Systematic reappraisal of species in Phoma section Paraphoma , Pyrenochaeta and Pleurophoma
Open accessAbstract
Sequence data from the 18S nrDNA (SSU) and 28S nrDNA (LSU) regions of isolates of Phoma section Paraphoma were compared with those of representative isolates of the morphologically similar anamorph genera Pleurophoma and Pyrenochaeta and of the type species of Phoma sections Phoma, Pilosa and Plenodomus. Phoma section Paraphoma was found to be highly polyphyletic within the Pleosporales and only distantly related to Phoma section Phoma. The genus Paraphoma, which is based on Paraphoma radicina, is reintroduced in the Phaeosphaeriaceae with two additional taxa. The new genera Setophoma and Neosetophoma, type species Setophoma terrestris comb. nov. and Neosetophoma samarorum comb. nov., are introduced and represent species that are closely related to Paraphoma but differ based on morphological characters and molecular phylogeny. Phoma coonsii is transferred to genus Chaetosphaeronema that also belongs to the Phaeosphaeriaceae. Pyrenochaetopsis gen. nov. is introduced to accommodate the type species Pyrenochaetopsis leptospora comb. nov., as well as several other species formerly accommodated in Phoma and Pyrenochaeta. Pyrenochaetopsis is closely related to Pyrenochaeta and classified in the Cucurbitariaceae. Pleurophoma cava is transferred to genus Pyrenochaeta. The new genera elucidate the confusing taxonomy of species in genera Phoma, Pyrenochaeta and Pleurophoma and recognize monophyletic genera with distinct teleomorph affinities.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The text we found for this paper looks like another document, so the self-check wasn’t run.
Cites
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
White, T. J., Bruns, T., Lee, S., & Taylor, J. (1990) · PCR Protocols · doi:10.1016/b978-0-12-372180-8.50042-1 · Cited by 36,648 · see citing works
MRBAYES: Bayesian inference of phylogenetic trees.
Huelsenbeck, J. P., & Ronquist, F. (2001) · Bioinformatics · doi:10.1093/bioinformatics/17.8.754 · Cited by 21,937 · see citing works
Vilgalys, R. J., & Hester, M. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.8.4238-4246.1990 · Cited by 5,993 · see citing works
MRBAYES: Bayesian inference of phylogeny
Huelsenbeck, J. P., & Ronquist, F. (2001) · Bioinformatics · Cited by 4,892 · see citing works
Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences
Rehner, S. A., & Samuels, G. J. (1994) · Mycological Research · doi:10.1016/s0953-7562(09)80409-7 · Cited by 1,139 · see citing works
The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata.
Sutton, B. C. (1980) · Commonwealth Mycological Institute eBooks · Cited by 1,080 · see citing works
The Bitunicate Ascomycetes and Their Anamorphs
Sivanesan, A. (1984) · Medical Entomology and Zoology · Cited by 386 · see citing works
Phoma identification manual. Differentiation of specific and infra-specific taxa in culture
Boerema, G. H., de Gruyter, J., Noordeloos, M. E., & Hamers, M. E. C. (2004) · CABI Publishing eBooks · doi:10.1079/9780851997438.0000 · Cited by 384 · see citing works
Multiple Didymella teleomorphs are linked to the Phoma clematidina morphotype
Woudenberg, J. H. C., Aveskamp, M. M., de Gruyter, J., Spiers, A. G., & Crous, P. W. (2009) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158509x427808 · Cited by 324 · see citing works
de Gruyter, J., Aveskamp, M. M., Woudenberg, J. H. C., Verkley, G. J. M., Groenewald, J. Z., & Crous, P. W. (2009) · Mycological Research · doi:10.1016/j.mycres.2009.01.002 · Cited by 285 · see citing works
DNA phylogeny reveals polyphyly ofPhomasectionPeyronellaeaand multiple taxonomic novelties
Aveskamp, M. M., Verkley, G. J. M., de Gruyter, J., Murace, M. A., Perelló, A., Woudenberg, J. H. C., Groenewald, J. Z., & Crous, P. W. (2009) · Mycologia · doi:10.3852/08-199 · Cited by 236 · see citing works
Aveskamp, M. M., de Gruyter, J., & Crous, P. W. (2008) · Socio-Environmental Systems Modeling · Cited by 190 · see citing works
Berbee, M. L. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025607 · Cited by 151 · see citing works
Fungal Biodiversity (CBS Laboratory Manual Series)
Crous, P. W., Verkley, G. J. M., Groenewald, J. Z., & Samson, R. (2010) · Data Archiving and Networked Services (DANS) · Cited by 144 · see citing works
Species concepts in some larger genera of the Coelomycetes.
