The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
MorphoGraphX: A platform for quantifying morphogenesis in 4D
Open accessAbstract
Morphogenesis emerges from complex multiscale interactions between genetic and mechanical processes. To understand these processes, the evolution of cell shape, proliferation and gene expression must be quantified. This quantification is usually performed either in full 3D, which is computationally expensive and technically challenging, or on 2D planar projections, which introduces geometrical artifacts on highly curved organs. Here we present MorphoGraphX (www.MorphoGraphX.org), a software that bridges this gap by working directly with curved surface images extracted from 3D data. In addition to traditional 3D image analysis, we have developed algorithms to operate on curved surfaces, such as cell segmentation, lineage tracking and fluorescence signal quantification. The software's modular design makes it easy to include existing libraries, or to implement new algorithms. Cell geometries extracted with MorphoGraphX can be exported and used as templates for simulation models, providing a powerful platform to investigate the interactions between shape, genes and growth.
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Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation
Kondo, S., & Miura, T. (2010) · Science · doi:10.1126/science.1179047 · Cited by 1,651
Serial Block-Face Scanning Electron Microscopy to Reconstruct Three-Dimensional Tissue Nanostructure
Denk, W., & Horstmann, H. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020329 · Cited by 1,644
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Developmental Patterning by Mechanical Signals in Arabidopsis
Hamant, O., Heisler, M. G., Jönsson, H., Krupinski, P., Uyttewaal, M., Bokov, P., Corson, F., Sahlin, P., Boudaoud, A., Meyerowitz, E. M., et al. (2008) · Science · doi:10.1126/science.1165594 · Cited by 985
Peng, H., Ruan, Z., Long, F., Simpson, J. H., & Myers, E. W. (2010) · Nature Biotechnology · doi:10.1038/nbt.1612 · Cited by 707
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Seed vigour and crop establishment: extending performance beyond adaptation.
Finch-Savage, W. E., & Bassel, G. W. (2016) · Journal of Experimental Botany · doi:10.1093/jxb/erv490 · Cited by 1,027
Self-citationA Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis
Hervieux, N., Dumond, M., Sapala, A., Routier-Kierzkowska, A.-L., Kierzkowski, D., Roeder, A. H. K., Smith, R. S., Boudaoud, A., & Hamant, O. (2016) · Current Biology · doi:10.1016/j.cub.2016.03.004 · Cited by 256
Self-citationPérez-González, C., Ceada, G., Greco, F., Matejčić, M., Gómez-González, M., Castro, N., Menendez, A., Kale, S., Krndija, D., Clark, A. G., et al. (2021) · Nature Cell Biology · doi:10.1038/s41556-021-00699-6 · Cited by 225
Cell fate coordinates mechano-osmotic forces in intestinal crypt formation
Yang, Q., Xue, S.-L., Chan, C. J., Rempfler, M., Vischi, D., Maurer-Gutierrez, F., Hiiragi, T., Hannezo, E., & Liberali, P. (2021) · Nature Cell Biology · doi:10.1038/s41556-021-00700-2 · Cited by 183
Jiang, T., Munguia-Lopez, J. G., Gu, K., Bavoux, M. M., Flores-Torres, S., Kort-Mascort, J., Grant, J., Vijayakumar, S., De Leon-Rodriguez, A., Ehrlicher, A. J., et al. (2020) · Biofabrication · doi:10.1088/1758-5090/ab3a5c · Cited by 106
Metadata
- Authors
- Barbier de Reuille, P., Routier-Kierzkowska, A.-L., Kierzkowski, D., Bassel, G. W., Schüpbach, T., Tauriello, G., Bajpai, N., Strauss, S., Weber, A., Kiss, A., Burian, A., Hofhuis, H., Sapala, A., Lipowczan, M., Heimlicher, M. B., Robinson, S., Bayer, E. M., Basler, K., Koumoutsakos, P., Roeder, A. H., Aegerter-Wilmsen, T., Nakayama, N., Tsiantis, M., Hay, A., Kwiatkowska, D., Xenarios, I., Kuhlemeier, C., & Smith, R. S.
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2015-05-06
- Volume
- 4
- Pages
- 05864-05864
- ISSN
- 2050-084X (ISSN-L)
- OpenAlex
- W1884875365
- Cited by
- 570
- References
- 7
- FWCI
- 24.30
- Type
- journal article
- Language
- en
- Open access
- gold
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- The paper
- Barbier de Reuille, P., Routier-Kierzkowska, A.-L., Kierzkowski, D., Bassel, G. W., Schüpbach, T., Tauriello, G., Bajpai, N., Strauss, S., Weber, A., Kiss, A., Burian, A., Hofhuis, H., Sapala, A., Lipowczan, M., Heimlicher, M. B., Robinson, S., Bayer, E. M., Basler, K., Koumoutsakos, P., . . . Smith, R. S. (2015). MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife. https://doi.org/10.7554/elife.05864
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
