Cited by 16RNA and protein synthesis mechanismsPI3K/AKT/mTOR signaling in cancerGenetics, Aging, and Longevity in Model Organisms

The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.

Emerging Role of GCN1 in Disease and Homeostasis

Open access
Tatara, Yota, Kasai, Shuya, Kokubu, Daichi, Tsujita, Tadayuki, Mimura, Junsei, Itoh, Ken·2024·International Journal of Molecular Sciences

Published version of a preprint

Abstract

GCN1 is recognized as a factor that is essential for the activation of GCN2, which is a sensor of amino acid starvation. This function is evolutionarily conserved from yeast to higher eukaryotes. However, recent studies have revealed non-canonical functions of GCN1 that are independent of GCN2, such as its participation in cell proliferation, apoptosis, and the immune response, beyond the borders of species. Although it is known that GCN1 and GCN2 interact with ribosomes to accomplish amino acid starvation sensing, recent studies have reported that GCN1 binds to disomes (i.e., ribosomes that collide each other), thereby regulating both the co-translational quality control and stress response. We propose that GCN1 regulates ribosome-mediated signaling by dynamically changing its partners among RWD domain-possessing proteins via unknown mechanisms. We recently demonstrated that GCN1 is essential for cell proliferation and whole-body energy regulation in mice. However, the manner in which ribosome-initiated signaling via GCN1 is related to various physiological functions warrants clarification. GCN1-mediated mechanisms and its interaction with other quality control and stress response signals should be important for proteostasis during aging and neurodegenerative diseases, and may be targeted for drug development.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3390/ijms25052998

Cites

5 of 5 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 143

  1. Castilho, 2014, Keeping the eIF2 alpha kinase Gcn2 in check, Biochim. Biophys. Acta, 1843, 1948, 10.1016/j.bbamcr.2014.04.006 · DOI
  2. Koryga, 2016, The integrated stress response, EMBO Rep., 17, 1374, 10.15252/embr.201642195 · DOI · Paper page
  3. Taniuchi, 2016, Integrated stress response of vertebrates is regulated by four eIF2alpha kinases, Sci. Rep., 6, 32886, 10.1038/srep32886 · DOI
  4. Baird, 2012, Eukaryotic initiation factor 2 phosphorylation and translational control in metabolism, Adv. Nutr., 3, 307, 10.3945/an.112.002113 · DOI
  5. Maurin, 2013, The eIF2alpha/ATF4 pathway is essential for stress-induced autophagy gene expression, Nucleic Acids Res., 41, 7683, 10.1093/nar/gkt563 · DOI · Paper page
  6. Iurlaro, 2016, Cell death induced by endoplasmic reticulum stress, FEBS J., 283, 2640, 10.1111/febs.13598 · DOI
  7. Pitale, 2017, Neurodegeneration: Keeping ATF4 on a Tight Leash, Front. Cell Neurosci., 11, 410, 10.3389/fncel.2017.00410 · DOI
  8. Lee, 2021, Poly(U)-specific endoribonuclease ENDOU promotes translation of human CHOP mRNA by releasing uORF element-mediated inhibition, EMBO J., 40, e104123, 10.15252/embj.2019104123 · DOI
  9. Anda, S., Zach, R., and Grallert, B. (2017). Activation of Gcn2 in response to different stresses. PLoS ONE, 12. · DOI
  10. Yamazaki, H., Kasai, S., Mimura, J., Ye, P., Inose-Maruyama, A., Tanji, K., Wakabayashi, K., Mizuno, S., Sugiyama, F., and Takahashi, S. (2020). Ribosome binding protein GCN1 regulates the cell cycle and cell proliferation and is essential for the embryonic development of mice. PLoS Genet., 16. · DOI
  11. Ye, 2010, The GCN2-ATF4 pathway is critical for tumour cell survival and proliferation in response to nutrient deprivation, EMBO J., 29, 2082, 10.1038/emboj.2010.81 · DOI
