The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer
Open accessAbstract
Most mammalian transcription factors (TFs) and cofactors occupy thousands of genomic sites and modulate the expression of large gene networks to implement their biological functions. In this study, we describe an exception to this paradigm. TRIM33 is identified here as a lineage dependency in B cell neoplasms and is shown to perform this essential function by associating with a single cis element. ChIP-seq analysis of TRIM33 in murine B cell leukemia revealed a preferential association with two lineage-specific enhancers that harbor an exceptional density of motifs recognized by the PU.1 TF. TRIM33 is recruited to these elements by PU.1, yet acts to antagonize PU.1 function. One of the PU.1/TRIM33 co-occupied enhancers is upstream of the pro-apoptotic gene Bim, and deleting this enhancer renders TRIM33 dispensable for leukemia cell survival. These findings reveal an essential role for TRIM33 in preventing apoptosis in B lymphoblastic leukemia by interfering with enhancer-mediated Bim activation.
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Written from the paper’s full text.
TL;DR
TRIM33 is identified as a lineage dependency in B cell neoplasms that prevents apoptosis by deactivating a single enhancer upstream of the pro-apoptotic gene Bim. In murine B-ALL, TRIM33 is recruited by PU.1 to two enhancers with exceptional PU.1 motif density, and deleting the Bim −117 enhancer renders TRIM33 dispensable for leukemia cell survival.
Key findings
- A negative-selection RNAi screen of 1,126 shRNAs targeting 259 chromatin regulators in murine B-ALL identified 16 dependencies, with TRIM33 as a unique B-ALL requirement; TRIM33 knockdown caused apoptosis and reduced viability in B-ALL, 38B9, and several human B cell cancer lines, but had negligible effects on MLL-AF9/NrasG12D AML and Notch-mutant T-ALL.
- ChIP-seq in B-ALL found the two strongest TRIM33 enrichment sites at 117 kb upstream of Bim and 35 kb upstream of Atp1b3; these regions were active enhancers (H3K27ac-positive, H3K4me3-negative) and contained high densities of PU.1 motifs (17 instances at Bim −117 and 14 at Atp1b3 −35).
- PU.1 occupied Bim −117 and Atp1b3 −35 plus more than 2,600 other genomic sites; PU.1 knockdown reduced TRIM33 occupancy and H3K27ac at Bim −117, while TRIM33 knockdown increased PU.1 occupancy and H3K27ac there, indicating TRIM33 antagonizes PU.1-dependent enhancer activation.
- Bim knockdown or CRISPR-Cas9 deletion of the 1.4 kb Bim −117 element rendered B-ALL cells completely resistant to TRIM33 shRNA-induced apoptosis; three independent homozygous-deletion clones did not require TRIM33 for viability.
Methods
- Murine B-ALL cells (BCR-ABL plus Arf inactivation), 38B9, MLL-AF9/NrasG12D AML, and Notch-mutant T-ALL cells were used for negative-selection shRNA screens, competition-based viability assays, Annexin V/DAPI apoptosis assays, and double-shRNA experiments.
- Genome-wide profiling included RNA-seq after TRIM33 knockdown and ChIP-seq for TRIM33, PU.1, H3K27ac, and H3K4me3; peaks were called with MACS, and motif analysis used FIMO/MEME with the JASPAR PU.1 motif MA0080.3.
- In vivo studies used doxycycline-regulated TRIM33 shRNA transgenic mice crossed to ROSA26-rtTA-M2 mice, with flow cytometry of bone marrow and spleen; CRISPR-Cas9 with two sgRNAs flanking Bim −117 generated homozygous deletion clones.
Limitations
- The paper states that short-term TRIM33 suppression caused a modest myeloid expansion and notes that Trim33−/− mice have been shown to develop chronic myelomonocytic leukemia, so long-term TRIM33 inhibition might have pro-tumorigenic effects in certain tissues.
- The paper states that the role of AML-specific enhancers at Bim −66 kb in rendering TRIM33 dispensable in AML is speculative.
- Evident from the text: the mechanistic work is primarily in murine B-ALL and murine cell lines, with human B cell cancer lines tested mainly for sensitivity to TRIM33 knockdown rather than for the Bim enhancer mechanism.
Model-written summary. Check it against the paper before relying on it.
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Cites
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Claims the paper makes
11 of 16 cited sources checked · 5 supported · 0 flagged · accuracy not yet measured
- Findingown data
A v-Abl transformed B cell progenitor line, 38B9, and several human B cell cancer lines were sensitive to TRIM33 knockdown.
“Furthermore, a v-Abl transformed B cell progenitor line, 38B9 (Alt et al., 1984), and several human B cell cancer lines were also sensitive to TRIM33 knockdown”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Alt et al., 1984 source
- Premisecitation
Trim33−/− mice have been shown to develop chronic myelomonocytic leukemia.
“Trim33−/− mice have been shown to develop chronic myelomonocytic leukemia (Aucagne et al., 2011)”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Aucagne et al., 2011 source
The research article (p. 2) and Figure 3 (p. 4) report that Tif1g-deficient mice older than six months develop a CMML-like myeloproliferative disease. The claim captures the disease resemblance but omits the age qualifier and calls it CMML rather than CMML-like. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Findingown data
Bim-deficient B-ALL cells were completely resistant to the apoptotic effects of TRIM33 shRNAs, indicating that Bim is the critical downstream repression target of TRIM33 to maintain cell viability.
“Notably, Bim-deficient B-ALL cells were completely resistant to the apoptotic effects of TRIM33 shRNAs, indicating that Bim is the critical downstream repression target of TRIM33 to maintain cell viability”
Quote in the paperSubstantial claim - Findingown data
B cell production recovered fully in TRIM33-deficient mice upon restoring TRIM33 expression.
“we found that B cell production recovered fully in TRIM33-deficient mice upon restoring TRIM33 expression”
Quote in the paperSubstantial claim - Findingown data
AML cells possess a large cluster of active enhancers located 66 kb upstream of Bim, which is not observed in B-ALL.
“ChIP-seq analysis of H3K27ac revealed that AML cells possess a large cluster of active enhancers located 66 kb upstream of Bim, which is not observed in B-ALL”
Quote in the paperSubstantial claim
- Findingown data
Both B lymphoid and myeloid leukemia cells harbor PU.1 and TRIM33 at the Bim -117 region.
“While both B lymphoid and myeloid leukemia cells harbor PU.1 and TRIM33 at the Bim –117 region”
Quote in the paperSubstantial claim - Findingown data
Both the Bim -117 and Atp1b3 -35 regions possessed a high density of sequence motifs recognized by PU.1 (17 instances at Bim -117 and 14 instances at Atp1b3 -35).
“we found that both of these regions possessed a high density of sequence motifs recognized by PU.1 (17 instances at Bim –117 and 14 instances at Atp1b3 –35)”
Quote in the paperSubstantial claim - Findingown data
TRIM33 knockdown led to negligible effects on the viability of MLL-AF9/NrasG12D AML and Notch-mutant T-ALL cells.
“In contrast, TRIM33 knockdown led to negligible effects on the viability of MLL-AF9/NrasG12D AML and Notch-mutant T-cell acute lymphoblastic leukemia (T-ALL)”
Quote in the paperSubstantial claim - Findingown data
RNA-seq analysis in B-ALL cells following 3 or 4 days of TRIM33 knockdown revealed that Bim and Atp1b3 were the two most upregulated genes.
“we noted that Bim and Atp1b3 were the two most upregulated genes upon TRIM33 depletion”
Quote in the paperSubstantial claim - Findingown data
In a negative selection RNAi screen in murine B-ALL cells, 1,126 shRNAs targeting 259 chromatin regulators were assessed individually for effects on viability, leading to identification of 16 dependencies after applying stringent scoring criteria.
“1,126 shRNAs targeting 259 chromatin regulators were assessed individually for effects on the viability of B-ALL cells in culture, which led to the identification of 16 dependencies after applying stringent scoring criteria”
Quote in the paperSubstantial claim - Findingown data
The Bim -117 and Atp1b3 -35 regions had a much lower density of motifs for other TFs involved in B cell specific transcriptional regulation (E2A, EBF1, or PAX5).
“In contrast, we observed a much lower density of motifs for other TFs involved in B cell specific transcriptional regulation (E2A, EBF1, or PAX5)”
Quote in the paperSubstantial claim - Findingown data
Dox-dependent suppression of TRIM33 was achieved in multiple tissues of transgenic mice expressing a TRIM33 shRNA from a dox-regulated promoter.
“animals exhibited dox-dependent suppression of TRIM33 in multiple tissues”
Quote in the paperSubstantial claim - Findingown data
Atp1b3 knockdown did not alter the sensitivity of B-ALL to TRIM33 suppression.
“In contrast, Atp1b3 knockdown did not alter the sensitivity of B-ALL to TRIM33 suppression (data not shown).”
Quote in the paperNot a substantial claim - Findingown data
The genomewide pattern of TRIM33 occupancy had a strong bias for a small number of locations, with lower levels of enrichment at other sites across the genome.
