence for a rhizobia-induced drought stress response strategy in Medicago truncatula. J. Proteomics 136, 202-213. doi: 10.1016/j.jprot.2016.01.006 · DOI
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Villavicencio-Vásquez, M., Espinoza-Lozano, F., Espinoza-Lozano, L., & Coronel-León, J. (2025) · Frontiers in Agronomy · doi:10.3389/fagro.2025.1578915 · Cited by 122 · see citing works
Multifaceted Plant Growth Promoting Yeasts Isolated from Rice and its Functional Characterization
Muthuramalingam, G., Narayanasamy, S., Kamoshita, A., & Uthandi, S. (2025) · Indian Journal of Agricultural Research · doi:10.18805/ijare.a-6464
- Authors
- Hakim, S., Naqqash, T., Nawaz, M. S., Laraib, I., Siddique, M. J., Zia, R., Mirza, M. S., & Imran, A.
- Affiliations
- National Institute for Biotechnology and Genetic Engineering (PK)
- Bahauddin Zakariya University (PK)
- Corresponding author
- Imran, Asma
- Venue
- Frontiers in Sustainable Food Systems
- Publisher
- Frontiers Media SA
- Published
- 2021-02-15
- Volume
- 5
- ISSN
- 2571-581X (ISSN-L)
- OpenAlex
- W3131483066
- Cited by
- 507
- References
- 4
- Citations by year
- 2026: 102 · 2025: 110 · 2024: 123 · 2023: 86 · 2022: 69 · 2021: 17
- FWCI
- 44.49
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Frontiers in Sustainable Food Systems (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Agriculture, Plant Science, Crop Management
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Legume Nitrogen Fixing Symbiosis
- Keywords
- rhizosphere engineering, plant growth-promoting rhizobacteria, plant growth-promoting microorganisms, sustainable agriculture, chemical fertilizer substitution, plant hormones, siderophores, N-acyl homoserine lactones, stress tolerance, drought tolerance, salt tolerance, heat tolerance, soil fertility, nutrient availability, plant-microbe interactions
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