  12. Deng, 2002, Activation of GCN2 in UV-irradiated cells inhibits translation, Curr. Biol., 12, 1279, 10.1016/S0960-9822(02)01037-0 · DOI
  13. Robert, 2009, Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2, Chem. Biol. Drug Des., 74, 57, 10.1111/j.1747-0285.2009.00827.x · DOI
  14. Andrade, 2001, Comparison of ARM and HEAT protein repeats, J. Mol. Biol., 309, 1, 10.1006/jmbi.2001.4624 · DOI
  15. Varadi, 2022, AlphaFold Protein Structure Database: Massively expanding the structural coverage of protein-sequence space with high-accuracy models, Nucleic Acids Res., 50, D439, 10.1093/nar/gkab1061 · DOI · Paper page
  16. Pochopien, 2021, Structure of Gcn1 bound to stalled and colliding 80S ribosomes, Proc. Natl. Acad. Sci. USA, 118, e2022756118, 10.1073/pnas.2022756118 · DOI
  17. Nameki, 2004, Solution structure of the RWD domain of the mouse GCN2 protein, Protein Sci., 13, 2089, 10.1110/ps.04751804 · DOI
  18. Rakesh, R., Krishnan, R., Sattlegger, E., and Srinivasan, N. (2017). Recognition of a structural domain (RWDBD) in Gcn1 proteins that interacts with the RWD domain containing proteins. Biol. Direct, 12. · DOI
  19. Sattlegger, 2005, Polyribosome binding by GCN1 is required for full activation of eukaryotic translation initiation factor 2alpha kinase GCN2 during amino acid starvation, J. Biol. Chem., 280, 16514, 10.1074/jbc.M414566200 · DOI
  20. Marton, 1995, GCN20, a novel ATP binding cassette protein, and GCN1 reside in a complex that mediates activation of the eIF-2 alpha kinase GCN2 in amino acid-starved cells, EMBO J., 14, 3184, 10.1002/j.1460-2075.1995.tb07321.x · DOI
  21. Marton, 1997, Evidence that GCN1 and GCN20, translational regulators of GCN4, function on elongating ribosomes in activation of eIF2alpha kinase GCN2, Mol. Cell Biol., 17, 4474, 10.1128/MCB.17.8.4474 · DOI
  22. Hinnebusch, 2005, Translational regulation of GCN4 and the general amino acid control of yeast, Annu. Rev. Microbiol., 59, 407, 10.1146/annurev.micro.59.031805.133833 · DOI
  23. Tyzack, 2000, ABC50 interacts with eukaryotic initiation factor 2 and associates with the ribosome in an ATP-dependent manner, J. Biol. Chem., 275, 34131, 10.1074/jbc.M002868200 · DOI
  24. Hirose, T., and Horvitz, H.R. (2014). The translational regulators GCN-1 and ABCF-3 act together to promote apoptosis in C. elegans. PLoS Genet., 10. · DOI
  25. Murina, 2019, ABCF ATPases Involved in Protein Synthesis, Ribosome Assembly and Antibiotic Resistance: Structural and Functional Diversification across the Tree of Life, J. Mol. Biol., 431, 3568, 10.1016/j.jmb.2018.12.013 · DOI
  26. Brown, 2016, Ribosome-dependent activation of stringent control, Nature, 534, 277, 10.1038/nature17675 · DOI
  27. Kim, 2020, Aminoacyl-tRNA synthetase inhibition activates a pathway that branches from the canonical amino acid response in mammalian cells, Proc. Natl. Acad. Sci. USA, 117, 8900, 10.1073/pnas.1913788117 · DOI
  28. Sundrud, 2009, Halofuginone inhibits TH17 cell differentiation by activating the amino acid starvation response, Science, 324, 1334, 10.1126/science.1172638 · DOI
  29. De Vito, A., Lazzaro, M., Palmisano, I., Cittaro, D., Riba, M., Lazarevic, D., Bannai, M., Gabellini, D., and Schiaffino, M.V. (2018). Amino acid deprivation triggers a novel GCN2-independent response leading to the transcriptional reactivation of non-native DNA sequences. PLoS ONE, 13. · DOI
  30. Palmisano, 2012, Amino acid starvation induces reactivation of silenced transgenes and latent HIV-1 provirus via down-regulation of histone deacetylase 4 (HDAC4), Proc. Natl. Acad. Sci. USA, 109, E2284, 10.1073/pnas.1202174109 · DOI
