Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species
Open accessAbstract
Bovidae, the largest family in Pecora infraorder, are characterized by a striking variability in diploid number of chromosomes between species and among individuals within a species. The bovid X chromosome is also remarkably variable, with several morphological types in the family. Here we built a detailed chromosome map of musk ox (Ovibos moschatus), a relic species originating from Pleistocene megafauna, with dromedary and human probes using chromosome painting. We trace chromosomal rearrangements during Bovidae evolution by comparing species already studied by chromosome painting. The musk ox karyotype differs from the ancestral pecoran karyotype by six fusions, one fission, and three inversions. We discuss changes in pecoran ancestral karyotype in the light of new painting data. Variations in the X chromosome structure of four bovid species nilgai bull (Boselaphus tragocamelus), saola (Pseudoryx nghetinhensis), gaur (Bos gaurus), and Kirk’s Dikdik (Madoqua kirkii) were further analyzed using 26 cattle BAC-clones. We found the duplication on the X in saola. We show main rearrangements leading to the formation of four types of bovid X: Bovinae type with derived cattle subtype formed by centromere reposition and Antilopinae type with Caprini subtype formed by inversion in XSB1.
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Chromosomal scaffolding, orientation and assignments were refined and adjusted with a final alignment against the comparative chromosome map established by chromosome painting for the muskox, human and dromedary genomes.
“Chromosomal scaffolding, orientation and assignments were further refined and adjusted with a final alignment against the comparative chromosome map established by chromosome painting for the muskox, human (GCF_000001405.40) and the dromedary genomes (GCF000803125.2)43.”
From Chromosomal-level reference genome assembly of muskox (Ovibos moschatus) from Banks Island in the Canadian Arctic, a resource for conservation genomics (2024) · cites this paper as [43]
The relationships between muskox, PAK, cattle, and human were validated in this study by sequence alignment.
“The relationships between muskox, PAK, cattle, and human were established by Proskuryakova and colleagues through chromosome painting43 and validated in this study by sequence alignment.”
From Chromosomal-level reference genome assembly of muskox (Ovibos moschatus) from Banks Island in the Canadian Arctic, a resource for conservation genomics (2024) · cites this paper as [43]
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- Authors
- Proskuryakova, A. A., Kulemzina, A. I., Perelman, P. L., Yudkin, D. V., Lemskaya, N. A., Okhlopkov, I. M., Kirillin, E. V., Farré, M., Larkin, D. M., Roelke-Parker, M. E., O’Brien, S. J., Bush, M., & Graphodatsky, A. S.
- Affiliations
- Institute of Molecular and Cell Biology (RU)
- Novosibirsk State University (RU)
- State Research Center of Virology and Biotechnology VECTOR (RU)
- Siberian Branch of the Russian Academy of Sciences (RU)
- Institute for Biological Problems of Cryolithozone Siberian Branch of RAS, 677980 Yakutsk, Russia
- University of London (GB)
- Frederick National Laboratory of Cancer Research, Leidos Biomedical Research, Inc., Frederick, MD 21701, USA
- St Petersburg University (RU)
- The Center for Species Survival, Department of Reproductive Sciences, Smithsonian Conservation Biology Institute, Smithsonian’s National Zoological Park, 1500 Remount Road, Front Royal, VA 22630, USA
- Corresponding author
- Proskuryakova, Anastasia A.
- ORCID
- Venue
- Genes
- Publisher
- MDPI AG
- Published
- 2019-10-29
- Volume
- 10
- Issue
- 11
- Pages
- 857
- ISSN
- 2073-4425 (ISSN-L)
- PMC
- PMC6896007
- OpenAlex
- W2982300097
- Cited by
- 9
- References
- 49
- Citations by year
- 2024: 1 · 2023: 2 · 2022: 2 · 2021: 1 · 2020: 3
- FWCI
- 1.11
- Type
- journal article
- Language
- en
- Open access
- gold
- dx.doi.org
- Licence
- Locations
- Genes (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Kent Academic Repository (University of Kent) (submittedVersion)
- RVC Research Online (Royal Veterinary College) (submittedVersion, cc-by)
- NSUWorks (Nova Southeastern University) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Russian Science Foundation (RSF, 19-14-00034)
- Biotechnology and Biological Sciences Research Council (Grant BB/P020062/1)
- Российский Фонд Фундаментальных Исследований (РФФИ) (17-00-00145)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genome Rearrangement Algorithms
- Keywords
- Ovibos moschatus, Bovidae, X chromosome, chromosome painting, karyotype evolution, chromosomal rearrangements, X chromosome duplication, centromere repositioning, Bovinae, Antilopinae, nilgai, gaur, comparative chromosome mapping
- MeSH terms
- Animals, Antelopes, X Chromosome, Evolution, Molecular, Chromosome Painting, Karyotype
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