Cited by 236

Identification of human microRNA targets from isolated argonaute protein complexes

Beitzinger, Michaela, Peters, Lasse, Zhu, Jia Yun, Kremmer, Elisabeth, Meister, Gunter·2007·RNA Biology

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.4161/rna.4.2.4640

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • AGO immunoprecipitation has been successfully used to isolate miRNAs and their mRNA targets.

    “AGO immunoprecipitation has been successfully used to isolate miRNAs and their mRNA targets (Easow et al., 2007, Beitzinger et al., 2007, Hendrickson et al., 2008, Zhang et al., 2007, Hammell et al., 2008, Karginov et al., 2007).”

    From Cell-Type-Based Analysis of MicroRNA Profiles in the Mouse Brain (2012) · cites this paper as Beitzinger et al., 2007

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

No references could be resolved yet.

Research works printed but not linked: 34

  1. Ambros V. The functions of animal microRNAs. Nature 2004; 431:350-5.
  2. Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004; 116:281-97.
  3. Chen PY, Meister G. microRNA-guided posttranscriptional gene regulation. Biol Chem 2005; 386:1205-18.
  4. Borchert GM, Lanier W, Davidson BL. RNA polymerase III transcribes human micro- RNAs. Nat Struct Mol Biol 2006; 13:1097-101.
  5. Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN. MicroRNA genes are transcribed by RNA polymerase II. Embo J 2004; 23:4051-60.
  6. Denli AM, Tops BB, Plasterk RH, Ketting RF, Hannon GJ. Processing of primary microR- NAs by the Microprocessor complex. Nature 2004; 432:231-5.
  7. Gregory RI, Yan KP, Amuthan G, Chendrimada T, Doratotaj B, Cooch N, Shiekhattar R. The Microprocessor complex mediates the genesis of microRNAs. Nature 2004; 432:235-40.
  8. Landthaler M, Yalcin A, Tuschl T. The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis. Curr Biol 2004; 14:2162-7.
  9. Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Radmark O, Kim S, Kim VN. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003; 425:415-9.
  10. Meister G, Tuschl T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004; 431:343-9.
  11. Tomari Y, Zamore PD. Perspective: machines for RNAi. Genes Dev 2005; 19:517-29.
  12. Pillai RS, Bhattacharyya SN, Filipowicz W. Repression of protein synthesis by miRNAs: how many mechanisms? Trends Cell Biol 2007; 17:118-26.
  13. Peters L, Meister G. Argonaute proteins: mediators of RNA silencing. Mol Cell 2007; 26:611-23.
  14. Hall TM. Structure and function of argonaute proteins. Structure 2005; 13:1403-8.
  15. Patel DJ, Ma JB, Yuan YR, Ye K, Pei Y, Kuryavyi V, Malinina L, Meister G, Tuschl T. Structural biology of RNA silencing and its functional implications. Cold Spring Harb Symp Quant Biol 2006; 71:81-93.
  16. Song JJ, Joshua-Tor L. Argonaute and RNA--getting into the groove. Curr Opin Struct Biol 2006; 16:5-11.
  17. Liu J, Carmell MA, Rivas FV, Marsden CG, Thomson JM, Song JJ, Hammond SM, Joshua- Tor L, Hannon GJ. Argonaute2 is the catalytic engine of mammalian RNAi. Science 2004; 305:1437-41.
  18. Meister G, Landthaler M, Patkaniowska A, Dorsett Y, Teng G, Tuschl T. Human Argonaute2 Mediates RNA Cleavage Targeted by miRNAs and siRNAs. Mol Cell 2004; 15:185-97.
  19. Hutvágner G, Zamore PD. A microRNA in a multiple-turnover RNAi enzyme complex. Science 2002; 297:2056-60.
  20. Olsen PH, Ambros V. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of transla- tion. Dev Biol 1999; 216:671-80.
  21. Seggerson K, Tang L, Moss EG. Two genetic circuits repress the Caenorhabditis elegans heterochronic gene lin-28 after translation initiation. Dev Biol 2002; 243:215-25.
  22. Maroney PA, Yu Y, Fisher J, Nilsen TW. Evidence that microRNAs are associated with translating messenger RNAs in human cells. Nat Struct Mol Biol 2006; 13:1102-7.
  23. Nottrott S, Simard MJ, Richter JD. Human let-7a miRNA blocks protein production on actively translating polyribosomes. Nat Struct Mol Biol 2006; 13:1108-14.
  24. Petersen CP, Bordeleau ME, Pelletier J, Sharp PA. Short RNAs repress translation after initiation in mammalian cells. Mol Cell 2006; 21:533-42.
  25. Humphreys DT, Westman BJ, Martin DI, Preiss T. MicroRNAs control translation initia- tion by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function. Proc Natl Acad Sci U S A 2005; 102:16961-6.
  26. Pillai RS, Bhattacharyya SN, Artus CG, Zoller T, Cougot N, Basyuk E, Bertrand E, Filipowicz W. Inhibition of translational initiation by Let-7 MicroRNA in human cells. Science 2005; 309:1573-6.
  27. Kiriakidou M, Tan GS, Lamprinaki S, De Planell-Saguer M, Nelson PT, Mourelatos Z. An mRNA m(7)G Cap Binding-like Motif within Human Ago2 Represses Translation. Cell 2007; 129:1141-51.
  28. John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Human MicroRNA targets. PLoS Biol 2004; 2:e363.
  29. Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N. Combinatorial microRNA target predictions. Nat Genet 2005; 37:495-500.
  30. Lewis BP, Shih I, Jones-Rhoades MW, Bartel DP, Burge CB. Prediction of mammalian microRNA targets. Cell 2003; 115:787-98.
  31. Stark A, Brennecke J, Russell RB, Cohen SM. Identification of Drosophila microRNA targets. PLoS Biol 2003; 1:397-409.
  32. Didiano D, Hobert O. Perfect seed pairing is not a generally reliable predictor for miRNA- target interactions. Nat Struct Mol Biol 2006; 13:849-51.
  33. Song JJ, Smith SK, Hannon GJ, Joshua-Tor L. Crystal structure of Argonaute and its impli- cations for RISC slicer activity. Science 2004; 305:1434-7.
  34. Yuan YR, Pei Y, Ma JB, Kuryavyi V, Zhadina M, Meister G, Chen HY, Dauter Z, Tuschl T, Patel DJ. Crystal Structure of A. aeolicus Argonaute, a Site-Specific DNA-Guided Endoribonuclease, Provides Insights into RISC-Mediated mRNA Cleavage. Mol Cell 2005; 19:405-19.

Cited by

Sorted by citations

Authors
Beitzinger, M., Peters, L., Zhu, J. Y., Kremmer, E., & Meister, G.
Venue
RNA Biology
Published
2007-04
Volume
4
Issue
2
Pages
76-84
ISSN
  • 1547-6286
  • 1555-8584
Cited by
236
References
0
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review