“A striking attribute of the genomewide pattern of TRIM33 occupancy was its strong bias for a small number of locations, with lower levels of enrichment at other sites across the genome”
Quote in the paperSubstantial claim - Findingown data
Bim -117 and Atp1b3 -35 regions are outliers compared to other PU.1-occupied sites with regard to the overall density of PU.1 recognition motifs and the overall level of PU.1 enrichment.
“Remarkably, Bim –117 and Atp1b3 –35 regions are outliers when compared to other PU.1-occupied sites with regard to the overall density of PU.1 recognition motifs and the overall level of PU.1 enrichment”
Quote in the paperSubstantial claim - Findingown data
PU.1 knockdown led to a significant loss of TRIM33 occupancy at Bim and Atp1b3 in proportion to the loss of PU.1.
“We found that PU.1 knockdown led to a significant loss of TRIM33 occupancy at Bim and Atp1b3 in proportion to the loss of PU.1”
Quote in the paperSubstantial claim - Findingown data
Upon knockdown of TRIM33, B-ALL cells underwent apoptosis, as shown by Annexin V/DAPI staining.
“Upon knockdown of TRIM33, B-ALL cells underwent apoptosis, as shown by Annexin V/DAPI staining”
Quote in the paperSubstantial claim - Findingown data
The two strongest sites of TRIM33 enrichment in B-ALL were located 117 kb upstream of Bim (in an intron of a non-expressed gene Acoxl) and at a site 35 kb upstream of Atp1b3.
“the two strongest sites of TRIM33 enrichment in B-ALL were located 117 kb upstream of Bim (in an intron of a non-expressed gene Acoxl) and at a site 35 kb upstream of Atp1b (Figure 2B–D)”
Quote in the paperSubstantial claim - Findingown data
Knockdown of PU.1 resulted in a reduced sensitivity of B-ALL and 38B9 cells to the lethal effects of TRIM33 knockdown.
“we found that knockdown of PU.1 resulted in a reduced sensitivity of B-ALL and 38B9 cells to the lethal effects of TRIM33 knockdown”
Quote in the paperSubstantial claim - Findingnone given
One of the major phenotypic abnormalities in mice experiencing systemic TRIM33 inhibition is a selective and reversible B lymphocyte deficiency.
“one of the major phenotypic abnormalities in mice experiencing systemic TRIM33 inhibition is a selective and reversible B lymphocyte deficiency”
Quote in the paperSubstantial claim - Findingown data
A modest expansion of myeloid cells is observed upon short durations of TRIM33 suppression in vivo.
“we observe a modest expansion of myeloid cells upon short durations of TRIM33 suppression in vivo”
Quote in the paperNot a substantial claim - Findingreasoning
TRIM33 preferentially accumulates at a small number of regulatory elements in the B-ALL genome.
“TRIM33 preferentially accumulates at a small number of regulatory elements in the B-ALL genome”
Quote in the paperSubstantial claim - Study design and conductown data
The six TRIM33 shRNAs used in the screen exhibited a close correlation between knockdown efficiency and loss of B-ALL viability, suggesting on-target effects.
“The six TRIM33 shRNAs used in the screen exhibited a close correlation between knockdown efficiency and loss of B-ALL viability, suggesting on-target effects”
Quote in the paperSubstantial claim - Interpretationown data
A high density of PU.1 underlies the skewed distribution of TRIM33 genomic occupancy observed in B-ALL.
“Collectively, these results suggest that a high density of PU.1 underlies the skewed distribution of TRIM33 genomic occupancy observed in B-ALL.”
Quote in the paperSubstantial claim - Interpretationown data
A single genomic binding site at the Bim locus accounts for the entire TRIM33 requirement in preventing B-ALL apoptosis.
“This indicates that a single genomic binding site at the Bim locus accounts for the entire TRIM33 requirement in preventing B-ALL apoptosis.”
Quote in the paperSubstantial claim - Interpretationown data
TRIM33 is a lineage dependency in B cell neoplasms.
“TRIM33 is identified here as a lineage dependency in B cell neoplasms”
Quote in the paperSubstantial claim - Interpretationown data
TRIM33 is essential for the survival of neoplastic B cells.
“Taken together, these observations suggest that TRIM33 is essential for the survival of neoplastic B cells.”
Quote in the paperSubstantial claim - Interpretationown data
TRIM33 antagonizes PU.1-dependent enhancer activation as part of its essential function in B lymphoblastic leukemia.
“Collectively, these observations suggest that TRIM33 antagonizes PU.1-dependent enhancer activation as part of its essential function in B lymphoblastic leukemia.”
Quote in the paperSubstantial claim - Interpretationreasoning
The weaker B cell phenotype in the 7 day dox treatment compared to Figure 1I is accounted for by the absence of GFP gating in the 7 day dox experiment.
“This accounts for the weaker B cell phenotype in this 7 day dox treatment from the findings presented in Figure 1I, in which GFP gating was performed.”
Quote in the paperNot a substantial claim - Interpretationreasoning
The selective occupancy of TRIM33 within the active enhancer landscape may account for the minimal phenotypes observed in TRIM33-deficient mice.
“The selective occupancy of TRIM33 within the active enhancer landscape may account for the minimal phenotypes observed in TRIM33-deficient mice.”
Quote in the paperNot a substantial claim - Interpretationown data
TRIM33 prevents apoptosis in murine B-ALL cells by blocking enhancer-mediated Bim activation.
“Here we provide evidence that TRIM33 prevents apoptosis in murine B-ALL cells by blocking enhancer-mediated Bim activation.”
Quote in the paperSubstantial claim - Interpretationreasoning
The unusual enhancer selectivity of TRIM33 in B-ALL is traced to the density of PU.1.
“We trace this unusual enhancer selectivity of TRIM33 in B-ALL to the density of PU.1”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kusy et al., 2011 source
- Interpretationreasoning
The localization of TRIM33 to one lineage-specific enhancer upstream of Bim renders B-ALL cells hypersensitive to loss of TRIM33.
“Remarkably, it is the localization of TRIM33 to one lineage-specific enhancer upstream of Bim that renders B-ALL cells hypersensitive to loss of TRIM33.”
Quote in the paperSubstantial claim - Interpretationnone given
TRIM33 is the first example of a mammalian transcriptional regulator that performs an essential function through a single genomic binding site.
“To our knowledge, TRIM33 is the first example of a mammalian transcriptional regulator that performs an essential function through a single genomic binding site.”
Quote in the paperSubstantial claim - Interpretationreasoning
The similar sensitivity of normal and transformed B cells to TRIM33 inhibition implies that the regulatory mechanisms defined here in B cell leukemia are likely to have evolved to control normal B cell development.
“The similar sensitivity of normal and transformed B cells to TRIM33 inhibition implies that the regulatory mechanisms defined here in B cell leukemia are likely to have evolved to control normal B cell development.”
Quote in the paperNot a substantial claim
- Classified as probably not a substantial claim. 15
- May combine two claims. 19
Classified as probably not a substantial claim.
PremisecitationBim encodes a BH3-only domain protein with a well-established pro-apoptotic function.
“Bim encodes a BH3-only domain protein with a well-established pro-apoptotic function (Willis and Adams, 2005).”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Willis and Adams, 2005 source
May combine two claims.
Findingown dataThe level of H3K27ac is not skewed in a similar manner towards Bim -117 and Atp1b3 -35, indicating that these regions are not super-enhancers.
“The level of the active enhancer chromatin mark, H3K27ac, is not skewed in a similar manner towards these two locations, indicating that these regions are not super-enhancers”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Hnisz et al., 2013 source
The Results section, “Super-enhancers in many cell types” (page unavailable), supports using H3K27ac to identify super-enhancers. It does not report H3K27ac levels at Bim -117 or Atp1b3 -35, so it cannot verify the conclusion about those specific regions. (LLM, conf=0.87)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationThe TRIM33-occupied regions upstream of Bim and Atp1b3 were enriched for H3K27 acetylation but not for H3K4 tri-methylation, suggesting that these elements are active enhancers.
“The TRIM33-occupied regions upstream of Bim and Atp1b3 were enriched for H3K27 acetylation but not for H3K4 tri-methylation, suggesting that these elements are active enhancers”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Rada-Iglesias et al., 2011 source
The paper describes H3K27ac enrichment with little or no H3K4me3 as part of the signature of putative active enhancers (Abstract; page unavailable). It does not report TRIM33 occupancy or measurements at regions upstream of Bim and Atp1b3, so it supports the interpretation of the marks but not the claim about those specific regions. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
FindingcitationTRIM33 was identified as a unique requirement in B-ALL, whereas the majority of other dependencies had been identified in a prior AML screen.
“The majority of these factors had been identified in a prior screen that evaluated the requirement of chromatin regulators in MLL-AF9/NrasG12D acute myeloid leukemia (AML) (Zuber et al., 2011b), however TRIM33 was identified here as a unique requirement in B-ALL.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites Zuber et al., 2011b source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationLSD1 suppresses thousands of enhancers in ES cells.