van der Aa, H. A., Noordeloos, M. E., & de Gruyter, J. (1990) · Studies in Mycology · Cited by 99 · see citing works
A revision of the species described in Phyllosticta
van der Aa, H. A., Vanev, S. G., Aptroot, A., Summerbell, R. C., & Verkley, G. J. M. (2002) · Centraalbureau voor Schimmelcultures eBooks · Cited by 91 · see citing works
Molecular Phylogeny of Leptosphaeria and Phaeosphaeria
Câmara, M. P. S., Palm, M. E., van Berkum, P., & O’Neill, N. R. (2002) · Mycologia · doi:10.1080/15572536.2003.11833191 · Cited by 78 · see citing works
Silva-Hanlin, D. M. W., & Hanlin, R. T. (1999) · Mycological Research · doi:10.1017/s0953756298006972 · Cited by 65 · see citing works
Key to nine ubiquitous soil-borne Phoma-like fungi
Dorenbosch, M. M. J. (1970) · Data Archiving and Networked Services (DANS) · Cited by 62 · see citing works
Ueber Phaeosphaeria Miyake und andere bitunicate Ascomyceten mit mehrfach querseptierten Ascosporen
Leuchtmann, A. (1984) · ETH Zürich Research Collection · doi:10.3929/ethz-a-000320965 · Cited by 60 · see citing works
Neophaeosphaeria and Phaeosphaeriopsis segregates of Paraphaeosphaeria
Câmara, M. P. S., Ramaley, A. W., Castlebury, L. A., & Palm, M. E. (2003) · Mycological Research · doi:10.1017/s0953756203007731 · Cited by 50 · see citing works
Contributions towards a monograph of Phoma (Coelomycetes) — II. Section Peyronellaea
Boerema, G. H. (1993) · The Digital Academic Repository of Naturalis Biodiversity Center (Naturalis Biodiversity Center) · Cited by 47 · see citing works
Etiology of the pink-root disease of Onions.
Hassen, H. N. (1929) · Phytopathology · Cited by 36 · see citing works
Bambusicolous fungi in Japan (7): a new coelomycetous genus, Versicolorisporium
Hatakeyama, S., Tanaka, K., & Harada, Y. (2008) · Mycoscience · doi:10.1007/s10267-008-0409-5 · Cited by 35 · see citing works
Pyrenochaeta unguis-hominis sp.nov. on human toe-nails
Punithalingam, E., & English, M. P. (1975) · Transactions of the British Mycological Society · doi:10.1016/s0007-1536(75)80163-x · Cited by 26 · see citing works
Boerema, G. H., Loerakker, W. M., & Hamers, M. E. C. (1996) · The Digital Academic Repository of Naturalis Biodiversity Center (Naturalis Biodiversity Center) · Cited by 26 · see citing works
de Gruyter, J., & Boerema, G. H. (2002) · Data Archiving and Networked Services (DANS) · Cited by 20 · see citing works
Die Gattung Pyrenochaeta De Notaris
Schneider, R. (1979) · OpenAgrar · doi:10.5073/20210624-112458 · Cited by 18 · see citing works
Rossman, A. Y., Farr, D. F., Castlebury, L. A., Shoemaker, R. A., & Mengistu, A. (2002) · Canadian Journal of Botany · doi:10.1139/b02-111 · Cited by 17 · see citing works
Pyrenochaeta dolichi: an example of a confusing species
Grondona, I., Monte, E., Garcia-Acha, I., & Sutton, B. C. (1997) · Mycological Research · doi:10.1017/s0953756297004206 · Cited by 16 · see citing works
Borelli, D. (1959) · Dermatología Venezolana · Cited by 12 · see citing works
Freyer, K., & van der Aa, H. A. (1975) · European Journal of Forest Pathology · doi:10.1111/j.1439-0329.1975.tb00463.x · Cited by 11 · see citing works
Phoma septicidalis . [Descriptions of Fungi and Bacteria].
UK, C. I., & Kinsey, G. C. (2002) · Descriptions of Fungi and Bacteria · doi:10.1079/dfb/20056401508 · Cited by 1 · see citing works
Flagged first, then by citations
1 of the 34 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Ariyawansa, H. A., Hyde, K. D., Jayasiri, S. C., Buyck, B., Chethana, K. W. T., Dai, D. Q., Dai, Y. C., Daranagama, D. A., Jayawardena, R. S., Lücking, R., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-015-0346-5 · Cited by 751 · see citing works
Hyde, K. D., Jones, E. B. G., Liu, J., Ariyawansa, H. A., Boehm, E. W. A., Boonmee, S., Braun, U., Chomnunti, P., Crous, P. W., Dai, D.-Q., et al. (2013) · Fungal Diversity · doi:10.1007/s13225-013-0263-4 · Cited by 730 · see citing works
Aveskamp, M. M., de Gruyter, J., Woudenberg, J. H. C., Verkley, G. J. M., & Crous, P. W. (2010) · Studies in Mycology · doi:10.3114/sim.2010.65.01 · Cited by 578 · see citing works
Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa
Hyde, K. D., Hongsanan, S., Jeewon, R., Bhat, D. J., McKenzie, E. H. C., Jones, E. B. G., Phookamsak, R., Ariyawansa, H. A., Boonmee, S., Zhao, Q., et al. (2016) · Fungal Diversity · doi:10.1007/s13225-016-0373-x · Cited by 530 · see citing works
Fungal diversity notes 1–110: taxonomic and phylogenetic contributions to fungal species
Liu, J., Hyde, K. D., Jones, E. B. G., Ariyawansa, H. A., Bhat, D. J., Boonmee, S., Maharachchikumbura, S. S. N., McKenzie, E. H. C., Phookamsak, R., Phukhamsakda, C., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-015-0324-y · Cited by 473 · see citing works
Fungal Planet description sheets: 214–280
Crous, P. W., Shivas, R. G., Quaedvlieg, W., van der Bank, M., Zhang, Y., Summerell, B. A., Guarro, J., Wingfield, M. J., Wood, A. R., Alfenas, A. C., et al. (2014) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158514x682395 · Cited by 413 · see citing works
One stop shop: backbones trees for important phytopathogenic genera: I (2014)
Hyde, K. D., Nilsson, R. H., Alias, S. A., Ariyawansa, H. A., Blair, J. E., Cai, L., de Cock, A. W. A. M., Dissanayake, A. J., Glockling, S. L., Goonasekara, I. D., et al. (2014) · Fungal Diversity · doi:10.1007/s13225-014-0298-1 · Cited by 379 · see citing works
Chen, Q., Jiang, J., Zhang, G. Z., Cai, L., & Crous, P. W. (2015) · Studies in Mycology · doi:10.1016/j.simyco.2015.10.003 · Cited by 380 · see citing works
Zhang, Y., Crous, P. W., Schoch, C. L., & Hyde, K. D. (2011) · Fungal Diversity · doi:10.1007/s13225-011-0117-x · Cited by 377 · see citing works
Redisposition of phoma-like anamorphs in Pleosporales
de Gruyter, J., Woudenberg, J. H. C., Aveskamp, M. M., Verkley, G. J. M., Groenewald, J. Z., & Crous, P. W. (2013) · Studies in Mycology · doi:10.3114/sim0004 · Cited by 357 · see citing works
Quaedvlieg, W., Verkley, G. J. M., Shin, H.-D., Barreto, R. W., Alfenas, A. C., Swart, W. J., Groenewald, J. Z., & Crous, P. W. (2013) · Studies in Mycology · doi:10.3114/sim0017 · Cited by 334 · see citing works
Wijayawardene, N. N., Hyde, K. D., Rajeshkumar, K. C., Hawksworth, D. L., Hugo Madrid, L., Kirk, P. M., Braun, U., Singh, R. V., Crous, P. W., Kukwa, M., et al. (2017) · Fungal Diversity · doi:10.1007/s13225-017-0386-0 · Cited by 335 · see citing works
Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa
Tibpromma, S., Hyde, K. D., Jeewon, R., Maharachchikumbura, S. S. N., Liu, J., Bhat, D. J., Jones, E. B. G., McKenzie, E. H. C., Camporesi, E., Bulgakov, T. S., et al. (2017) · Fungal Diversity · doi:10.1007/s13225-017-0378-0 · Cited by 324 · see citing works
Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species
Hyde, K. D., Norphanphoun, C., Abreu, V. P., Bazzicalupo, A., Thilini Chethana, K. W., Clericuzio, M., Dayarathne, M. C., Dissanayake, A. J., Ekanayaka, A. H., He, M.-Q., et al. (2017) · Fungal Diversity · doi:10.1007/s13225-017-0391-3 · Cited by 307 · see citing works
Hyde, K. D., Dong, Y., Phookamsak, R., Jeewon, R., Bhat, D. J., Jones, E. B. G., Liu, N.-G., Abeywickrama, P. D., Mapook, A., Wei, D.-P., et al. (2020) · Fungal Diversity · doi:10.1007/s13225-020-00439-5 · Cited by 293 · see citing works
Hyde, K. D., Tennakoon, D. S., Jeewon, R., Bhat, D. J., Maharachchikumbura, S. S. N., Rossi, W., Leonardi, M., Lee, H. B., Mun, H. Y., Houbraken, J. A. M. P., et al. (2019) · Fungal Diversity · doi:10.1007/s13225-019-00429-2 · Cited by 289 · see citing works
Wanasinghe, D. N., Phukhamsakda, C., Hyde, K. D., Jeewon, R., Lee, H. B., Jones, E. B. G., Tibpromma, S., Tennakoon, D. S., Dissanayake, A. J., Jayasiri, S. C., et al. (2018) · Fungal Diversity · doi:10.1007/s13225-018-0395-7 · Cited by 271 · see citing works
Fungal Planet description sheets: 400–468
Crous, P. W., Wingfield, M. J., Richardson, D. M., Leroux, J. J., Strasberg, D., Edwards, J., Roets, F., Hubka, V., Taylor, P. W. J., Heykoop, M., et al. (2016) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158516x692185 · Cited by 267 · see citing works
Wijayawardene, N. N., Crous, P. W., Kirk, P. M., Hawksworth, D. L., Boonmee, S., Braun, U., Dai, D.-Q., D’souza, M. J., Diederich, P., Dissanayake, A. J., et al. (2014) · Fungal Diversity · doi:10.1007/s13225-014-0309-2 · Cited by 267 · see citing works