  31. Izquierdo, 2018, Arabidopsis nonresponding to oxylipins locus NOXY7 encodes a yeast GCN1 homolog that mediates noncanonical translation regulation and stress adaptation, Plant Cell Environ., 41, 1438, 10.1111/pce.13182 · DOI
  32. Doerks, 2002, Systematic identification of novel protein domain families associated with nuclear functions, Genome Res., 12, 47, 10.1101/gr.203201 · DOI
  33. Pereira, 2005, IMPACT, a protein preferentially expressed in the mouse brain, binds GCN1 and inhibits GCN2 activation, J. Biol. Chem., 280, 28316, 10.1074/jbc.M408571200 · DOI
  34. Waller, 2012, Evidence that Yih1 resides in a complex with ribosomes, FEBS J., 279, 1761, 10.1111/j.1742-4658.2012.08553.x · DOI
  35. Wout, 2009, Saccharomyces cerevisiae Rbg1 protein and its binding partner Gir2 interact on Polyribosomes with Gcn1, Eukaryot. Cell, 8, 1061, 10.1128/EC.00356-08 · DOI
  36. Ishikawa, 2013, Cell growth control by stable Rbg2/Gir2 complex formation under amino acid starvation, Genes. Cells, 18, 859, 10.1111/gtc.12082 · DOI
  37. Oltion, 2023, An E3 ligase network engages GCN1 to promote the degradation of translation factors on stalled ribosomes, Cell, 186, 346, 10.1016/j.cell.2022.12.025 · DOI
  38. Wu, 2020, Ribosome Collisions Trigger General Stress Responses to Regulate Cell Fate, Cell, 182, 404, 10.1016/j.cell.2020.06.006 · DOI
  39. Lageix, S., Zhang, J., Rothenburg, S., and Hinnebusch, A.G. (2015). Interaction between the tRNA-binding and C-terminal domains of Yeast Gcn2 regulates kinase activity in vivo. PLoS Genet., 11. · DOI
  40. Wek, 1995, The histidyl-tRNA synthetase-related sequence in the eIF-2 alpha protein kinase GCN2 interacts with tRNA and is required for activation in response to starvation for different amino acids, Mol. Cell Biol., 15, 4497, 10.1128/MCB.15.8.4497 · DOI
  41. Zaborske, 2009, Genome-wide analysis of tRNA charging and activation of the eIF2 kinase Gcn2p, J. Biol. Chem., 284, 25254, 10.1074/jbc.M109.000877 · DOI
  42. Gobert, 2005, Translational control of hippocampal synaptic plasticity and memory by the eIF2alpha kinase GCN2, Nature, 436, 1166, 10.1038/nature03897 · DOI
  43. Maurin, 2005, The GCN2 kinase biases feeding behavior to maintain amino acid homeostasis in omnivores, Cell Metab., 1, 273, 10.1016/j.cmet.2005.03.004 · DOI
  44. Eyries, 2014, EIF2AK4 mutations cause pulmonary veno-occlusive disease, a recessive form of pulmonary hypertension, Nat. Genet., 46, 65, 10.1038/ng.2844 · DOI
  45. Hajj, 2013, IMPACT is a developmentally regulated protein in neurons that opposes the eukaryotic initiation factor 2α kinase GCN2 in the modulation of neurite outgrowth, J. Biol. Chem., 288, 10860, 10.1074/jbc.M113.461970 · DOI
  46. Kaplan, 2017, Small-Molecule Stabilization of 14-3-3 Protein-Protein Interactions Stimulates Axon Regeneration, Neuron, 93, 1082, 10.1016/j.neuron.2017.02.018 · DOI
  47. Sattlegger, 2004, YIH1 is an actin-binding protein that inhibits protein kinase GCN2 and impairs general amino acid control when overexpressed, J. Biol. Chem., 279, 29952, 10.1074/jbc.M404009200 · DOI
  48. Cambiaghi, 2014, Evolutionarily conserved IMPACT impairs various stress responses that require GCN1 for activating the eIF2 kinase GCN2, Biochem. Biophys. Res. Commun., 443, 592, 10.1016/j.bbrc.2013.12.021 · DOI
  49. Ferraz, R.C., Camara, H., De-Souza, E.A., Pinto, S., Pinca, A.P., Silva, R.C., Sato, V.N., Castilho, B.A., and Mori, M.A. (2016). IMPACT is a GCN2 inhibitor that limits lifespan in Caenorhabditis elegans. BMC Biol., 14. · DOI
  50. Daugeron, 2011, The highly conserved eukaryotic DRG factors are required for efficient translation in a manner redundant with the putative RNA helicase Slh1, Nucleic. Acids Res., 39, 2221, 10.1093/nar/gkq898 · DOI