“LSD1, a histone demethylase that has been shown previously to suppress active enhancers during embryonic stem (ES) cell differentiation (Whyte et al., 2012)”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites Whyte et al., 2012 source
Classified as probably not a substantial claim. May combine two claims.
PremisecitationBim is upregulated as a means to eliminate auto-reactive B cells and to prevent autoimmune disease.
“Bim is upregulated as a means to eliminate auto-reactive B cells and to prevent autoimmune disease”
Quote in the paperSubstantial claim1 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationFluorescent markers eGFP (for shRenilla) and TurboGFP (for shTRIM33) indicate shRNA-expressing cells following doxycycline treatment.
“Fluorescent markers (eGFP for shRenilla and TurboGFP for shTRIM33) were indicators of shRNA-expressing cells following doxycycline treatment.”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites Premsrirut et al., 2011 source
The Results sections “Generation of a targeting construct” and “ColA1 targeted shRNAs enable potent and reversible knockdown in ES cells” describe doxycycline-inducible GFP as a visual reporter of shRNA expression. Our copy does not establish the specific assignments of eGFP to shRenilla or TurboGFP to shTRIM33. No page numbers are available in the indexed passages. (LLM, conf=0.85)
Experimental — accuracy not yet measured - cites Dow et al., 2012 source
The Introduction (The basics of Col1a1-targeted shRNA transgenic mice; page unavailable) describes a fluorescent reporter linked to inducible shRNA expression, and the Procedure (Testing ES cell clones; page unavailable) uses GFP fluorescence to check induction after doxycycline treatment. Our copy does not establish the specific eGFP–shRenilla or TurboGFP–shTRIM33 pairings. (LLM, conf=0.87)
Experimental — accuracy not yet measured
Classified as probably not a substantial claim. May combine two claims.
PremisecitationIn humans, a reversible depletion of normal B cells is a well-tolerated side effect of the anti-CD20 antibody rituximab, which is an efficacious therapy in mature B cell neoplasms and in autoimmune disease.
“In humans, a reversible depletion of normal B cells is a well-tolerated side effect of the anti-CD20 antibody rituximab, which is an efficacious therapy in mature B cell neoplasms and in autoimmune disease”
Quote in the paperSubstantial claim1 of 2 sources checked- cites Coiffier et al., 2002 source
- cites Edwards et al., 2004 source
The Abstract (page unavailable) describes rituximab as an anti-CD20 antibody that causes transient B-cell depletion and is approved for certain CD20-positive B-cell lymphomas. The trial reports improved rheumatoid arthritis symptoms, while the adverse-events section finds similar overall adverse-event rates but notes serious infections and the need for longer-term monitoring. The claim extends efficacy from those specific conditions to mature B-cell neoplasms and autoimmune disease generally, and describes tolerability without those safety qualifications. (LLM, conf=0.82)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataPU.1 occupancy was confirmed at Bim -117 and Atp1b3 -35 in 38B9 and AML cells, but not in T-ALL.
“Using ChIP-qPCR, we also confirmed PU.1 occupancy at these two regions in 38B9 and AML cells, but not in T-ALL”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataPU.1-deficient B-ALL cells harbored reduced H3K27ac at Bim -117 and reduced Bim mRNA levels, suggesting that PU.1 is responsible for maintaining this enhancer in an active state while also facilitating TRIM33 recruitment.
“PU.1-deficient B-ALL cells also harbored reduced H3K27ac at Bim –117 and reduced Bim mRNA levels, suggesting that PU.1 is responsible for maintaining this enhancer in an active state while, paradoxically, also facilitating TRIM33 recruitment”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataKnockdown of TRIM33 led to an increase in PU.1 occupancy and H3K27 acetylation at Bim -117, suggesting that TRIM33 antagonizes PU.1 binding to DNA and suppresses enhancer activity.
“Interestingly, knockdown of TRIM33 led to an increase in PU.1 occupancy and H3K27 acetylation at Bim –117, suggesting that TRIM33 antagonizes PU.1 binding to DNA and suppresses enhancer activity”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Kusy et al., 2011 source
May combine two claims.
Findingown dataKnockdown of TRIM33 in AML does not result in apoptosis or Bim upregulation.
“knockdown of TRIM33 in AML does not result in apoptosis or Bim upregulation”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataTRIM33 knockdown led to negligible effects on the histological appearance of colon, liver, thymus, and pancreatic tissues and led to no significant changes in animal weight.
“Notably, TRIM33 knockdown led to negligible effects on the histological appearance of colon, liver, thymus, and pancreatic tissues and led to no significant changes in animal weight”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataFlow cytometry analysis of bone marrow and spleen following 1 or 4 weeks of dox administration revealed a selective loss of CD19+ and B220+ B lymphoid cells in TRIM33-deficient animals, while erythroid, myeloid, and T lymphoid populations remained intact or even increased in relative abundance.
“Flow cytometry analysis of the bone marrow and spleen following 1 or 4 weeks of dox administration revealed a selective loss of CD19+ and B220+ B lymphoid cells in TRIM33-deficient animals, while erythroid, myeloid, and T lymphoid populations remained intact or even increased in relative abundance”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataTRIM33 occupancy was observed at the same two regions in 38B9, AML, and whole spleen, but not in T-ALL.
“We also observed TRIM33 occupancy at these same two regions in 38B9, AML, and in whole spleen, but not in T-ALL”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataBim knockdown and the deletion of the Bim -117 region also rendered 38B9 cells resistant to the lethal effects of TRIM33 suppression.
“Bim knockdown and the deletion of the Bim –117 region also rendered 38B9 cells resistant to the lethal effects of TRIM33 suppression”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataPU.1 ChIP-seq analysis in B-ALL confirmed its association with Bim -117 and Atp1b3 -35, as well as with more than 2600 other genomic sites.
“ChIP-seq analysis of PU.1 in B-ALL confirmed its association with Bim –117 and Atp1b3 –35, as well as with more than 2600 other genomic sites”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn dox-treated shRen and shTRIM33 transgenic mice, the GFP percentage in total spleen was approximately 15%.
“The GFP percentage in the total spleen was approximately 15% for shTRIM33 and shRen mice on dox.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingown dataIn dox-treated shRen and shTRIM33 transgenic mice, the GFP percentage in total bone marrow was approximately 75%.
“The GFP percentage in total bone marrow was approximately 75% on dox for shRen and shTRIM33 mice.”
Quote in the paperNot a substantial claimMay combine two claims.
Interpretationown dataTRIM33 is concentrated at a small number of sites in the B-ALL genome, with two of these regions correlating with a repressive effect on the expression of nearby Atp1b3 and Bim genes.
“This analysis suggests that TRIM33 is concentrated at a small number of sites in the B-ALL genome, with two of these regions correlating with a repressive effect on the expression of nearby Atp1b3 and Bim genes.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataThe other gene expression changes incurred upon TRIM33 knockdown did not correlate with its genomic occupancy, suggesting they might be an indirect effect of B-ALL cells initiating an apoptotic response.
“The other gene expression changes incurred upon TRIM33 knockdown did not correlate with its genomic occupancy (data not shown), suggesting they might be an indirect effect of B-ALL cells initiating an apoptotic response.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataB lymphoid cells are uniquely sensitive to TRIM33 inhibition, implicating TRIM33 as a lineage dependency in cancers of B cell origin.
“Collectively, these findings suggest that B lymphoid cells are uniquely sensitive to TRIM33 inhibition, thus implicating TRIM33 as a lineage dependency in cancers of B cell origin.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataThe −117 deletion of individual CRISPR clones was further verified by Sanger sequencing.
“The −117 deletion of individual clones was further verified by Sanger sequencing.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenRenilla and Rpa3 control shRNAs were included with each 96 well plate as negative and positive controls, respectively.
“Renilla and Rpa3 control shRNAs were included with each 96 well plate as negative and positive controls, respectively.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenIf an shRNA was introduced into B-ALL cells with a day 2 GFP percentage below 5%, this sample was discarded from the screen.
“If an shRNA was introduced into B-ALL cells with a day 2 GFP percentage below 5%, this sample was discarded from the screen.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationOther bromodomain modules (e.g., BRD4) have proven to be amenable to direct chemical inhibition.
“other bromodomain modules (e.g., BRD4) have proven to be amenable to direct chemical inhibition”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites Prinjha et al., 2012 source
Probably not a substantial claim: may not pass S3 (load-bearing).
Interpretationown dataThe heterogeneity in GFP expression between total bone marrow and total spleen requires GFP gating to accurately define hematopoietic phenotypes using flow cytometry.
“This heterogeneity in GFP expression in these different tissues requires GFP gating to accurately define hematopoietic phenotypes using flow cytometry.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Interpretationown dataOther TFs are also likely to recruit TRIM33, such as TCF3/E2A.