Fungal Planet description sheets: 320–370
Crous, P. W., Wingfield, M. J., Guarro, J., Hernández‐Restrepo, M., Sutton, D. A., Acharya, K., Barber, P. A., Boekhout, T., Dimitrov, R., Dueñas, M., et al. (2015) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158515x688433 · Cited by 257 · see citing works
Diederich, P., Lawrey, J. D., & Ertz, D. (2018) · The Bryologist · doi:10.1639/0007-2745-121.3.340 · Cited by 240 · see citing works
Fungal Planet description sheets: 558–624
Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G. E. S. J., Barber, P. A., Alvarado, P., Barnes, C. W., Buchanan, P., Heykoop, M., Moreno, G. H., et al. (2017) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158517x698941 · Cited by 204 · see citing works
Taxonomy and phylogeny of dematiaceous coelomycetes
Wijayawardene, N. N., Hyde, K. D., Wanasinghe, D. N., Papizadeh, M., Goonasekara, I. D., Camporesi, E., Bhat, D. J., McKenzie, E. H. C., Phillips, A. J. L., Diederich, P., et al. (2016) · Fungal Diversity · doi:10.1007/s13225-016-0360-2 · Cited by 196 · see citing works
Fungal Planet description sheets: 281–319
Crous, P. W., Wingfield, M. J., Schumacher, R. K., Summerell, B. A., Giraldo, A., Gené, J., Guarro, J., Wanasinghe, D. N., Hyde, K. D., Camporesi, E., et al. (2014) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158514x685680 · Cited by 192 · see citing works
Genera of phytopathogenic fungi: GOPHY 3
Marín-Felix, Y., Hernández‐Restrepo, M., Iturrieta‐González, I., García, D., Gené, J., Groenewald, J. Z., Cai, L., Chen, Q., Quaedvlieg, W., Schumacher, R. K., et al. (2019) · Studies in Mycology · doi:10.1016/j.simyco.2019.05.001 · Cited by 192 · see citing works
Fungal Planet description sheets: 371–399
Crous, P. W., Wingfield, M. J., Roux, J. J. L., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G. H., Sharma, R. K., et al. (2015) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158515x690269 · Cited by 191 · see citing works
Crous, P. W., Schumacher, R. K., Akulov, A., Thangavel, R., Hernández‐Restrepo, M., Carnegie, A. J., Cheewangkoon, R., Wingfield, M. J., Summerell, B. A., Quaedvlieg, W., et al. (2019) · Fungal Systematics and Evolution · doi:10.3114/fuse.2019.03.06 · Cited by 188 · see citing works
Coelomycetous Dothideomycetes with emphasis on the families Cucurbitariaceae and Didymellaceae
Valenzuela-López, N., Cano, J., Guarro, J., Sutton, D. A., Wiederhold, N. P., Crous, P. W., & Stchigel, A. M. (2017) · Studies in Mycology · doi:10.1016/j.simyco.2017.11.003 · Cited by 184 · see citing works
Phookamsak, R., Liu, J., McKenzie, E. H. C., Manamgoda, D. S., Ariyawansa, H. A., Thambugala, K. M., Dai, D.-Q., Camporesi, E., Chukeatirote, E., Wijayawardene, N. N., et al. (2014) · Fungal Diversity · doi:10.1007/s13225-014-0308-3 · Cited by 182 · see citing works
Mapook, A., Hyde, K. D., McKenzie, E. H. C., Jones, E. B. G., Bhat, D. J., Jeewon, R., Stadler, M., Samarakoon, M. C., Malaithong, M., Tanunchai, B., et al. (2020) · Fungal Diversity · doi:10.1007/s13225-020-00444-8 · Cited by 173 · see citing works
Hou, L., Groenewald, J. Z., Pfenning, L. H., Yarden, O., Crous, P. W., & Cai, L. (2020) · Studies in Mycology · doi:10.1016/j.simyco.2020.05.001 · Cited by 165 · see citing works
Genera of phytopathogenic fungi: GOPHY 2
Marín-Felix, Y., Hernández‐Restrepo, M., Wingfield, M. J., Akulov, A., Carnegie, A. J., Cheewangkoon, R., Gramaje, D., Groenewald, J. Z., Guarnaccia, V., Halleen, F., et al. (2018) · Studies in Mycology · doi:10.1016/j.simyco.2018.04.002 · Cited by 157 · see citing works
Fungal Planet description sheets: 1182–1283
Crous, P. W., Cowan, D. A., Maggs‐Kölling, G., Yılmaz, N., Thangavel, R., Wingfield, M. J., Noordeloos, M. E., Dima, B., Brandrud, T. E., Jansen, G. M., et al. (2021) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/persoonia.2021.46.11 · Cited by 146 · see citing works
Novel genera and species of coniothyrium-like fungi in Montagnulaceae ( Ascomycota )
Verkley, G. J. M., Dukik, K., Renfurm, R., Göker, M., & Stielow, J. B. (2014) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158514x679191 · Cited by 143 · see citing works