  51. Ishikawa, 2005, Identification of DRG family regulatory proteins (DFRPs): Specific regulation of DRG1 and DRG2, Genes Cells, 10, 139, 10.1111/j.1365-2443.2005.00825.x · DOI
  52. Westrip, 2021, Developmentally regulated GTPases: Structure, function and roles in disease, Cell Mol. Life Sci., 78, 7219, 10.1007/s00018-021-03961-0 · DOI
  53. Kasturi, 2023, Mechanisms of readthrough mitigation reveal principles of GCN1-mediated translational quality control, Cell, 186, 3227, 10.1016/j.cell.2023.05.035 · DOI
  54. Xu, 2009, Regulation of androgen receptor transcriptional activity and specificity by RNF6-induced ubiquitination, Cancer Cell, 15, 270, 10.1016/j.ccr.2009.02.021 · DOI
  55. Alontaga, 2015, RWD Domain as an E2 (Ubc9)-Interaction Module, J. Biol. Chem., 290, 16550, 10.1074/jbc.M115.644047 · DOI
  56. Shan, 2012, RSUME is implicated in HIF-1-induced VEGF-A production in pituitary tumour cells, Endocr. Relat. Cancer, 19, 13, 10.1530/ERC-11-0211 · DOI
  57. Gerez, J., Fuertes, M., Tedesco, L., Silberstein, S., Sevlever, G., Paez-Pereda, M., Holsboer, F., Turjanski, A.G., and Arzt, E. (2013). In silico structural and functional characterization of the RSUME splice variants. PLoS ONE, 8. · DOI
  58. Druker, 2013, RSUME enhances glucocorticoid receptor SUMOylation and transcriptional activity, Mol. Cell Biol., 33, 2116, 10.1128/MCB.01470-12 · DOI
  59. Kim, 2022, Canary in a coal mine: Collided ribosomes as sensors of cellular conditions, Trends Biochem. Sci., 47, 82, 10.1016/j.tibs.2021.09.001 · DOI
  60. De, 2022, A comprehensive coverage insurance for cells: Revealing links between ribosome collisions, stress responses and mRNA surveillance, RNA Biol., 19, 609, 10.1080/15476286.2022.2065116 · DOI
  61. Gavin, 2006, Proteome survey reveals modularity of the yeast cell machinery, Nature, 440, 631, 10.1038/nature04532 · DOI
  62. Hermjakob, 2004, IntAct: An open source molecular interaction database, Nucleic Acids Res., 32, D452, 10.1093/nar/gkh052 · DOI
  63. Gurzeler, 2023, Drug-induced eRF1 degradation promotes readthrough and reveals a new branch of ribosome quality control, Cell Rep., 42, 113056, 10.1016/j.celrep.2023.113056 · DOI
  64. Meydan, 2021, A cellular handbook for collided ribosomes: Surveillance pathways and collision types, Curr. Genet., 67, 19, 10.1007/s00294-020-01111-w · DOI · Paper page
  65. Garzia, 2017, The E3 ubiquitin ligase and RNA-binding protein ZNF598 orchestrates ribosome quality control of premature polyadenylated mRNAs, Nat. Commun., 8, 16056, 10.1038/ncomms16056 · DOI
  66. Matsuo, 2017, Ubiquitination of stalled ribosome triggers ribosome-associated quality control, Nat. Commun., 8, 159, 10.1038/s41467-017-00188-1 · DOI
  67. Juszkiewicz, 2020, The ASC-1 Complex Disassembles Collided Ribosomes, Mol. Cell, 79, 603, 10.1016/j.molcel.2020.06.006 · DOI · Paper page
  68. Filbeck, 2022, Ribosome-associated quality-control mechanisms from bacteria to humans, Mol. Cell, 82, 1451, 10.1016/j.molcel.2022.03.038 · DOI
  69. Hickey, 2020, GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control, Mol. Cell, 79, 950, 10.1016/j.molcel.2020.07.007 · DOI
  70. Sinha, 2020, EDF1 coordinates cellular responses to ribosome collisions, Elife, 9, e58828, 10.7554/eLife.58828 · DOI
  71. Juszkiewicz, 2020, Ribosome collisions trigger cis-acting feedback inhibition of translation initiation, Elife, 9, e60038, 10.7554/eLife.60038 · DOI
  72. Yan, 2021, Ribosome quality control antagonizes the activation of the integrated stress response on colliding ribosomes, Mol. Cell, 81, 614, 10.1016/j.molcel.2020.11.033 · DOI
