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The First 50 Plant Genomes
Open accessAbstract
IFTY-FIVE plant genomes have been published to date representing 49 diferent species (Table 1 includes PubMed IDs for complete reference).What have we learned from the irst wave of plant genomes?It has been said that plant genome papers (and genome papers in general) are dry and lack "biology" and that the days of high impact plant genome papers are drawing to a close unless they explore signiicant biology.However, with each new genome, earlier observations are reined and plant genome papers continue to reveal novel aspects of genome biology.For example, the tomato and banana genome papers reined current thinking on the whole genome duplications (WGD) that shaped dicot and monocot genome evolution (D'Hont et al., 2012; Tomato Genome Consortium, 2012).hese observations were enabled not only by high quality genome assemblies but also by a greater number of genomes available for comparisons.In addition, the initial round of plant genomes enabled the irst generation of functional genomics that helped to deine the roles of hundreds of genes, provided unprecedented access to sequence-based markers for breeding, and provided glimpses into plant evolutionary history.More genomes, representing the diverse array of species in Viridiplantae are still required to gain a full understanding of plant genome structure, evolution, and complexity.
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Cites
An integrated encyclopedia of DNA elements in the human genome
The ENCODE Project Consortium (2012) · Nature · doi:10.1038/nature11247 · Cited by 18,072
A physical, genetic and functional sequence assembly of the barley genome
The International Barley Genome Sequencing Consortium (2012) · Nature · doi:10.1038/nature11543 · Cited by 1,456
Cited by
Status and prospects of genome‐wide association studies in plants
Tibbs Cortes, L., Zhang, Z., & Yu, J. (2021) · The Plant Genome · doi:10.1002/tpg2.20077 · Cited by 470
PLAZA 3.0: an access point for plant comparative genomics
Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inzé, D., Mueller-Roeber, B., & Vandepoele, K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku986 · Cited by 317
Introgression of Crop Alleles into Wild or Weedy Populations
Ellstrand, N. C., Meirmans, P., Rong, J., Bartsch, D., Ghosh, A., de Jong, T. J., Haccou, P., Lu, B.-R., Snow, A. A., Neal Stewart, C., et al. (2013) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-110512-135840 · Cited by 233
Mathematical models of plant metabolism
Shi, H., & Schwender, J. (2016) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2015.10.008 · Cited by 21
Expression‐based machine learning models for predicting plant tissue identity
Palande, S., Arsenault, J., Basurto‐Lozada, P., Bleich, A., Brown, B. N. I., Buysse, S. F., Connors, N. A., Das Adhikari, S., Dobson, K. C., Guerra‐Castillo, F. X., et al. (2025) · Applications in Plant Sciences · doi:10.1002/aps3.11621 · Cited by 7
Metadata
- Authors
- Michael, T. P., & Jackson, S.
- Venue
- The Plant Genome
- Publisher
- Wiley
- Published
- 2013-07
- Volume
- 6
- Issue
- 2
- ISSN
- 1940-3372 (ISSN-L)
- OpenAlex
- W2036551273
- Cited by
- 265
- References
- 2
- FWCI
- 44.51
- Type
- journal article
- Language
- en
- Open access
- gold
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