“Our ChIP-seq analysis of TRIM33 in myeloid, B lymphoid, and T lymphoid leukemias suggests that other TFs are also likely to recruit TRIM33, such as TCF3/E2A”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenThe three independent TRIM33 shRNAs revealed similar results.
“The three independent TRIM33 shRNAs revealed similar results.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenTwo independent biological replicates were performed for each ChIP-seq experiment.
“Two independent biological replicates were performed for each ChIP-seq experiment.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningThe binding interaction between TRIM33 and PU.1 is likely cooperative on motif-rich DNA elements, which would account for the biased accumulation of TRIM33 at enhancers harboring an exceptional PU.1 density.
“This binding interaction is likely to be cooperative on motif-rich DNA elements, which would account for the biased accumulation of TRIM33 at enhancers harboring an exceptional PU.1 density.”
Quote in the paperSubstantial claimMay combine two claims.
Interpretationown dataTRIM33 is a negative regulator of enhancer activity, reminiscent of LSD1.
“The role of TRIM33 as a negative regulator of enhancer activity is reminiscent of LSD1”
Quote in the paperNot a substantial claim
The paper relies on this without support.
GFP expression is extinguished upon removing dox.
“GFP expression is extinguished upon removing dox.”
Cites
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339 · cited 1× · see citing works
“To further evaluate whether the essential function of TRIM33 is due to its occupancy at the −117 region, we employed CRISPR-Cas9 to delete this element (Cong et al., 2013; Mali et al., 2013) (Figure 4C,D).”
MethodGenome engineering using the CRISPR-Cas9 system
Ran, F. A., Hsu, P. D., Wright, J., Agarwala, V., Scott, D. A., & Zhang, F. (2013) · Nature Protocols · doi:10.1038/nprot.2013.143 · Cited by 11,133 · cited 1× · see citing works
“All sgRNAs were designed using http://crispr.mit.edu/ and cloned into the U6-sgRNA-EFS-mCherry vector following published protocols (Ran et al., 2013).”
MethodRNA-Guided Human Genome Engineering via Cas9
Mali, P., Yang, L., Esvelt, K. M., Aach, J., Guell, M., DiCarlo, J. E., Norville, J. E., & Church, G. M. (2013) · Science · doi:10.1126/science.1232033 · Cited by 9,210 · cited 1× · see citing works
“To further evaluate whether the essential function of TRIM33 is due to its occupancy at the −117 region, we employed CRISPR-Cas9 to delete this element (Cong et al., 2013; Mali et al., 2013) (Figure 4C,D).”
MethodCoiffier, B., Lepage, E., Brière, J., Herbrecht, R., Tilly, H., Bouabdallah, R., Morel, P., Van Den Neste, E., Salles, G., Gaulard, P., et al. (2002) · New England Journal of Medicine · doi:10.1056/nejmoa011795 · Cited by 5,574 · cited 1× · see citing works
“In humans, a reversible depletion of normal B cells is a well-tolerated side effect of the anti-CD20 antibody rituximab, which is an efficacious therapy in mature B cell neoplasms and in autoimmune disease (Coiffier et al., 2002; Edwards et al., 2004).”
BackgroundFIMO: scanning for occurrences of a given motif
Grant, C. E., Bailey, T. L., & Noble, W. S. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr064 · Cited by 4,247 · cited 1× · see citing works
“Using the FIMO motif analysis tool (Grant et al., 2011), we found that both of these regions possessed a high density of sequence motifs recognized by PU.”
Super-enhancers in the control of cell identity and disease
Hnisz, D., Abraham, B. J., Lee, T. I., Lau, A., Saint-André, V., Sigova, A. A., Hoke, H. A., & Young, R. A. (2013) · Cell · doi:10.1016/j.cell.2013.09.053 · Cited by 3,662 · cited 1× · see citing works
“The level of the active enhancer chromatin mark, H3K27ac, is not skewed in a similar manner towards these two locations, indicating that these regions are not superenhancers that exhibit high levels of all regulators (Figure 3—figure supplement 1) (Hnisz et al., 2013).”
BackgroundEfficacy of B-cell-targeted therapy with rituximab in patients with rheumatoid arthritis
Edwards, J. C. W., Szczepański, L., Szechiński, J., Filipowicz-Sosnowska, A., Emery, P., Close, D. R., Stevens, R. M., & Shaw, T. (2004) · New England Journal of Medicine · doi:10.1056/nejmoa032534 · Cited by 2,623 · cited 1× · see citing works
“In humans, a reversible depletion of normal B cells is a well-tolerated side effect of the anti-CD20 antibody rituximab, which is an efficacious therapy in mature B cell neoplasms and in autoimmune disease (Coiffier et al., 2002; Edwards et al., 2004).”
BackgroundA unique chromatin signature uncovers early developmental enhancers in humans
Rada-Iglesias, A., Bajpai, R., Swigut, T., Brugmann, S. A., Flynn, R. A., & Wysocka, J. (2011) · Nature · doi:10.1038/nature09692 · Cited by 2,233 · see citing works
Transcription factors: from enhancer binding to developmental control
Spitz, F., & Furlong, E. E. M. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3207 · Cited by 2,227 · see citing works
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
Zuber, J., Shi, J., Wang, E., Rappaport, A. R., Herrmann, H., Sison, E. A., Magoon, D., Qi, J., Blatt, K., Wunderlich, M., et al. (2011) · Nature · doi:10.1038/nature10334 · Cited by 1,870 · cited 5× · see citing works
“A previously described LMN shRNA library targeting chromatin regulatory proteins was used (Zuber et al., 2011b).”
BackgroundMethodInfluentialSelf-citationPlat-E: an efficient and stable system for transient packaging of retroviruses
MORITA, S., Kojima, T., & Kitamura, T. (2000) · Gene Therapy · doi:10.1038/sj.gt.3301206 · Cited by 1,660 · cited 4× · see citing works
“Additional shRNAs were included in the library to allow comprehensive targeting of all bromodomain-containing proteins. shRNA plasmids from this library were arrayed individually in 96 well plates at 50 ng/μl for retrovirus preparation using Ecotropic Plat-E cells as described (Morita et al., 2000).”
MethodInfluentialRequirement of transcription factor PU.1 in the development of multiple hematopoietic lineages
Scott, E. W., Simon, M. C., Anastasi, J., & Singh, H. (1994) · Science · doi:10.1126/science.8079170 · Cited by 1,532 · cited 1× · see citing works
“…analysis tool (Grant et al., 2011), we found that both of these regions possessed a high density of sequence motifs recognized by PU.1 (17 instances at Bim –117 and 14 instances at Atp1b3 –35), which is an essential hematopoietic TF expressed in B lymphoid and myeloid lineages (Scott et al., 1994).”
BackgroundBouillet, P., Metcalf, D., Huang, D. C. S., Tarlinton, D. M., Kay, T. W. H., Köntgen, F., Adams, J. M., & Strasser, A. (1999) · Science · doi:10.1126/science.286.5445.1735 · Cited by 1,504 · cited 1× · see citing works
“Interestingly, Bim is upregulated as a means to eliminate auto-reactive B cells and to prevent autoimmune disease, suggesting a rationale for precise modulation of enhancer activity at the Bim locus by TRIM33 to regulate adaptive immunity (Bouillet et al., 1999; Enders et al., 2003).”
BackgroundMathelier, A., Zhao, X., Zhang, A. W., Parcy, F., Worsley-Hunt, R., Arenillas, D. J., Buchman, S., Chen, C., Chou, A., Ienasescu, H., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt997 · Cited by 983 · cited 1× · see citing works
“MEME from the Jaspar database (Mathelier et al., 2014).”
The Mechanisms behind the Therapeutic Activity of BET Bromodomain Inhibition
Shi, J., & Vakoc, C. R. (2014) · Molecular Cell · doi:10.1016/j.molcel.2014.05.016 · Cited by 881 · cited 1× · see citing works
“This is in contrast to the effects of suppressing BRD4, a more general cofactor that is essential for the maintenance of many cancer types and for the homeostasis of several normal tissues (Bolden et al., 2014; Shi and Vakoc, 2014).”
BackgroundSelf-citationHatakeyama, S. (2011) · Nature reviews. Cancer · doi:10.1038/nrc3139 · Cited by 805 · cited 1× · see citing works
“TRIM33, also known as TIF1γ, belongs to the tripartite motif (TRIM)-containing protein family of E3 ubiquitin ligases (Venturini et al., 1999; Hatakeyama, 2011; Herquel et al., 2011).”
BackgroundLife in the balance: how BH3-only proteins induce apoptosis
Willis, S. N., & Adams, J. M. (2005) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2005.10.001 · Cited by 743 · see citing works
Ordered rearrangement of immunoglobulin heavy chain variable region segments
Alt, F. W., Yancopoulos, G. D., Blackwell, T. K., Wood, C., Thomas, E., Boss, M., Coffman, R., Rosenberg, N., Tonegawa, S., & Baltimore, D. (1984) · The EMBO Journal · doi:10.1002/j.1460-2075.1984.tb01955.x · Cited by 733 · cited 3× · see citing works
“Furthermore, a v-Abl transformed B cell progenitor line, 38B9 (Alt et al., 1984), and several human B cell cancer lines were also sensitive to TRIM33 knockdown (Figure 1C and Figure 1—figure supplement 1).”