  73. Fedry, J., Silva, J., Vanevic, M., Fronik, S., Mechulam, Y., Schmitt, E., des Georges, A., Faller, W., and Forster, F. (2023). Visualization of translation reorganization upon persistent collision stress in mammalian cells. bioRxiv. · DOI
  74. Masson, 2019, Towards a model of GCN2 activation, Biochem. Soc. Trans., 47, 1481, 10.1042/BST20190331 · DOI
  75. Darnell, 2018, Translational Control through Differential Ribosome Pausing during Amino Acid Limitation in Mammalian Cells, Mol. Cell, 71, 229, 10.1016/j.molcel.2018.06.041 · DOI
  76. Stoneley, 2022, Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress, Mol. Cell, 82, 1557, 10.1016/j.molcel.2022.01.019 · DOI
  77. Wu, 2019, High-Resolution Ribosome Profiling Defines Discrete Ribosome Elongation States and Translational Regulation during Cellular Stress, Mol. Cell, 73, 959, 10.1016/j.molcel.2018.12.009 · DOI
  78. Lee, 2015, Gcn1 contacts the small ribosomal protein Rps10, which is required for full activation of the protein kinase Gcn2, Biochem J., 466, 547, 10.1042/BJ20140782 · DOI
  79. Snieckute, 2022, Ribosome stalling is a signal for metabolic regulation by the ribotoxic stress response, Cell Metab., 34, 2036, 10.1016/j.cmet.2022.10.011 · DOI
  80. Li, 2022, Mitochondrial ROS-mediated ribosome stalling and GCN2 activation are partially involved in 1-nitropyrene-induced steroidogenic inhibition in testes, Environ. Int., 167, 107393, 10.1016/j.envint.2022.107393 · DOI
  81. Zhao, 2023, RNF14-dependent atypical ubiquitylation promotes translation-coupled resolution of RNA-protein crosslinks, Mol. Cell, 83, 4290, 10.1016/j.molcel.2023.10.012 · DOI
  82. Ryder, 2023, Nitric oxide-induced ribosome collision activates ribosomal surveillance mechanisms, Cell Death Dis., 14, 467, 10.1038/s41419-023-05997-5 · DOI
  83. Inglis, 2019, Activation of GCN2 by the ribosomal P-stalk, Proc. Natl. Acad. Sci. USA, 116, 4946, 10.1073/pnas.1813352116 · DOI
  84. Farooq, Z., Kusuma, F., Burke, P., Dufour, C.R., Lee, D., Tabatabaei, N., Toboz, P., Radovani, E., Greenblatt, J.F., and Rehman, J. (2022). The amino acid sensor GCN2 suppresses terminal oligopyrimidine (TOP) mRNA translation via La-related protein 1 (LARP1). J. Biol. Chem., 298. · DOI
  85. Iordanov, 1997, Ribotoxic stress response: Activation of the stress-activated protein kinase JNK1 by inhibitors of the peptidyl transferase reaction and by sequence-specific RNA damage to the alpha-sarcin/ricin loop in the 28S rRNA, Mol. Cell Biol., 17, 3373, 10.1128/MCB.17.6.3373 · DOI
  86. Vind, 2020, Ribosomal stress-surveillance: Three pathways is a magic number, Nucleic Acids Res., 48, 10648, 10.1093/nar/gkaa757 · DOI
  87. Wang, 2005, Complete inhibition of anisomycin and UV radiation but not cytokine induced JNK and p38 activation by an aryl-substituted dihydropyrrolopyrazole quinoline and mixed lineage kinase 7 small interfering RNA, J. Biol. Chem., 280, 19298, 10.1074/jbc.M413059200 · DOI
  88. Jandhyala, 2008, ZAK: A MAP3Kinase that transduces Shiga toxin- and ricin-induced proinflammatory cytokine expression, Cell Microbiol., 10, 1468, 10.1111/j.1462-5822.2008.01139.x · DOI
  89. Jandhyala, D.M., Wong, J., Mantis, N.J., Magun, B.E., Leong, J.M., and Thorpe, C.M. (2016). A Novel Zak Knockout Mouse with a Defective Ribotoxic Stress Response. Toxins, 8. · DOI
  90. Sauter, 2010, ZAK is required for doxorubicin, a novel ribotoxic stressor, to induce SAPK activation and apoptosis in HaCaT cells, Cancer Biol. Ther., 10, 258, 10.4161/cbt.10.3.12367 · DOI
  91. Vind, 2020, ZAKalpha Recognizes Stalled Ribosomes through Partially Redundant Sensor Domains, Mol. Cell, 78, 700, 10.1016/j.molcel.2020.03.021 · DOI
