Cited by 17Antibiotic Resistance in BacteriaBacterial Genetics and BiotechnologyBacterial Identification and Susceptibility Testing

Insight into Antibiotic Synergy Combinations for Eliminating Colistin Heteroresistant Klebsiella pneumoniae

Open access
Rajakani, Sahaya Glingston, Xavier, Basil Britto, Sey, Adwoa, Mariem, El Bounja, Lammens, Christine, Goossens, Herman, Glupczynski, Youri, Malhotra-Kumar, Surbhi·2023·Genes

Abstract

Colistin heteroresistance has been identified in several bacterial species, including Escherichia coli and Klebsiella pneumoniae, and may underlie antibiotic therapy failures since it most often goes undetected by conventional antimicrobial susceptibility tests. This study utilizes population analysis profiling (PAP) and time–kill assay for the detection of heteroresistance in K. pneumoniae and for evaluating the association between in vitro regrowth and heteroresistance. The mechanisms of colistin resistance and the ability of combination therapies to suppress resistance selection were also analysed. In total, 3 (18%) of the 16 colistin-susceptible strains (MIC ≤ 2 mg/L) were confirmed to be heteroresistant to colistin by PAP assay. In contrast to the colistin-susceptible control strains, all three heteroresistant strains showed regrowth when exposed to colistin after 24 h following a rapid bactericidal action. Colistin resistance in all the resistant subpopulations was due to the disruption of the mgrB gene by various insertion elements such as ISKpn14 of the IS1 family and IS903B of the IS5 family. Colistin combined with carbapenems (imipenem, meropenem), aminoglycosides (amikacin, gentamicin) or tigecycline was found to elicit in vitro synergistic effects against these colistin heteroresistant strains. Our experimental results showcase the potential of combination therapies for treatment of K. pneumoniae infections associated with colistin heteroresistance.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3390/genes14071426

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • For bacteria, combination of several antibiotics serves as preferred strategy.

    “For bacteria, a combination of several antibiotics serves as the preferred strategy [28,174,175,176].”

    From Insight into the Mechanisms and Clinical Relevance of Antifungal Heteroresistance (2025) · cites this paper as [176]

    The Conclusions report a potential benefit of combining colistin with other antibiotics for colistin-heteroresistant K. pneumoniae. The Discussion suggests such combinations may be safer than colistin alone, but calls for in vivo studies. The paper does not establish antibiotic combinations as the preferred strategy for bacteria generally. (LLM, conf=0.86)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 33