BackgroundMethodInfluentialAn Optimized microRNA Backbone for Effective Single-Copy RNAi
Fellmann, C., Hoffmann, T., Sridhar, V., Hopfgartner, B., Muhar, M., Roth, M., Lai, D. Y., Barbosa, I. A. M., Kwon, J. S., Guan, Y., et al. (2013) · Cell Reports · doi:10.1016/j.celrep.2013.11.020 · Cited by 705 · see citing works
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
Whyte, W. A., Bilodeau, S., Orlando, D. A., Hoke, H. A., Frampton, G. M., Foster, C. T., Cowley, S. M., & Young, R. A. (2012) · Nature · doi:10.1038/nature10805 · Cited by 602 · cited 1× · see citing works
“The role of TRIM33 as a negative regulator of enhancer activity is reminiscent of LSD1, a histone demethylase that has been shown previously to suppress active enhancers during embryonic stem (ES) cell differentiation (Whyte et al., 2012).”
BackgroundIdentifying global regulators in transcriptional regulatory networks in bacteria
Martínez‐Antonio, A., & Collado‐Vides, J. (2003) · Current Opinion in Microbiology · doi:10.1016/j.mib.2003.09.002 · Cited by 528 · cited 1× · see citing works
“This is in stark contrast to prokaryotic species, in which TFs can occupy as few as one or two sites in an entire genome to implement precise transcriptional responses (Martı́nez-Antonio and Collado-Vides, 2003; Wunderlich and Mirny, 2009).”
ResultSteger, D. J., Lefterova, M. I., Ying, L., Stonestrom, A. J., Schupp, M., Zhuo, D. X., Vakoc, A. L., Kim, J., Chen, J., Lazar, M. A., et al. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.02076-07 · Cited by 499 · see citing works
Self-citationFAM/USP9x, a Deubiquitinating Enzyme Essential for TGFβ Signaling, Controls Smad4 Monoubiquitination
Dupont, S., Mamidi, A., Cordenonsi, M., Montagner, M., Zacchigna, L., Adorno, M., Martello, G., Stinchfield, M. J., Soligo, S., Morsut, L., et al. (2009) · Cell · doi:10.1016/j.cell.2008.10.051 · Cited by 494 · cited 1× · see citing works
“One role of TRIM33 is in the TGFβ signaling pathway, which occurs through regulation of SMAD4 mono-ubiquitination and/or by functioning as a cofactor for the TFs SMAD2 and SMAD3 (Dupont et al., 2005, 2009; He et al., 2006; Agricola et al., 2011).”
BackgroundBeard, C., Hochedlinger, K., Plath, K., Wutz, A., & Jaenisch, R. (2006) · genesis · doi:10.1002/gene.20180 · Cited by 482 · cited 2× · see citing works
“, 2012), using site-specific integration of the shRNA cassette into the Col1a1 locus of KH2 ES cells (Beard et al., 2006).”
MethodGenome-wide MyoD Binding in Skeletal Muscle Cells: A Potential for Broad Cellular Reprogramming
Cao, Y., Yao, Z., Sarkar, D., Lawrence, M., Sanchez, G. J., Parker, M. H., MacQuarrie, K. L., Davison, J., Morgan, M. T., Ruzzo, W. L., et al. (2010) · Developmental Cell · doi:10.1016/j.devcel.2010.02.014 · Cited by 480 · cited 1× · see citing works
“As examples, MyoD has been detected at ∼39,000 sites in primary myotubes and Pax5 at ∼20,000 sites in B cell progenitors (Cao et al., 2010; Revilla et al., 2012).”
BackgroundRole of SWI/SNF in acute leukemia maintenance and enhancer-mediated <i>Myc</i> regulation
Shi, J., Whyte, W. A., Zepeda-Mendoza, C. J., Milazzo, J. P., Shen, C., Roe, J.-S., Minder, J. L., Mercan, F., Wang, E., Eckersley-Maslin, M. A., et al. (2013) · Genes & Development · doi:10.1101/gad.232710.113 · Cited by 463 · see citing works
Self-citationTRIM24 links a non-canonical histone signature to breast cancer
Tsai, W.-W., Wang, Z., Yiu, T. T., Akdemir, K. C., Xia, W., Winter, S., Tsai, C., Shi, X., Schwarzer, D., Plunkett, W. K., et al. (2010) · Nature · doi:10.1038/nature09542 · Cited by 435 · cited 1× · see citing works
“The PHDbromodomain module of TRIM33 interacts with covalently modified histone tails, which can further stabilize TRIM33 chromatin occupancy and stimulate its E3 ligase activity (Tsai et al., 2010; Agricola et al., 2011; Xi et al., 2011).”
BackgroundHematopoiesis Controlled by Distinct TIF1γ and Smad4 Branches of the TGFβ Pathway
He, W., Dorn, D. C., Erdjument‐Bromage, H., Tempst, P., Moore, M. A. S., & Massagué, J. (2006) · Cell · doi:10.1016/j.cell.2006.03.045 · Cited by 391 · cited 2× · see citing works
“DOI: 10.7554/eLife.06377.001”
InfluentialGerm-Layer Specification and Control of Cell Growth by Ectodermin, a Smad4 Ubiquitin Ligase
Dupont, S., Zacchigna, L., Cordenonsi, M., Soligo, S., Adorno, M., Rugge, M., & Piccolo, S. (2005) · Cell · doi:10.1016/j.cell.2005.01.033 · Cited by 357 · cited 1× · see citing works
“In humans, a reversible depletion of normal B cells is a well-tolerated side effect of the anti-CD20 antibody rituximab, which is an efficacious therapy in mature B cell neoplasms and in autoimmune disease (Coiffier et al., 2002; Edwards et al., 2004).”
BackgroundRam, O., Goren, A., Amit, I., Shoresh, N., Yosef, N., Ernst, J., Kellis, M., Gymrek, M., Issner, R., Coyne, M., et al. (2011) · Cell · doi:10.1016/j.cell.2011.09.057 · Cited by 331 · cited 2× · see citing works
“edu/ and cloned into the U6-sgRNA-EFS-mCherry vector following published protocols (Ran et al., 2013).”
MethodA Rapid and Scalable System for Studying Gene Function in Mice Using Conditional RNA Interference
Premsrirut, P. K., Dow, L. E., Kim, S. Y., Camiolo, M., Malone, C. D., Miething, C., Scuoppo, C., Zuber, J., Dickins, R. A., Kogan, S. C., et al. (2011) · Cell · doi:10.1016/j.cell.2011.03.012 · Cited by 315 · see citing works
Enders, A., Bouillet, P., Puthalakath, H., Xu, Y., Tarlinton, D. M., & Strasser, A. (2003) · The Journal of Experimental Medicine · doi:10.1084/jem.20030411 · Cited by 295 · cited 1× · see citing works
“Interestingly, Bim is upregulated as a means to eliminate auto-reactive B cells and to prevent autoimmune disease, suggesting a rationale for precise modulation of enhancer activity at the Bim locus by TRIM33 to regulate adaptive immunity (Bouillet et al., 1999; Enders et al., 2003).”
Self-citationA Poised Chromatin Platform for TGF-β Access to Master Regulators
Xi, Q., Wang, Z., Zaromytidou, A.-I., Zhang, X. H.-F., Chow-Tsang, L.-F., Liu, J. X., Kim, H., Barlas, A., Manova-Todorova, K. O., Kaartinen, V., et al. (2011) · Cell · doi:10.1016/j.cell.2011.11.032 · Cited by 287 · cited 1× · see citing works
“The PHDbromodomain module of TRIM33 interacts with covalently modified histone tails, which can further stabilize TRIM33 chromatin occupancy and stimulate its E3 ligase activity (Tsai et al., 2010; Agricola et al., 2011; Xi et al., 2011).”
BackgroundDifferent gene regulation strategies revealed by analysis of binding motifs
Wunderlich, Z., & Mirny, L. A. (2009) · Trends in Genetics · doi:10.1016/j.tig.2009.08.003 · Cited by 282 · cited 1× · see citing works
“TRIM33 is identified here as a lineage dependency in B cell neoplasms and is shown to perform this essential function by associating with a single cis element.”
BackgroundZuber, J., McJunkin, K., Fellmann, C., Dow, L. E., Taylor, M. J., Hannon, G., & Lowe, S. (2010) · Nature Biotechnology · doi:10.1038/nbt.1720 · Cited by 277 · cited 16× · see citing works
“The overall strength of these enhancers in AML may diminish the functional significance of the −117 element, thereby rendering TRIM33 dispensable for AML survival.”