Fungal pathogens of Proteaceae
Crous, P. W., Summerell, B. A., Swart, L., Denman, S., Taylor, J. E., Bezuidenhout, C. M., Palm, M. E., Marincowitz, S., & Groenewald, J. Z. (2011) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158511x606239 · Cited by 143 · see citing works
A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales)
Wikee, S., Lombard, L., Nakashima, C., Motohashi, K., Chukeatirote, E., Cheewangkoon, R., McKenzie, E. H. C., Hyde, K. D., & Crous, P. W. (2013) · Studies in Mycology · doi:10.3114/sim0019 · Cited by 142 · see citing works
Revision of agents of black-grain eumycetoma in the order Pleosporales
Ahmed, S. A., van de Sande, W. W. J., Stevens, D. A., Fahal, A. H., van Diepeningen, A. D., Menken, S. B. J., & de Hoog, S. (2014) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158514x684744 · Cited by 134 · see citing works
Genera of phytopathogenic fungi: GOPHY 4
Chen, Q., Bakhshi, M., Balcì, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X., Gramaje, D., Halleen, F., Jung, M. H., et al. (2022) · Studies in Mycology · doi:10.3114/sim.2022.101.06 · Cited by 130 · see citing works
Taxonomy and phylogeny of hyaline-spored coelomycetes
Li, W., McKenzie, E. H. C., Liu, J., Bhat, D. J., Dai, D.-Q., Camporesi, E., Tian, Q., Maharachchikumbura, S. S. N., Luo, Z.-L., Shang, Q.-J., et al. (2020) · Fungal Diversity · doi:10.1007/s13225-020-00440-y · Cited by 123 · see citing works
Phyllosticta—an overview of current status of species recognition
Wikee, S., Udayanga, D., Crous, P. W., Chukeatirote, E., McKenzie, E. H. C., Bahkali, A. H., Dai, D.-Q., & Hyde, K. D. (2011) · Fungal Diversity · doi:10.1007/s13225-011-0146-5 · Cited by 113 · see citing works
Fungal Planet description sheets: 92–106
Crous, P. W., Summerell, B. A., Shivas, R. G., Romberg, M. K., Мельник, В. А., Verkley, G. J. M., & Groenewald, J. Z. (2011) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/003158511x617561 · Cited by 107 · see citing works
Liu, J., Phookamsak, R., Dai, D.-Q., Tanaka, K., Jones, E. B. G., Xu, J., Chukeatirote, E., & Hyde, K. D. (2014) · Phytotaxa · doi:10.11646/phytotaxa.181.1.1 · Cited by 97 · see citing works
Mycoparasitic species of Sphaerellopsis, and allied lichenicolous and other genera
Trakunyingcharoen, T., Lombard, L., Groenewald, J. Z., Cheewangkoon, R., To-anun, C., Alfenas, A. C., & Crous, P. W. (2014) · IMA Fungus · doi:10.5598/imafungus.2014.05.02.05 · Cited by 96 · see citing works
Crous, P. W., Hernández‐Restrepo, M., Schumacher, R. K., Cowan, D. A., Maggs‐Kölling, G., Marais, E., Wingfield, M. J., Yılmaz, N., Adan, O. C. G., Akulov, A., et al. (2021) · Fungal Systematics and Evolution · doi:10.3114/fuse.2021.07.13 · Cited by 96 · see citing works
Phoma diseases: Epidemiology and control
Deb, D., Khan, A., & Dey, N. (2020) · Plant Pathology · doi:10.1111/ppa.13221 · Cited by 94 · see citing works
Resistance to Dutch Elm Disease Reduces Presence of Xylem Endophytic Fungi in Elms (Ulmus spp.)
Martín, J. A. M., Witzell, J., Blumenstein, K., Rozpędowska, E., Helander, M. L., Sieber, T. N., & Gil, L. (2013) · PLoS ONE · doi:10.1371/journal.pone.0056987 · Cited by 84 · see citing works
Determinants of root‐associated fungal communities within A steraceae in a semi‐arid grassland
Wehner, J., Powell, J. R., Muller, L. A. H., Caruso, T., Veresoglou, S. D., Hempel, S., & Rillig, M. C. (2013) · Journal of Ecology · doi:10.1111/1365-2745.12197 · Cited by 82 · see citing works
Biosynthetically Distinct Cytotoxic Polyketides from Setophoma terrestris
El‐Elimat, T., Figueroa, M., Raja, H. A., Graf, T. N., Swanson, S. M., Falkinham, J. O., Wani, M. C., Pearce, C. J., & Oberlies, N. H. (2014) · European Journal of Organic Chemistry · doi:10.1002/ejoc.201402984 · Cited by 74 · see citing works
Drouin, P., Tremblay, J., & Chaucheyras-Durand, F. (2019) · Microorganisms · doi:10.3390/microorganisms7120595 · Cited by 71 · see citing works
Whole genome sequencing and phylogenomic analysis show support for the splitting of genus Pythium
