Automatic Text Summarization of Biomedical Text Data: A Systematic Review
Open accessAbstract
In recent years, the evolution of technology has led to an increase in text data obtained from many sources. In the biomedical domain, text information has also evidenced this accelerated growth, and automatic text summarization systems play an essential role in optimizing physicians’ time resources and identifying relevant information. In this paper, we present a systematic review in recent research of text summarization for biomedical textual data, focusing mainly on the methods employed, type of input data text, areas of application, and evaluation metrics used to assess systems. The survey was limited to the period between 1st January 2014 and 15th March 2022. The data collected was obtained from WoS, IEEE, and ACM digital libraries, while the search strategies were developed with the help of experts in NLP techniques and previous systematic reviews. The four phases of a systematic review by PRISMA methodology were conducted, and five summarization factors were determined to assess the studies included: Input, Purpose, Output, Method, and Evaluation metric. Results showed that 3.5% of 801 studies met the inclusion criteria. Moreover, Single-document, Biomedical Literature, Generic, and Extractive summarization proved to be the most common approaches employed, while techniques based on Machine Learning were performed in 16 studies and Rouge (Recall-Oriented Understudy for Gisting Evaluation) was reported as the evaluation metric in 26 studies. This review found that in recent years, more transformer-based methodologies for summarization purposes have been implemented compared to a previous survey. Additionally, there are still some challenges in text summarization in different domains, especially in the biomedical field in terms of demand for further research.
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Most authors focused on summarization of radiology reports, i.e., on the creation of a shorter version that includes all important aspects at the same level of text complexity.
“So far, most authors focused on summarization of radiology reports, i.e., on the creation of a shorter version that includes all important aspects at the same level of text complexity [23–26].”
From ChatGPT makes medicine easy to swallow: an exploratory case study on simplified radiology reports (2023) · cites this paper as [26]
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Large Language Models for Explainable Medical Text Summarization: A Systematic Literature Review
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- Authors
- Chaves, A., Kesiku, C., & Garcia-Zapirain, B.
- Affiliations
- eVida Research Group, University of Deusto, Avda/Universidades 24, 48007 Bilbao, Spain
- Universidad de Deusto (ES)
- Venue
- Information
- Publisher
- MDPI AG
- Published
- 2022-08-19
- Volume
- 13
- Issue
- 8
- Pages
- 393
- ISSN
- 2078-2489 (ISSN-L)
- OpenAlex
- W4298339612
- Cited by
- 53
- References
- 70
- Citations by year
- 2026: 10 · 2025: 16 · 2024: 15 · 2023: 10 · 2022: 2
- FWCI
- 0.76
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Information (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Topics
- Physical Sciences › Computer Science › Artificial Intelligence › Advanced Text Analysis Techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biomedical Text Mining and Ontologies
- Physical Sciences › Computer Science › Artificial Intelligence › Topic Modeling
- Keywords
- text summarization, biomedical text, extractive summarization, abstractive summarization, single-document summarization, biomedical literature, transformer-based summarization, medical information retrieval
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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