  1. [1]Effah C.Y. Sun T. Liu S. Wu Y. Klebsiella pneumoniae: An increasing threat to public health Ann. Clin. Microbiol. Antimicrob. 2020 19 1 10.1186/s12941-019-0343-8 31918737 PMC7050612 · DOI · Paper page
  2. [2]Ustundag G. Oncel E.K. Sahin A. Keles Y.E. Aksay A.K. Ciftdogan D.Y. Colistin Treatment for Multidrug-Resistant Gram-Negative Infections in Children: Caution Required for Nephrotoxicity Sisli. Etfal Hastan Tip. Bul. 2022 56 427 434 10.14744/SEMB.2021.69851 36304221 PMC9580973 · DOI
  3. [4]Berglund B. Acquired Resistance to Colistin via Chromosomal And Plasmid-Mediated Mechanisms in Klebsiella pneumoniae Infect. Microbes Dis. 2019 1 10 19 10.1097/IM9.0000000000000002 · DOI
  4. [5]El-Sayed Ahmed M.A.E.G. Zhong L.-L. Shen C. Yang Y. Doi Y. Tian G.-B. Colistin and its role in the Era of antibiotic resistance: An extended review (2000–2019) Emerg. Microbes Infect. 2020 9 868 885 10.1080/22221751.2020.1754133 32284036 PMC7241451 · DOI
  5. [6]Poirel L. Jayol A. Nordmann P. Polymyxins: Antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes Clin. Microbiol. Rev. 2017 30 557 596 10.1128/CMR.00064-16 28275006 PMC5355641 · DOI
  6. [7]Band V.I. Weiss D.S. Heteroresistance: A cause of unexplained antibiotic treatment failure? PLoS Pathog. 2019 15 e1007726 10.1371/journal.ppat.1007726 31170271 PMC6553791 · DOI
  7. [8]Jeannot K. Bolard A. Plésiat P. Resistance to polymyxins in Gram-negative organisms Int. J. Antimicrob. Agents 2017 49 526 535 10.1016/j.ijantimicag.2016.11.029 28163137 · DOI
  8. [9]Umair M. Hassan B. Farzana R. Ali Q. Sands K. Mathias J. Afegbua S. Haque M.N. Walsh T.R. Mohsin M. International manufacturing and trade in colistin, its implications in colistin resistance and One Health global policies: A microbiological, economic, and anthropological study Lancet Microbe 2023 4 e264 e276 10.1016/S2666-5247(22)00387-1 36931291 · DOI
  9. [10]Aghapour Z. Gholizadeh P. Ganbarov K. Bialvaei A.Z. Mahmood S.S. Tanomand A. Yousefi M. Asgharzadeh M. Yousefi B. Kafil H.S. Molecular mechanisms related to colistin resistance in Enterobacteriaceae Infect. Drug Resist. 2019 12 965 975 10.2147/IDR.S199844 31190901 PMC6519339 · DOI
  10. [11]Lepe J. Martínez-Martínez L. Resistance mechanisms in Gram-negative bacteria Med. Intensiv. 2022 46 392 402 10.1016/j.medin.2022.02.004 35660283 · DOI
  11. [12]Fordham S.M.E. Mantzouratou A. Sheridan E. Prevalence of insertion sequence elements in plasmids relating to mgrB gene disruption causing colistin resistance in Klebsiella pneumoniae Microbiologyopen 2022 11 e1262 10.1002/mbo3.1262 35212479 PMC8796155 · DOI
  12. [13]Cannatelli A. Giani T. D’Andrea M.M. Di Pilato V. Arena F. Conte V. Tryfinopoulou K. Vatopoulos A. Rossolini G.M. MgrB Inactivation Is a Common Mechanism of Colistin Resistance in KPC-Producing Klebsiella pneumoniae of Clinical Origin Antimicrob. Agents Chemother. 2014 58 5696 5703 10.1128/AAC.03110-14 25022583 PMC4187966 · DOI
  13. [14]Andersson D.I. Nicoloff H. Hjort K. Mechanisms and clinical relevance of bacterial heteroresistance Nat. Rev. Genet. 2019 17 479 496 10.1038/s41579-019-0218-1 31235888 · DOI · Paper page
  14. [15]Ezadi F. Ardebili A. Mirnejad R. Antimicrobial Susceptibility Testing for Polymyxins: Challenges, Issues, and Recommendations J. Clin. Microbiol. 2019 57 e01390-18 10.1128/JCM.01390-18 30541939 PMC6440778 · DOI
  15. [16]Meletis G. Tzampaz E. Sianou E. Tzavaras I. Sofianou D. Colistin heteroresistance in carbapenemase-producing Klebsiella pneumoniae J. Antimicrob. Chemother. 2011 66 946 947 10.1093/jac/dkr007 21393203 · DOI
  16. [17]Roch M. Sierra R. Andrey D.O. Antibiotic heteroresistance in ESKAPE pathogens, from bench to bedside Clin. Microbiol. Infect. 2022 29 320 325 10.1016/j.cmi.2022.10.018 36270588 · DOI
  17. [18]El-Halfawy O.M. Valvano M.A. Antimicrobial Heteroresistance: An Emerging Field in Need of Clarity Clin. Microbiol. Rev. 2015 28 191 207 10.1128/CMR.00058-14 25567227 PMC4284305 · DOI · Paper page
  18. [19]Landman D. Salamera J. Quale J. Irreproducible and Uninterpretable Polymyxin B MICs for Enterobacter cloacae and Enterobacter aerogenes J. Clin. Microbiol. 2013 51 4106 4111 10.1128/JCM.02129-13 24088860 PMC3838098 · DOI
  19. [20]Ni W. Yang D. Guan J. Xi W. Zhou D. Zhao L. Cui J. Xu Y. Gao Z. Liu Y. In vitro and in vivo synergistic effects of tigecycline combined with aminoglycosides on carbapenem-resistant Klebsiella pneumoniae J. Antimicrob. Chemother. 2021 76 2097 2105 10.1093/jac/dkab122 33860309 · DOI