Nguyen, H. D. T., Dodge, A. E., Dadej, K., Rintoul, T. L., Ponomareva, E., Martin, F. N., de Cock, A. W. A. M., Lévesque, C. A., Redhead, S. A., & Spies, C. F. J. (2022) · Mycologia · doi:10.1080/00275514.2022.2045116 · Cited by 72 · see citing works
Qin, Y., Pan, X., Kubicek, C., Druzhinina, I. S., Chenthamara, K., Labbé, J., & Yuan, Z. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00158 · Cited by 70 · see citing works
Yew, S. M., Chan, C. L., Lee, K. W., Na, S. L., Tan, R., Hoh, C.-C., Yee, W.-Y., Ngeow, Y. F., & Ng, K. P. (2014) · PLoS ONE · doi:10.1371/journal.pone.0104352 · Cited by 67 · see citing works
Revision and phylogeny of Leptosphaeriaceae
Ariyawansa, H. A., Phukhamsakda, C., Thambugala, K. M., Bulgakov, T. S., Wanasinghe, D. N., Perera, R. H., Mapook, A., Camporesi, E., Kang, J.-C., Jones, E. B. G., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-015-0349-2 · Cited by 66 · see citing works
A polyphasic approach to characterise two novel species of Phoma (Didymellaceae) from China
Chen, Q., Zhang, K., Zhang, G., & Cai, L. (2015) · Phytotaxa · doi:10.11646/phytotaxa.197.4.4 · Cited by 64 · see citing works
Phylogenetic revision of Camarosporium ( Pleosporineae , Dothideomycetes ) and allied genera
Wanasinghe, D. N., Hyde, K. D., Jeewon, R., Crous, P. W., Wijayawardene, N. N., Jones, E. B. G., Bhat, D. J., Phillips, A. J. L., Groenewald, J. Z., Dayarathne, M. C., et al. (2017) · Studies in Mycology · doi:10.1016/j.simyco.2017.08.001 · Cited by 64 · see citing works
Lawrey, J. D., Diederich, P., Nelsen, M. P., Freebury, C. E., den Broeck, D. V., Sikaroodi, M., & Ertz, D. (2012) · Fungal Diversity · doi:10.1007/s13225-012-0166-9 · Cited by 61 · see citing works
Kowalski, T., Kraj, W., & Bednarz, B. (2016) · European Journal of Forest Research · doi:10.1007/s10342-016-0955-x · Cited by 60 · see citing works
A preliminary account of the Cucurbitariaceae
Jaklitsch, W. M., Checa, J., Blanco, M. N., Olariaga, I., Tello, S., & Voglmayr, H. (2017) · Studies in Mycology · doi:10.1016/j.simyco.2017.11.002 · Cited by 59 · see citing works
Pino‐Bodas, R., Zhurbenko, M. P., & Stenroos, S. (2017) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/persoonia.2017.39.05 · Cited by 58 · see citing works
What are the 100 most cited fungal genera?
Bhunjun, C. S., Chen, Y. J., Phukhamsakda, C., Boekhout, T., Groenewald, J. Z., McKenzi, E. H. C., Francisco, E. C., Frisvad, J. C., Groenewald, M., Hurdeal, V. G., et al. (2024) · Studies in Mycology · doi:10.3114/sim.2024.108.01 · Cited by 57 · see citing works
Stagonosporopsis spp. associated with ray blight disease of Asteraceae
Vaghefi, N., Pethybridge, S. J., Ford, R., Nicolas, M. E., Crous, P. W., & Taylor, P. W. J. (2012) · Australasian Plant Pathology · doi:10.1007/s13313-012-0161-3 · Cited by 56 · see citing works
Sea foam as a source of fungal inoculum for the isolation of biologically active natural products
Overy, D. P., Berrué, F., Correa, H., Hanif, N., Hay, K., Lanteigne, M., Mquilian, K., Duffy, S., Boland, P. G., Ramesh, J., et al. (2014) · Mycology: An International Journal on Fungal Biology · doi:10.1080/21501203.2014.931893 · Cited by 52 · see citing works
Phookamsak, R., Wanasinghe, D. N., Hongsanan, S., Phukhamsakda, C., Huang, J., Tennakoon, D. S., Norphanphoun, C., Camporesi, E., Bulgakov, T. S., Promputtha, I., et al. (2017) · Fungal Diversity · doi:10.1007/s13225-017-0393-1 · Cited by 52 · see citing works
Abbas, A., Mubeen, M., Sohail, M. A., Solanki, M. K., Hussain, B., Nosheen, S., Kashyap, B. K., Zhou, L., & Fang, X. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.961794 · Cited by 53 · see citing works
Fungi of quarantine concern for China I: Dothideomycetes
Zhao, P., Crous, P. W., Hou, L., Duan, W., Cai, L., Ma, Z., & Liu, F. (2021) · Persoonia - Molecular Phylogeny and Evolution of Fungi · doi:10.3767/persoonia.2021.47.02 · Cited by 49 · see citing works
Shim, S. H., Baltrušaitis, J., Gloer, J. B., & Wicklow, D. T. (2011) · Journal of Natural Products · doi:10.1021/np100791b · Cited by 47 · see citing works
Gnavi, G., Ercole, E., Panno, L., Vizzini, A., & Varese, G. C. (2014) · SpringerPlus · doi:10.1186/2193-1801-3-508 · Cited by 46 · see citing works