BackgroundMethodInfluentialRevilla‐i‐Domingo, R., Bilić, I., Vilagos, B., Tagoh, H., Ebert, A., Tamir, I., Smeenk, L., Trupke, J., Sommer, A., Jaritz, M., et al. (2012) · The EMBO Journal · doi:10.1038/emboj.2012.155 · Cited by 232 · see citing works
TIF1γ Controls Erythroid Cell Fate by Regulating Transcription Elongation
Bai, X., Kim, J., Yang, Z., Jurynec, M. J., Akie, T. E., Lee, J., LeBlanc, J., Sessa, A. K., Jiang, H., DiBiase, A., et al. (2010) · Cell · doi:10.1016/j.cell.2010.05.028 · Cited by 213 · cited 1× · see citing works
“TRIM33 is also known to interact with the TF SCL/TAL1 to promote transcription elongation of erythroid-specific genes, which may occur through the recruitment of FACT and P-TEFb complexes (Bai et al., 2010, 2013).”
Place your BETs: the therapeutic potential of bromodomains
Prinjha, R. K., Witherington, J., & Lee, K. (2012) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2011.12.002 · Cited by 197 · cited 1× · see citing works
“Targeting of TRIM33 is particularly attractive since other bromodomain modules (e.g., BRD4) have proven to be amenable to direct chemical inhibition (Prinjha et al., 2012).”
BackgroundWilliams, R. T., Roussel, M. F., & Sherr, C. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602030103 · Cited by 191 · cited 4× · see citing works
“Cell culture and virus production Murine B-ALL (driven by BCR-ABL and p19 inactivation) (Williams et al., 2006) and 38B9 (Alt et al.”
BackgroundMethodInfluentialBolden, J. E., Tasdemir, N., Dow, L. E., van Es, J. H., Wilkinson, J. E., Zhao, Z., Clevers, H. C., & Lowe, S. W. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.08.025 · Cited by 188 · cited 1× · see citing works
“This is in contrast to the effects of suppressing BRD4, a more general cofactor that is essential for the maintenance of many cancer types and for the homeostasis of several normal tissues (Bolden et al., 2014; Shi and Vakoc, 2014).”
BackgroundTIF1γ, a novel member of the transcriptional intermediary factor 1 family
Venturini, L., You, J., Stadler, M., Galien, R., Lallemand-Breitenbach, V., Koken, M. H. M., Mattéi, M., Ganser, A., Chambon, P., Losson, R., et al. (1999) · Oncogene · doi:10.1038/sj.onc.1202655 · Cited by 170 · cited 3× · see citing works
“transcriptional cofactors (Venturini et al., 1999).”
BackgroundInfluentialA pipeline for the generation of shRNA transgenic mice
Dow, L. E., Premsrirut, P. K., Zuber, J., Fellmann, C., McJunkin, K., Miething, C., Park, Y., Dickins, R. A., Hannon, G. J., & Lowe, S. W. (2012) · Nature Protocols · doi:10.1038/nprot.2011.446 · Cited by 159 · cited 2× · see citing works
“Renilla and TRIM33 shRNA targeted ES cells were derived by Mirimus (Cold Spring Harbor, NY) as described (Premsrirut et al., 2011; Dow et al., 2012), using site-specific integration of the shRNA cassette into the Col1a1 locus of KH2 ES cells (Beard et al.”
MethodAgricola, E., Randall, R. A., Gaarenstroom, T., Dupont, S., & Hill, C. S. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.05.020 · Cited by 158 · cited 2× · see citing works
“The PHDbromodomain module of TRIM33 interacts with covalently modified histone tails, which can further stabilize TRIM33 chromatin occupancy and stimulate its E3 ligase activity (Tsai et al., 2010; Agricola et al., 2011; Xi et al., 2011).”
BackgroundAucagne, R., Droin, N., Paggetti, J., Lagrange, B., Largeot, A., Hammann, A., Bataille, A., Martin, L., Yan, K.-P., Fenaux, P., et al. (2011) · Journal of Clinical Investigation · doi:10.1172/jci45213 · Cited by 117 · cited 4× · see citing works
“However, we observe a modest expansion of myeloid cells upon short durations of TRIM33 suppression in vivo and Trim33−/− mice have been shown to develop chronic myelomonocytic leukemia (Aucagne et al., 2011).”
BackgroundResultInfluentialHerquel, B., Ouararhni, K., & Davidson, I. (2011) · Transcription · doi:10.4161/trns.2.5.17725 · Cited by 61 · cited 1× · see citing works
“TRIM33, also known as TIF1γ, belongs to the tripartite motif (TRIM)-containing protein family of E3 ubiquitin ligases (Venturini et al., 1999; Hatakeyama, 2011; Herquel et al., 2011).”
BackgroundAdult Hematopoiesis is Regulated by TIF1γ, a Repressor of TAL1 and PU.1 Transcriptional Activity
Kusy, S., Gault, N., Ferri, F., Lewandowski, D., Barroca, V., Jaracz-Ros, A., Losson, R., & Romeo, P.-H. (2011) · Cell stem cell · doi:10.1016/j.stem.2011.02.005 · Cited by 47 · cited 6× · see citing works
“DOI: 10.7554/eLife.06377.001”
BackgroundResultInfluentialBai, X., Trowbridge, J. J., Riley, E., Lee, J. A., DiBiase, A., Kaartinen, V., Orkin, S. H., & Zon, L. I. (2012) · Developmental Biology · doi:10.1016/j.ydbio.2012.10.008 · Cited by 41 · cited 3× · see citing works
“These results are in agreement with the prior characterization of Trim33 mice, which were found to exhibit a B lymphocyte deficiency and an expansion of myeloid cells (Aucagne et al., 2011; Kusy et al., 2011; Bai et al., 2013).”
BackgroundResult
Flagged first, then by citations
Cited by
Sorted by citations
Regulation of Bim in Health and Disease
Sionov, R. V., Vlahopoulos, S., & Granot, Z. (2015) · Oncotarget · doi:10.18632/oncotarget.5492 · Cited by 225 · see citing works
“1, leading to suppression of Bim expression and protection of B lymphoblastic leukemia from apoptosis [209].”
BackgroundWood, C. D., Veenstra, H., Khasnis, S., Gunnell, A., Webb, H., Shannon-Lowe, C. D., Andrews, S., Osborne, C. S., & West, M. J. (2016) · eLife · doi:10.7554/elife.18270 · Cited by 103 · see citing works
“…murine BCL2L11 enhancer located 117 kb upstream and within ACOXL (but distinct from the EBV-targeted enhancers described here) was recently shown to be disrupted by binding of the TRIM33 transcription cofactor to prevent BCL2L11 -induced apoptosis in B lymphoblastic leukaemia ( Wang et al., 2015 ).”
BackgroundZNF410 Uniquely Activates the NuRD Component CHD4 to Silence Fetal Hemoglobin Expression
Lan, X., Ren, R., Feng, R., Ly, L. C., Lan, Y., Zhang, Z., Aboreden, N. G., Qin, K., Horton, J. R., Grevet, J. D., et al. (2020) · Molecular Cell · doi:10.1016/j.molcel.2020.11.006 · Cited by 96 · see citing works
Self-citationDelineating Crosstalk Mechanisms of the Ubiquitin Proteasome System That Regulate Apoptosis
Gupta, I., Singh, K., Varshney, N. K., & Khan, S. M. (2018) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2018.00011 · Cited by 86 · see citing works
“Developing drugs that prevent TRIM33 E3 ligase activity on Bim could offer new options for treating leukemia (Wang et al., 2015).”
BackgroundTIF1 Proteins in Genome Stability and Cancer
McAvera, R. M., & Crawford, L. (2020) · Cancers · doi:10.3390/cancers12082094 · Cited by 85 · see citing works
“Contrastingly, in B lymphoblastic leukaemia (B-ALL) TRIM33 plays an oncogenic role by preventing apoptosis [34] and TRIM33 expression was higher in advanced stages of colorectal cancer compared to earlier stages [36].”
BackgroundResultBH3-only protein BIM: An emerging target in chemotherapy
Shukla, S., Saxena, S., Singh, B. K., & Kakkar, P. (2017) · European Journal of Cell Biology · doi:10.1016/j.ejcb.2017.09.002 · Cited by 87 · see citing works
A TFIID-SAGA Perturbation that Targets MYB and Suppresses Acute Myeloid Leukemia
Xu, Y., Milazzo, J. P., Somerville, T. D. D., Tarumoto, Y., Huang, Y., Ostrander, E. L., Wilkinson, J. E., Challen, G. A., & Vakoc, C. R. (2018) · Cancer Cell · doi:10.1016/j.ccell.2017.12.002 · Cited by 73 · see citing works
“This system enables shRNA-mediated knockdown in a broad array of normal adult tissues (Bolden et al., 2014; Premsrirut et al., 2011; Wang et al., 2015).”
BackgroundInfluentialSelf-citationA transcription factor addiction in leukemia imposed by the MLL promoter sequence
Lu, B., Klingbeil, O., Tarumoto, Y., Somerville, T., Huang, Y.-H., Wei, Y.-L., Wai, D. C. C., Low, J., Milazzo, J. P., Wu, X.-L. S., et al. (2018) · Cancer Cell · doi:10.1016/j.ccell.2018.10.015 · Cited by 58 · see citing works
“1 motifs, which are triggers for outlier levels of TRIM33 recruitment to cause repression of neighboring genes Bim and Atp1b3 (Wang et al., 2015a).”