  20. [21]Tian Y. Zhang Q. Wen L. Chen J. Combined effect of Polymyxin B and Tigecycline to overcome Heteroresistance in Carbapenem-Resistant Klebsiella pneumoniae Microbiol. Spectr. 2021 9 e0015221 10.1128/Spectrum.00152-21 34704782 PMC8549724 · DOI · Paper page
  21. [23]Band V.I. Hufnagel D.A. Jaggavarapu S. Sherman E.X. Wozniak J.E. Satola S.W. Farley M.M. Jacob J.T. Burd E.M. Weiss D.S. Antibiotic combinations that exploit heteroresistance to multiple drugs effectively control infection Nat. Microbiol. 2019 4 1627 1635 10.1038/s41564-019-0480-z 31209306 PMC7205309 · DOI
  22. [24]Halaby T. Kucukkose E. Janssen A.B. Rogers M.R.C. Doorduijn D.J. van der Zanden A.G.M. al Naiemi N. Vandenbroucke-Grauls C.M.J.E. van Schaik W. Genomic Characterization of Colistin Heteroresistance in Klebsiella pneumoniae during a Nosocomial Outbreak Antimicrob. Agents Chemother. 2016 60 6837 6843 10.1128/AAC.01344-16 27600049 PMC5075093 · DOI
  23. [25]Poudyal A. Howden B.P. Bell J.M. Gao W. Owen R.J. Turnidge J.D. Nation R.L. Li J. In vitro pharmacodynamics of colistin against multidrug-resistant Klebsiella pneumoniae J. Antimicrob. Chemother. 2008 62 1311 1318 10.1093/jac/dkn425 18922815 · DOI
  24. [26]Benítez-Cano A. Luque S. Sorlí L. Carazo J. Ramos I. Campillo N. Curull V. Sánchez-Font A. Vilaplana C. Horcajada J.P. Intrapulmonary concentrations of meropenem administered by continuous infusion in critically ill patients with nosocomial pneumonia: A randomized pharmacokinetic trial Crit. Care 2020 24 55 10.1186/s13054-020-2763-4 32066497 PMC7026992 · DOI
  25. [27]Erttmann M. Krausse R. Ullmann U. Pharmacokinetics of imipenem in patients undergoing major colon surgery Infection 1990 18 367 371 10.1007/BF01646409 2076910 · DOI
  26. [28]Tsuji B.T. Pogue J.M. Zavascki A.P. Paul M. Daikos G.L. Forrest A. Giacobbe D.R. Viscoli C. Giamarellou H. Karaiskos I. International Consensus Guidelines for the Optimal Use of the Polymyxins: Endorsed by the American College of Clinical Pharmacy (ACCP), European Society of Clinical Microbiology and Infectious Diseases (ESCMID), Infectious Diseases Society of America (IDSA), International Society for Anti-infective Pharmacology (ISAP), Society of Critical Care Medicine (SCCM), and Society of Infectious Diseases Pharmacists (SIDP) Pharmacotherapy 2019 39 10 39 10.1002/phar.2209 30710469 PMC7437259 · DOI
  27. [29]Cheong H.S. Kim S.Y. Wi Y.M. Peck K.R. Ko K.S. Colistin Heteroresistance in Klebsiella Pneumoniae Isolates and Diverse Mutations of PmrAB and PhoPQ in Resistant Subpopulations J. Clin. Med. 2019 8 1444 10.3390/jcm8091444 31514418 PMC6780954 · DOI
  28. [30]Seo J. Wi Y.M. Kim J.M. Kim Y.-J. Ko K.S. Detection of colistin-resistant populations prior to antibiotic exposure in KPC-2-producing Klebsiella pneumoniae clinical isolates J. Microbiol. 2021 59 590 597 10.1007/s12275-021-0610-1 33779958 · DOI
  29. [31]Morales-León F. Lima C.A. González-Rocha G. Opazo-Capurro A. Bello-Toledo H. Colistin Heteroresistance among Extended Spectrum β-lactamases-Producing Klebsiella pneumoniae Microorganisms 2020 8 1279 10.3390/microorganisms8091279 32825799 PMC7569871 · DOI
  30. [32]Bardet L. Baron S. Leangapichart T. Okdah L. Diene S.M. Rolain J.-M. Deciphering Heteroresistance to Colistin in a Klebsiella pneumoniae Isolate from Marseille, France Antimicrob. Agents Chemother. 2017 61 e00356-17 10.1128/AAC.00356-17 28416544 PMC5444162 · DOI
  31. [33]Mmatli M. Mbelle N.M. Maningi N.E. Osei Sekyere J. Emerging Transcriptional and Genomic Mechanisms Mediating Carbapenem and Polymyxin Resistance in Enterobacteriaceae: A Systematic Review of Current Reports mSystems 2020 5 10 1128 10.1128/mSystems.00783-20 33323413 PMC7771540 · DOI
  32. [34]Poirel L. Jayol A. Bontron S. Villegas M.-V. Ozdamar M. Türkoglu S. Nordmann P. The mgrB gene as a key target for acquired resistance to colistin in Klebsiella pneumoniae J. Antimicrob. Chemother. 2015 70 75 80 10.1093/jac/dku323 25190723 · DOI
  33. [35]Tamma P.D. Aitken S.L. A Bonomo R. Mathers A.J. van Duin D. Clancy C.J. Infectious Diseases Society of America 2022 Guidance on the Treatment of Extended-Spectrum β-lactamase Producing Enterobacterales (ESBL-E), Carbapenem-Resistant Enterobacterales (CRE), and Pseudomonas aeruginosa with Difficult-to-Treat Resistance (DTR-P. aeruginosa) Clin. Infect. Dis. 2022 75 187 212 10.1093/cid/ciac268 35439291 PMC9890506 · DOI