New asexual morph taxa in Phaeosphaeriaceae
Li, W. J. (2015) · Mycosphere · doi:10.5943/mycosphere/6/6/5 · Cited by 46 · see citing works
Yang, E.-F., Tibpromma, S., Karunarathna, S. C., Phookamsak, R., Xu, J., Zhao, Z., Karunanayake, C., & Promputtha, I. (2022) · Journal of Fungi · doi:10.3390/jof8020152 · Cited by 44 · see citing works
Micro-fungi in southern China and northern Thailand: emphasis on medicinal plants
Sun, Y.-R., Hyde, K. D., Liu, N.-G., Jayawardena, R. S., Wijayawardene, N. N., Ma, J., Zhang, Q., Al-Otibi, F. O., & Wang, Y. (2025) · Fungal Diversity · doi:10.1007/s13225-024-00549-4 · Cited by 42 · see citing works
El‐Elimat, T., Raja, H. A., Figueroa, M., Falkinham, J. O., & Oberlies, N. H. (2014) · Phytochemistry · doi:10.1016/j.phytochem.2014.04.006 · Cited by 42 · see citing works
Wanasinghe, D. N., Mortimer, P. E., & Xu, J. (2021) · Journal of Fungi · doi:10.3390/jof7030180 · Cited by 42 · see citing works
Giraldo, A., Crous, P. W., Schumacher, R. K., Cheewangkoon, R., Ghobad‐Nejhad, M., & Langer, E. J. (2017) · Mycological Progress · doi:10.1007/s11557-017-1270-8 · Cited by 41 · see citing works
Paraphoma root rot of alfalfa ( Medicago sativa ) in Inner Mongolia, China
Shi, C., Liang, Q. W., Nzabanita, C., & Li, Y. Z. (2019) · Plant Pathology · doi:10.1111/ppa.13131 · Cited by 41 · see citing works
Fan, B., Dewapriya, P., Li, F., Blümel, M., & Taşdemir, D. (2020) · Marine Drugs · doi:10.3390/md18010047 · Cited by 41 · see citing works
Wijayawardene, N. N., Hyde, K. D., Bhat, D. J., Camporesi, E., Schumacher, R. K., Chethana, K. W. T., Wikee, S., Bahkali, A. H., & Wang, Y. (2014) · Cryptogamie Mycologie · doi:10.7872/crym.v35.iss2.2014.177 · Cited by 40 · see citing works
Ahmed, S. A., Hofmüller, W., Seibold, M., de Hoog, S., Harak, H., Tammer, I., van Diepeningen, A. D., & Behrens‐Baumann, W. (2016) · Mycoses · doi:10.1111/myc.12588 · Cited by 39 · see citing works
Indicator Species Analysis: A Useful Tool for Plant Disease Studies
Severns, P. M., & Sykes, E. M. (2020) · Phytopathology · doi:10.1094/phyto-12-19-0462-le · Cited by 39 · see citing works
Drivers of total and pathogenic soil-borne fungal communities in grassland plant species
Francioli, D., van Ruijven, J., Bakker, L. M., & Mommer, L. (2020) · Fungal ecology · doi:10.1016/j.funeco.2020.100987 · Cited by 39 · see citing works
Rai, M., Tiwari, V., Irinyi, L., & Kövics, G. J. (2013) · Indian Journal of Microbiology · doi:10.1007/s12088-013-0442-8 · Cited by 38 · see citing works
De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici
Aragona, M., Minio, A., Ferrarini, A., Valente, M. T., Bagnaresi, P., Orrù, L., Tononi, P., Zamperin, G., Infantino, A., Valè, G., et al. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-313 · Cited by 37 · see citing works
Diversity of mycelial fungi in natural and human-affected Antarctic soils
Kochkina, G. A., Ivanushkina, N. E., Lupachev, A. V., Starodumova, I. P., Vasilenko, O. V., & Ozerskaya, S. M. (2018) · Polar Biology · doi:10.1007/s00300-018-2398-y · Cited by 36 · see citing works
Day, N. J., Dunfield, K. E., & Antunes, P. M. (2015) · Biological Invasions · doi:10.1007/s10530-015-1004-2 · Cited by 36 · see citing works
Yang, C., Xu, X., Wanasinghe, D. N., Jeewon, R., Phookamsak, R., Liu, Y., Liu, L., & Hyde, K. D. (2019) · MycoKeys · doi:10.3897/mycokeys.46.32458 · Cited by 34 · see citing works
Pyrenochaeta romeroi: a causative agent of phaeohyphomycotic cyst
Khan, Z., Ahmad, S., Kapila, K., Ramaswamy, N. V., Alath, P., Joseph, L., & Chandy, R. G. (2011) · Journal of Medical Microbiology · doi:10.1099/jmm.0.029520-0 · Cited by 32 · see citing works
Marine-derived Phoma—the gold mine of bioactive compounds
Rai, M., Gade, A., Zimowska, B., Ingle, A. P., & Ingle, P. U. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-9329-2 · Cited by 31 · see citing works
Mycobiota Associated with the Vascular Wilt of Poplar
Kwaśna, H., Szewczyk, W., Baranowska, M., Gallas, E., Wiśniewska, M., & Behnke‐Borowczyk, J. (2021) · Plants · doi:10.3390/plants10050892 · Cited by 30 · see citing works
Assay of pyrogenic contamination in pharmaceuticals by cytokine release from monocytes.