  92. Robinson, 2022, ZAKalpha-driven ribotoxic stress response activates the human NLRP1 inflammasome, Science, 377, 328, 10.1126/science.abl6324 · DOI
  93. Muela-Zarzuela, I., Suarez-Rivero, J.M., Gallardo-Orihuela, A., Wang, C., Izawa, K., de Gregorio-Procopio, M., Couillin, I., Ryffel, B., Kitaura, J., and Sanz, A. (2023). NLRP1 inflammasome modulates senescence and senescence-associated secretory phenotype. bioRxiv. · DOI
  94. Snieckute, 2023, ROS-induced ribosome impairment underlies ZAKalpha-mediated metabolic decline in obesity and aging, Science, 382, eadf3208, 10.1126/science.adf3208 · DOI
  95. Doma, 2006, Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation, Nature, 440, 561, 10.1038/nature04530 · DOI
  96. Dimitrova, 2009, Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome, J. Biol. Chem., 284, 10343, 10.1074/jbc.M808840200 · DOI
  97. Letzring, 2013, Translation of CGA codon repeats in yeast involves quality control components and ribosomal protein L1, RNA, 19, 1208, 10.1261/rna.039446.113 · DOI
  98. Simms, 2014, An active role for the ribosome in determining the fate of oxidized mRNA, Cell Rep., 9, 1256, 10.1016/j.celrep.2014.10.042 · DOI
  99. Brandman, 2016, Ribosome-associated protein quality control, Nat. Struct. Mol. Biol., 23, 7, 10.1038/nsmb.3147 · DOI
  100. Gamble, 2016, Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast, Cell, 166, 679, 10.1016/j.cell.2016.05.070 · DOI
  101. Joazeiro, 2017, Ribosomal Stalling During Translation: Providing Substrates for Ribosome-Associated Protein Quality Control, Annu. Rev. Cell Dev. Biol., 33, 343, 10.1146/annurev-cellbio-111315-125249 · DOI
  102. Collart, 2020, Ribosome pausing, a dangerous necessity for co-translational events, Nucleic Acids Res., 48, 1043, 10.1093/nar/gkz763 · DOI
  103. Lyu, 2021, Codon usage and protein length-dependent feedback from translation elongation regulates translation initiation and elongation speed, Nucleic Acids Res., 49, 9404, 10.1093/nar/gkab729 · DOI
  104. Lim, H.R., Vo, M.T., Kim, D.J., Lee, U.H., Yoon, J.H., Kim, H.J., Kim, J., Kim, S.R., Lee, J.Y., and Yang, C.H. (2019). DRG2 Deficient Mice Exhibit Impaired Motor Behaviors with Reduced Striatal Dopamine Release. Int. J. Mol. Sci., 21. · DOI
  105. Houston, 2022, Frameshifting at collided ribosomes is modulated by elongation factor eEF3 and by integrated stress response regulators Gcn1 and Gcn20, RNA, 28, 320, 10.1261/rna.078964.121 · DOI
  106. Schuller, 2017, eIF5A Functions Globally in Translation Elongation and Termination, Mol. Cell, 66, 194, 10.1016/j.molcel.2017.03.003 · DOI
  107. Tesina, 2023, Molecular basis of eIF5A-dependent CAT tailing in eukaryotic ribosome-associated quality control, Mol. Cell, 83, 607, 10.1016/j.molcel.2023.01.020 · DOI
  108. Zeng, 2021, Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells, Cell Rep., 37, 109877, 10.1016/j.celrep.2021.109877 · DOI
  109. Kriachkov, V., Ormsby, A.R., Kusnadi, E.P., McWilliam, H.E.G., Mintern, J.D., Amarasinghe, S.L., Ritchie, M.E., Furic, L., and Hatters, D.M. (2023). Arginine-rich C9ORF72 ALS proteins stall ribosomes in a manner distinct from a canonical ribosome-associated quality control substrate. J. Biol. Chem., 299. · DOI
  110. Seo, 2009, Atf4 regulates obesity, glucose homeostasis, and energy expenditure, Diabetes, 58, 2565, 10.2337/db09-0335 · DOI
  111. Kanno, 2020, GCN2 regulates pancreatic β cell mass by sensing intracellular amino acid levels, JCI Insight, 5, e128820, 10.1172/jci.insight.128820 · DOI
  112. Liu, 2018, GCN2 deficiency protects against high fat diet induced hepatic steatosis and insulin resistance in mice, Biochim. Biophys. Acta Mol. Basis Dis., 1864, 3257, 10.1016/j.bbadis.2018.07.012 · DOI