Cited by

Sorted by citations

Authors
Rajakani, S. G., Xavier, B. B., Sey, A., Mariem, E. B., Lammens, C., Goossens, H., Glupczynski, Y., & Malhotra-Kumar, S.
Affiliations
  • University of Antwerp (BE)
  • Laboratory of Medical Microbiology, Vaccine & Infectious Disease Institute, University of Antwerp, 2610 Antwerp, Belgium
Venue
Genes
Publisher
MDPI AG
Published
2023-07-10
Volume
14
Issue
7
Pages
1426
ISSN
2073-4425 (ISSN-L)
OpenAlex
W4383877113
Cited by
17
References
2
Citations by year
2026: 5 · 2025: 6 · 2024: 6
FWCI
1.45
Type
journal article
Language
en
Open access
Locations
  • Genes (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • University of Groningen research database (University of Groningen / Centre for Information Technology) (submittedVersion, cc-by)
Funders
  • University of Antwerp BOF Doctoral Project Funds (40179)
  • University of Antwerp Methusalem funding (40179)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Bacterial Identification and Susceptibility Testing
Keywords
colistin heteroresistance, Klebsiella pneumoniae, antibiotic synergy, combination therapy, population analysis profiling, time-kill assay, regrowth, insertion elements, IS1, IS5, carbapenems, aminoglycosides, tigecycline
MeSH terms
Meropenem, Tigecycline, Anti-Bacterial Agents, Colistin, Klebsiella pneumoniae

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review