Poole, S., Thorpe, R., Meager, A., & Gearing, A. J. H. (1988) · PubMed · Cited by 30 · see citing works
Phookamsak, R., Jiang, H.-B., Suwannarach, N., Lumyong, S., Xu, J., Xu, S., Liao, C.-F., & Chomnunti, P. (2022) · Journal of Fungi · doi:10.3390/jof8060630 · Cited by 29 · see citing works
Woudenberg, J. H. C., de Gruyter, J., Crous, P. W., & Zwiers, L. H. (2011) · Molecular Plant Pathology · doi:10.1111/j.1364-3703.2011.00751.x · Cited by 29 · see citing works
Wanasinghe, D. N. (2017) · Mycosphere · doi:10.5943/mycosphere/8/4/2 · Cited by 29 · see citing works
Current insights into palm fungi with emphasis on taxonomy and phylogeny
Zhang, S., Hyde, K. D., Jones, E. B. G., Yu, X.-D., Cheewangkoon, R., & Liu, J. (2024) · Fungal Diversity · doi:10.1007/s13225-024-00536-9 · Cited by 28 · see citing works
Tennakoon, D. S., Thambugala, K. M., Wanasinghe, D. N., Gentekaki, E., Promputtha, I., Kuo, C.-H., & Hyde, K. D. (2020) · MycoKeys · doi:10.3897/mycokeys.70.53674 · Cited by 28 · see citing works
Setophoma spp. on Camellia sinensis
Liu, F., Wang, J., Li, H., Wang, W., & Cai, L. (2019) · Fungal Systematics and Evolution · doi:10.3114/fuse.2019.04.05 · Cited by 27 · see citing works
Camarosporium sensu stricto in Pleosporinae, Pleosporales with two new species
Wijayawardene, N. N., Bhat, D. J., Hyde, K. D., Camporesi, E., Chethana, K. W. T., Tangthirasunun, N., & Wang, Y. (2014) · Phytotaxa · doi:10.11646/phytotaxa.183.1.2 · Cited by 26 · see citing works
Moslemi, A., Ades, P. K., Crous, P. W., Groom, T., Scott, J. B., Nicolas, M. E., & Taylor, P. W. J. (2017) · Plant Pathology · doi:10.1111/ppa.12719 · Cited by 26 · see citing works
Singh, S. B., Ondeyka, J. G., Harris, G. H., Herath, K. B., Zink, D. L., Vicente, F., Bills, G. F., Collado, J., Platas, G., del Val, A. G., et al. (2012) · Journal of Natural Products · doi:10.1021/np300704s · Cited by 26 · see citing works
Pink root rot of squash caused by Setophoma terrestris in Japan
Ikeda, K., Kuwabara, K., Urushibara, T., Soyai, P., Miki, S., & Shibata, S. (2012) · Journal of General Plant Pathology · doi:10.1007/s10327-012-0398-2 · Cited by 26 · see citing works
Fungal diversity in oil palm leaves showing symptoms of Fatal Yellowing disease
Costa, O. Y. A., Tupinambá, D. D., Bergmann, J. C., Barreto, C. C., & Quirino, B. F. (2018) · PLoS ONE · doi:10.1371/journal.pone.0191884 · Cited by 26 · see citing works
Fan, B., Dewapriya, P., Li, F., Grauso, L., Blümel, M., Mangoni, A., & Taşdemir, D. (2020) · Marine Drugs · doi:10.3390/md18060281 · Cited by 26 · see citing works
- Authors
- de Gruyter, J., Woudenberg, J. H. C., Aveskamp, M. M., Verkley, G. J. M., Groenewald, J. Z., & Crous, P. W.
- Affiliations
- Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, the Netherlands
- Westerdijk Fungal Biodiversity Institute (NL)
- Venue
- Mycologia
- Publisher
- Informa UK Limited
- Published
- 2010-09
- Volume
- 102
- Issue
- 5
- Pages
- 1066-1081
- ISSN
- 0027-5514 (ISSN-L)
- 1557-2536
- OpenAlex
- W2111689001
- Cited by
- 237
- References
- 34
- Citations by year
- 2026: 8 · 2025: 21 · 2024: 14 · 2023: 8 · 2022: 22 · 2021: 17 · 2020: 19 · 2019: 14 · 2018: 11 · 2017: 22 · 2016: 12 · 2015: 17 · 2014: 21 · 2013: 12 · 2012: 8
- FWCI
- 4.19
- Type
- journal article
- Language
- en
- Open access
- green
- research.wur.nl
- Locations
- Mycologia (publishedVersion)
- PubMed (publishedVersion)
- KNAW research portal (Royal Academy of Art and Sciences (KNAW)) (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Socio-Environmental Systems Modeling (submittedVersion)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Plant Pathogens and Fungal Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Yeasts and Rust Fungi Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Diversity and Evolution
- Keywords
- Phaeosphaeriaceae, Pleosporales, fungal taxonomy, molecular phylogeny, Pyrenochaeta, new genus, new combination, polyphyly
- MeSH terms
- Base Sequence, Basidiomycota, Mitosporic Fungi, DNA, Fungal, Phylogeny, RNA, Fungal, RNA, Ribosomal, RNA, Ribosomal, 28S, Plant Roots, Cucurbitaceae
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review