BackgroundSelf-citationYu, C., Ding, Z., Liang, H., Zhang, B., & Chen, X. (2019) · Frontiers in Oncology · doi:10.3389/fonc.2019.00979 · Cited by 65 · see citing works
PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genesPreprint
Soto‐Feliciano, Y. M., Bartlebaugh, J. M. E., Liu, Y., Rivera, F. J. S., Bhutkar, A. J., Weintraub, A. S., Buenrostro, J. D., Cheng, C. S., Regev, A., Jacks, T., et al. (2017) · Genes & Development · doi:10.1101/gad.295857.117 · Cited by 53 · see citing works
“…obtained as Sequence Read Archive-lite files, GEO accession code GSE66234, data sets GSM1617788 – GSM1617789) (Edgar et al. 2002; Barrett et al. 2012; Wang et al. 2015) at these promoter bins were divided by the corresponding ChIP input (control) reads with a pseudocount of one and then log 2…”
TRIM proteins in blood cancers
Crawford, L., Johnston, C. K., & Irvine, A. E. (2017) · Journal of Cell Communication and Signaling · doi:10.1007/s12079-017-0423-5 · Cited by 59 · see citing works
Enhancer dysfunction in leukemia
Bhagwat, A. S., Lu, B., & Vakoc, C. R. (2018) · Blood · doi:10.1182/blood-2017-11-737379 · Cited by 44 · see citing works
“Some chromatin regulators disproportionately occupy a small number of enhancer elements, such as Trim33 in B-ALL, and their inhibition therefore selectively perturbs a small number of transcripts in the genome [93].”
BackgroundSelf-citationImpact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes
Semenkovich, N. P., Planer, J. D., Ahern, P. P., Griffin, N. W., Lin, C. Y., & Gordon, J. I. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1617793113 · Cited by 45 · see citing works
Shi, X., Mihaylova, V. T., Kuruvilla, L., Chen, F., Viviano, S., Baldassarre, M., Sperandio, D., Martinez, R., Yue, P., Bates, J. G., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1608319113 · Cited by 44 · see citing works
“TRIM33 can also positively regulate cell cycle progression and survival independently of TGF-β through interactions with the anaphase-promoting complex (26) and lineage-specific transcription factors in leukocytes (19, 27, 28).”
BackgroundIsbel, L., Srivastava, R., Oey, H., Spurling, A., Daxinger, L., Puthalakath, H., & Whitelaw, E. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005693 · Cited by 33 · see citing works
“several Trim33 ChIP-seq datasets have recently been carried out in lymphoid cell lines that do not express A-Myb [20].”
BackgroundMethodMacrophage production and activation are dependent on TRIM33
Gallouët, A.-S., Ferri, F., Petit, V., Parcelier, A., Lewandowski, D., Gault, N., Barroca, V., Gras, S. L., Soler, É., Grosveld, F. G., et al. (2016) · Oncotarget · doi:10.18632/oncotarget.13872 · Cited by 35 · see citing works
Coordinated methyl readers: Functional communications in cancer
Park, I.-G., Jeon, M., Kim, H.-K., & Lee, J. M. (2021) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2021.03.015 · Cited by 29 · see citing works
Role of Enhancers in Development and Diseases
Maurya, S. S. (2021) · Epigenomes · doi:10.3390/epigenomes5040021 · Cited by 23 · see citing works
H3K18ac Primes Mesendodermal Differentiation upon Nodal Signaling
Luo, M., Bai, J., Liu, B., Yan, P., Zuo, F., Sun, H., Sun, Y., Xu, X., Song, Z., Yang, Y., et al. (2019) · Stem Cell Reports · doi:10.1016/j.stemcr.2019.08.016 · Cited by 22 · see citing works
Xiao, C., Zhang, W., Hua, M., et al. (2021) · BMC Cancer · doi:10.1186/s12885-021-08562-5 · Cited by 24 · see citing works
“Moreover, two other TRIM proteins (TRIM33 and TRIM24) have been reported as oncogene or oncogenic transcriptional activators in B-cell leukemias and prostate cancer, respectively [26, 27].”
BackgroundSekirnik, A. R., Reynolds, J. K., See, L., Bluck, J. P., Scorah, A. R., Tallant, C., Lee, B., Leszczyńska, K. B., Grimley, R. L., Storer, R. I., et al. (2022) · ACS Chemical Biology · doi:10.1021/acschembio.2c00266 · Cited by 21 · see citing works
The tripartite motif-containing 24 is a multifunctional player in human cancer
Yao, Y., Zhou, S., Yue, Y., Fu, K., & Xiao, S. (2024) · Cell & Bioscience · doi:10.1186/s13578-024-01289-3 · Cited by 19 · see citing works
“TRIM33 is identified as a crucial factor in B cell neoplasms, performing its essential function by associating with a single cis element and preventing apoptosis in B lymphoblastic leukemia by interfering with enhancer-mediated Bim activation [150].”
BackgroundMolecular mechanisms of T helper 17 cell differentiation: Emerging roles for transcription cofactors
Jiang, Y., Wang, X., & Dong, C. (2019) · Advances in immunology · doi:10.1016/bs.ai.2019.09.003 · Cited by 15 · see citing works
Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation
Tiniakou, I., Hsu, P.-F., López-Zepeda, L. S., Garipler, G., Esteva, E., Adams, N. M., Jang, G., Soni, C., Lau, C. M., Liu, F., et al. (2024) · Science Immunology · doi:10.1126/sciimmunol.adi1023 · Cited by 15 · see citing works
“Trim33 (also known as TIF1-γ ) is expressed ubiquitously but selectively controls the differentiation of erythrocytes and normal and malignant B cells ( 62–64 ); conversely, it was reported as a negative regulator of myelopoiesis ( 65 ), whereas its role in DC differentiation has not been explored.”
BackgroundFerri, F., Petit, V., Barroca, V., & Roméo, P. (2019) · Epigenetics & Chromatin · doi:10.1186/s13072-019-0288-3 · Cited by 14 · see citing works
Tan, Z., Liu, X., Yu, E., et al. (2017) · Oncology Letters · doi:10.3892/ol.2017.5787 · Cited by 14 · see citing works
“Notably gene deletion and reduced expression of TRIM8 (29,30), TRIM13 (31,32), TRIM33 (33,34) and TRIM40 (35) were observed in cancer cells.”
Novel IGH and MYC Translocation Partners in Diffuse Large B‐Cell Lymphomas
Otto, C., Scholtysik, R., Schmitz, R., Kreuz, M., Becher, C., Hummel, M., Rosenwald, A., Trümper, L. H. P., Klapper, W., Siebert, R., et al. (2016) · Genes Chromosomes and Cancer · doi:10.1002/gcc.22391 · Cited by 13 · see citing works
“TRIM33 is a transcriptional cofactor and has oncogenic features as it prevents apoptosis in murine B lymphoblastic leukemia, and is also essential for the survival of normal B-cell precursors (Wang et al., 2015).”
BackgroundThe Association between TIF1 Family Members and Cancer Stemness in Solid Tumors
Czerwińska, P., Wlodarczyk, N. A., Jaworska, A. M., & Mackiewicz, A. A. (2021) · Cancers · doi:10.3390/cancers13071528 · Cited by 11 · see citing works
“In contrast to the other TIF1 family members, TRIM33 has predominantly been identified as a tumor suppressor [29–32], although several studies imply its engagement in promoting cancer progression [33,34].”
ResultLi, L., Li, Q., Zou, Z., et al. (2023) · Cancers · doi:10.3390/cancers15020417 · Cited by 10 · see citing works
“TRIM33 has also been found to be dysfunctional in many blood cancers and is mainly considered to have tumor suppressor activity [16], with the exception of B-cell acute lymphoblastic leukemia (B-ALL), where it is identified as an oncogene [22].”
BackgroundRetractedAge‐dependent expression of cancer‐related genes in a long‐lived seabird
Meitern, R., Fort, J., Giraudeau, M., Rattiste, K., Sild, E., & Sepp, T. (2020) · Evolutionary Applications · doi:10.1111/eva.13024 · Cited by 8 · see citing works
“Lower expression in old birds, which possibly lowers cancer risk Wang et al. (2015), Lee (2018) Ubiquitin-specific proteases (USP) USP6, also known as TRE17 Upregulation of USP6 leads to bone neoplasms, and this gene is therefore considered as an oncogene.”
BackgroundPerspective of Immune Checkpoint Inhibitors in Thymic Carcinoma
Kaira, K., Imai, H., & Kagamu, H. (2021) · Cancers · doi:10.3390/cancers13051065 · Cited by 9 · see citing works
Aizaz, M., Kiani, Y. S., Nisar, M., et al. (2023) · Genes · doi:10.3390/genes14030667 · Cited by 9 · see citing works
“The members of TRIM family proteins are involved in a wide range of cellular processes, including signal transduction [1], transcription [2], cell cycle [3], apoptosis [4], and development [5].”