  113. Bjorkman, S.H., Marti, A., Jena, J., Garcia Pena, L.M., Weatherford, E.T., Kato, K., Koneru, J., Chen, J., Sood, A., and Potthoff, M.J. (2023). ATF4 Expression in Thermogenic Adipocytes is Required for Cold-Induced Thermogenesis in Mice via FGF21-Independent Mechanisms. bioRxiv. · DOI
  114. Miyake, 2021, Integrated stress response regulates GDF15 secretion from adipocytes, preferentially suppresses appetite for a high-fat diet and improves obesity, iScience, 24, 103448, 10.1016/j.isci.2021.103448 · DOI
  115. Yuan, J., Li, F., Shen, X., Gao, J., Yu, Z., Luo, K., Cui, B., and Lu, Z. (2022). Genetic and Pharmacological Inhibition of GCN2 Ameliorates Hyperglycemia and Insulin Resistance in Type 2 Diabetic Mice. Antioxidants, 11. · DOI
  116. Yuan, J., Yu, Z., Gao, J., Luo, K., Shen, X., Cui, B., and Lu, Z. (2022). Inhibition of GCN2 alleviates hepatic steatosis and oxidative stress in obese mice: Involvement of NRF2 regulation. Redox Biol., 49. · DOI
  117. Dehwah, 2010, CDKAL1 and type 2 diabetes: A global meta-analysis, Genet. Mol. Res., 9, 1109, 10.4238/vol9-2gmr802 · DOI
  118. Wei, 2011, Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice, J. Clin. Invest., 121, 3598, 10.1172/JCI58056 · DOI
  119. Takahashi, 2017, Reactive sulfur species regulate tRNA methylthiolation and contribute to insulin secretion, Nucleic Acids Res., 45, 435, 10.1093/nar/gkw745 · DOI
  120. Miyake, 2009, Construction of a prediction model for type 2 diabetes mellitus in the Japanese population based on 11 genes with strong evidence of the association, J. Hum. Genet., 54, 236, 10.1038/jhg.2009.17 · DOI
  121. Kanno, 2015, Compensatory hyperinsulinemia in high-fat diet-induced obese mice is associated with enhanced insulin translation in islets, Biochem. Biophys. Res. Commun., 458, 681, 10.1016/j.bbrc.2015.02.024 · DOI
  122. Kitakaze, 2021, ATF4-mediated transcriptional regulation protects against β-cell loss during endoplasmic reticulum stress in a mouse model, Mol. Metab., 54, 101338, 10.1016/j.molmet.2021.101338 · DOI
  123. Szabat, 2016, Reduced Insulin Production Relieves Endoplasmic Reticulum Stress and Induces β Cell Proliferation, Cell Metab., 23, 179, 10.1016/j.cmet.2015.10.016 · DOI
  124. Liu, J., Kasai, S., Tatara, Y., Yamazaki, H., Mimura, J., Mizuno, S., Sugiyama, F., Takahashi, S., Sato, T., and Ozaki, T. (2022). Inducible Systemic Gcn1 Deletion in Mice Leads to Transient Body Weight Loss upon Tamoxifen Treatment Associated with Decrease of Fat and Liver Glycogen Storage. Int. J. Mol. Sci., 23. · DOI
  125. Stein, 2022, Ageing exacerbates ribosome pausing to disrupt cotranslational proteostasis, Nature, 601, 637, 10.1038/s41586-021-04295-4 · DOI
  126. Chen, 2020, Premature termination codon readthrough in Drosophila varies in a developmental and tissue-specific manner, Sci. Rep., 10, 8485, 10.1038/s41598-020-65348-8 · DOI
  127. Zhu, 2020, Ribosome Recycling by ABCE1 Links Lysosomal Function and Iron Homeostasis to 3′ UTR-Directed Regulation and Nonsense-Mediated Decay, Cell Rep., 32, 107895, 10.1016/j.celrep.2020.107895 · DOI
  128. Shen, 2015, Protein synthesis. Rqc2p and 60S ribosomal subunits mediate mRNA-independent elongation of nascent chains, Science, 347, 75, 10.1126/science.1259724 · DOI
  129. Wu, 2019, MISTERMINATE Mechanistically Links Mitochondrial Dysfunction with Proteostasis Failure, Mol. Cell, 75, 835, 10.1016/j.molcel.2019.06.031 · DOI
  130. Gehrke, 2015, PINK1 and Parkin control localized translation of respiratory chain component mRNAs on mitochondria outer membrane, Cell Metab., 21, 95, 10.1016/j.cmet.2014.12.007 · DOI
  131. Martin, 2020, NEMF mutations that impair ribosome-associated quality control are associated with neuromuscular disease, Nat. Commun., 11, 4625, 10.1038/s41467-020-18327-6 · DOI
  132. Sudmant, 2018, Widespread Accumulation of Ribosome-Associated Isolated 3′ UTRs in Neuronal Cell Populations of the Aging Brain, Cell Rep., 25, 2447, 10.1016/j.celrep.2018.10.094 · DOI
  133. Li, 2020, Quality-control mechanisms targeting translationally stalled and C-terminally extended poly(GR) associated with ALS/FTD, Proc. Natl. Acad. Sci. USA, 117, 25104, 10.1073/pnas.2005506117 · DOI
  134. Rimal, 2021, Inefficient quality control of ribosome stalling during APP synthesis generates CAT-tailed species that precipitate hallmarks of Alzheimer’s disease, Acta Neuropathol. Commun., 9, 169, 10.1186/s40478-021-01268-6 · DOI
  135. Tatara, 2023, Multiomics and artificial intelligence enabled peripheral blood-based prediction of amnestic mild cognitive impairment, Curr. Res. Transl. Med., 71, 103367
  136. Sorrentino, 2017, Enhancing mitochondrial proteostasis reduces amyloid-β proteotoxicity, Nature, 552, 187, 10.1038/nature25143 · DOI · Paper page
  137. Fessler, 2020, A pathway coordinated by DELE1 relays mitochondrial stress to the cytosol, Nature, 579, 433, 10.1038/s41586-020-2076-4 · DOI
  138. Guo, 2020, Mitochondrial stress is relayed to the cytosol by an OMA1-DELE1-HRI pathway, Nature, 579, 427, 10.1038/s41586-020-2078-2 · DOI · Paper page
  139. Fessler, 2022, DELE1 tracks perturbed protein import and processing in human mitochondria, Nat. Commun., 13, 1853, 10.1038/s41467-022-29479-y · DOI
  140. Sekine, Y., Houston, R., Fessler, E., Jae, L.T., Narendra, D.P., and Sekine, S. (2022). A mitochondrial iron-sensing pathway regulated by DELE1. bioRxiv. · DOI
  141. Wang, 2016, Mitochondrial dysfunction enhances cisplatin resistance in human gastric cancer cells via the ROS-activated GCN2-eIF2alpha-ATF4-xCT pathway, Oncotarget, 7, 74132, 10.18632/oncotarget.12356 · DOI
  142. Baker, B.M., Nargund, A.M., Sun, T., and Haynes, C.M. (2012). Protective coupling of mitochondrial function and protein synthesis via the eIF2alpha kinase GCN-2. PLoS Genet., 8. · DOI
  143. Topf, 2018, Quantitative proteomics identifies redox switches for global translation modulation by mitochondrially produced reactive oxygen species, Nat. Commun., 9, 324, 10.1038/s41467-017-02694-8 · DOI

Metadata

Authors
Tatara, Y., Kasai, S., Kokubu, D., Tsujita, T., Mimura, J., & Itoh, K.
Affiliations
  • Hirosaki University (JP)
  • Saga University (JP)
Corresponding author
Itoh, Ken
Venue
International Journal of Molecular Sciences
Publisher
MDPI AG
Published
2024-03-05
Volume
25
Issue
5
Pages
2998
ISSN
1422-0067 (ISSN-L)
OpenAlex
W4392469865
Cited by
16
References
5
Citations by year
2026: 7 · 2025: 6 · 2024: 3
FWCI
0.65
Type
journal article
Language
en
Open access
Locations
  • International Journal of Molecular Sciences (publishedVersion, cc-by)
  • Preprints.org (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
  • JSPS KAKENHI (22H03515, 26111010)
  • Grant-in-Aid (22H03515, 26111010)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
Keywords
GCN1, GCN2, ribosome collisions, cell proliferation, apoptosis, immune response, energy homeostasis, proteostasis, aging, neurodegenerative diseases, stress response
MeSH terms
Amino Acids, Animals, Homeostasis, Humans, Peptide Elongation Factors, Saccharomyces cerevisiae, Trans-Activators, RNA-Binding Proteins, Protein Serine-Threonine Kinases, Saccharomyces cerevisiae Proteins, Mice

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review