BackgroundShen, X., Li, X., Wu, T., Guo, T., Lv, J., He, Z., Luo, M., Zhu, X., Tian, Y., Lai, W., et al. (2024) · Cellular and Molecular Immunology · doi:10.1038/s41423-024-01179-1 · Cited by 8 · see citing works
“The primers [40, 81] used in this study are listed in Table S8.”
BackgroundMethodResultInfluentialPrognostic role of Tif1γ expression and circulating tumor cells in patients with breast cancer
Cai, F., Cai, L., Zhou, Z., Pan, X., Wang, M., Chen, S., Luis, M. A., Cen, C., & Biskup, E. M. (2019) · Molecular Medicine Reports · doi:10.3892/mmr.2019.10033 · Cited by 7 · see citing works
“Notably, Tif1γ performs this function by associating with a single DNA cis element (24-26).”
BackgroundGermanò, G., Porazzi, P., & Felix, C. A. (2022) · Developmental Dynamics · doi:10.1002/dvdy.477 · Cited by 6 · see citing works
“1.(60) Our findings in vlad tepes (gata1a-m651) mutant embryos in which mllt3 expression in the posterior ICM is markedly diminished but not completely lacking in the absence of gata1a, suggest that mllt3 expression is, at least in part, gata1a-dependent.”
BackgroundFu, H., Zhou, H., Qiu, Y., et al. (2021) · Frontiers in Oncology · doi:10.3389/fonc.2021.765544 · Cited by 6 · see citing works
TRIM33 Is a Co-Regulator of Estrogen Receptor Alpha
Romo, B. A., Karakyriakou, B., Cressey, L. E., Brauer, B. L., Yang, H.-J., Warren, A., Johnson, A. L., Kettenbach, A., & Miller, T. W. (2024) · Cancers · doi:10.3390/cancers16050845 · Cited by 5 · see citing works
“Cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; Corning) with 10% fetal bovine serum (FBS; R&D Systems, Minneapolis, MN, USA).”
MethodTrim33 is required for appropriate development of pre-cardiogenic mesoderm
Rajderkar, S. S., Mann, J. M., Panaretos, C., Yumoto, K., Li, H., Mishina, Y. M., Ralston, B., & Kaartinen, V. (2019) · Developmental Biology · doi:10.1016/j.ydbio.2019.03.018 · Cited by 5 · see citing works
“…Trim33 mutants show defects in neural stem cell differentiation (Falk et al., 2014), in hematopoiesis (Quere et al., 2014; Tanaka et al., 2018; Wang et al., 2015), in malignant transformation (Aucagne et al., 2011; Pommier et al., 2015; Vincent et al., 2012) and in other physiological…”
BackgroundZNF410 uniquely activates the NuRD component CHD4 to silence fetal hemoglobin expressionPreprint
Lan, X., Ren, R., Feng, R., Ly, L. C., Lan, Y., Zhang, Z., Aboreden, N. G., Qin, K., Horton, J. R., Grevet, J. D., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.31.274324 · Cited by 4 · see citing works
Self-citationThe roles of ubiquitination‐mediated intrinsic apoptotic signalling in cancer therapy
Che, T., & Lin, Z. (2022) · Clinical and Translational Discovery · doi:10.1002/ctd2.41 · Cited by 3 · see citing works
Jawed, B., Kanwal, R., Zakir, S. K., Gaudio, F., Esposito, J. E., Ishaqui, A. A., Martinotti, S., Botteghi, M., & Toniato, E. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1764253 · Cited by 2 · see citing works
The bromodomain acyl-lysine readers in human health and disease
Tchara, P.-E. K., Lashgari, A., & Lambert, J. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-823376-4.00004-5 · Cited by 2 · see citing works
Otsuki, T., Ishizuka, K., Eto, H., et al. (2024) · Journal of General Internal Medicine · doi:10.1007/s11606-024-08794-8 · Cited by 1 · see citing works
“2,17 Considering that malignant lymphoma is associated with autoantibody production, 18 it is possible that in this case DLBCL did not arise due to anti-TIF-1γ antibodies but rather that DLBCL led to the production of anti-TIF-1γ antibodies, triggering dermatomyositis.”
RING finger protein family in leukemia (Review)
Wang, Y., Zhao, Y., & Zhang, J. (2025) · Molecular Medicine Reports · doi:10.3892/mmr.2025.13727 · Cited by 1 · see citing works
TIF1γ regulates stability of regulatory T cells during inflammation
Contreras-Castillo, E., Zambrano-Romero, J. D., Núñez-Martínez, H. N., Marcial-Medina, C., Orozco-Cordoba, J., Ríos-Ramírez, D. B., Muñoz-Paleta, O., Pérez-Vázquez, D., Cabezas, A., García-Patiño, M. G., et al. (2026) · Nature Immunology · doi:10.1038/s41590-026-02603-6 · Cited by 1 · see citing works
“…; however, the While the role of TIF1γ in the immune system has been previously explored in HSCs, natural killer T cells, macrophages, B cells, T H 17 cells and, more recently, dendritic cells 5,20,35,50–54 , the relevance of TIF1γ for T reg cell function and stability has been largely ignored.”
Opportunities for Targeting Gene Regulatory Factors in B-Cell Acute Lymphoblastic Leukemia
Ott, C. J. (2017) · International Journal of Hematologic Oncology · doi:10.2217/ijh-2017-0018 · Cited by 1 · see citing works
Sekirnik, A. R., Reynolds, J., See, L., et al. (2022) · ChemRxiv · doi:10.26434/chemrxiv-2022-vnf6p
Nimer, S. D., & Ye, X. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.734516921.793562374
Xiao, C., Zhang, W., Hua, M., et al. (2021) · Research Square · doi:10.21203/rs.3.rs-225005/v1
Ciblage thérapeutique de la réponse au stress cellulaire dans l'ostéosarcome
Moukengué, B. (2019) · theses.fr (ABES) · doi:10.70675/26cb2736z4fbdz42d2zabcbzca5db0a782e1
Rôle de TRIM33 dans l'immunothérapie anti-tumorale radio-induite
Assouvie, A. (2021) · theses.fr (ABES) · doi:10.70675/bc108f50z5815z424dz84c9z480836dbb865
TIF1 Family Proteins as Modulators of Cell Death: Mechanisms and Therapeutic Opportunities
Yang, D., & Chen, Y. (2026) · Biomolecules · doi:10.3390/biom16050719
“…purine-rich box-1 (PU.1)/TRIM33-co-occupied enhancer upstream of the pro-apoptotic gene Bcl-2 interacting mediator of cell death ( BIM ), thereby limiting enhancer-mediated BIM expression and sustaining leukemia cell survival; deletion of this enhancer renders TRIM33 dispensable for survival [22].”
Influential
- Authors
- Wang, E., Kawaoka, S., Roe, J.-S., Shi, J., Hohmann, A. F., Xu, Y., Bhagwat, A. S., Suzuki, Y., Kinney, J. B., & Vakoc, C. R.
- Affiliations
- Cold Spring Harbor Laboratory (US)
- The University of Tokyo (JP)
- ORCID
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2015-04-28
- Volume
- 4
- Pages
- e06377-e06377
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC4409649
- OpenAlex
- W2098764195
- Semantic Scholar
- cf1f8518c276fc41bdd8ec32e2cdc36ad87560b9
- Cited by
- 54
- References
- 47
- Citations by year
- 2026: 3 · 2025: 1 · 2024: 5 · 2023: 3 · 2022: 3 · 2021: 8 · 2020: 4 · 2019: 8 · 2018: 4 · 2017: 5 · 2016: 5 · 2015: 2
- FWCI
- 2.10
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
- Europe PMC (PubMed Central) (submittedVersion, cc-by)
- PubMed Central (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Cancer Center (NCC) (Cold Spring Harbor Laboratory CA455087)
- Alex's Lemonade Stand Foundation for Childhood Cancer (A award)
- Burroughs Wellcome Fund (BWF) (Career award for medical scientist)
- Japan Society for the Promotion of Science (JSPS) (postdoctoral fellowship)
- SASS Foundation for Medical Research (postdoctoral fellowship)
- National Cancer Institute (NCI) (NCI F30 CA186632)
- Boehringer Ingelheim Fonds (BIF) (PhD fellowship)
- V Foundation for Cancer Research
- National Institutes of Health (NIH) (NCI RO1 CA174793)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Acute Lymphoblastic Leukemia research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- TRIM33, B-cell acute lymphoblastic leukemia, apoptosis, enhancers, building information modeling, PU.1, transcriptional cofactors, transcription factor binding motifs
- MeSH terms
- Bcl-2-Like Protein 11, Proto-Oncogene Protein Spi-1, Animals, B-Lymphocytes, Binding Sites, Cell Survival, Enhancer Elements, Genetic, Humans
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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