A reverse transcriptase ribozyme
Open accessAbstract
A highly evolved RNA polymerase ribozyme was found to also be capable of functioning as a reverse transcriptase, an activity that has never been demonstrated before for RNA. This activity is thought to have been crucial for the transition from RNA to DNA genomes during the early history of life on Earth, when it similarly could have arisen as a secondary function of an RNA-dependent RNA polymerase. The reverse transcriptase ribozyme can incorporate all four dNTPs and can generate products containing up to 32 deoxynucleotides. It is likely that this activity could be improved through evolution, ultimately enabling the synthesis of complete DNA genomes. DNA is much more stable compared to RNA and thus provides a larger and more secure repository for genetic information.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The ribozyme can incorporate all four deoxynucleoside 5'-triphosphates at a rate of about one addition per minute and can generate products containing up to 32 deoxynucleotides.
“The ribozyme can incorporate all four deoxynucleoside 5 ′ -triphosphates at a rate of about one addition per minute and can generate products containing up to 32 deoxynucleotides.”
From Protocells and RNA Self-Replication (2018) · cites this paper as Samanta and Joyce 2017
The Abstract states that the ribozyme incorporates all four dNTPs and produces products containing up to 32 deoxynucleotides. The Results report a rate of 1.1 min⁻¹ only for the initial burst, followed by a slower phase at 0.029 min⁻¹; the claim omits that qualification. (LLM, conf=0.86)
Experimental — accuracy not yet measuredThe most highly optimized class I polymerase also has the ability to synthesize DNA polymers on an RNA template.
“This most highly optimized class I polymerase also has the ability to synthesize DNA polymers on an RNA template”
From Protocells and RNA Self-Replication (2018) · cites this paper as Samanta and Joyce 2017
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
THE MAJOR TRANSITIONS OF EVOLUTION
Leigh, E. G., Smith, J. M., & Szathmáry, E. (1995) · Evolution · doi:10.1111/j.1558-5646.1995.tb04464.x · Cited by 3,432 · see citing works
Gilbert, W. (1986) · Nature · doi:10.1038/319618a0 · Cited by 2,721 · see citing works
The Structural Basis of Ribosome Activity in Peptide Bond Synthesis
Nissen, P., Hansen, J., Ban, N., Moore, P. B., & Steitz, T. A. (2000) · Science · doi:10.1126/science.289.5481.920 · Cited by 2,269 · see citing works
The antiquity of RNA-based evolution.
Joyce, G. F. (2002) · Nature · doi:10.1038/418214a · Cited by 1,070 · see citing works
Self-citationIsolation of New Ribozymes from a Large Pool of Random Sequences
Bartel, D. P., & Szostak, J. W. (1993) · Science · doi:10.1126/science.7690155 · Cited by 900 · see citing works
RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension.
Johnston, W. K., Unrau, P. J., Lawrence, M. S., Glasner, M. E., & Bartel, D. P. (2001) · Science · doi:10.1126/science.1060786 · Cited by 768 · see citing works
Ribozyme-catalyzed transcription of an active ribozyme
Wochner, A., Attwater, J., Coulson, A., & Holliger, P. (2011) · Science · doi:10.1126/science.1200752 · Cited by 399 · see citing works
Amplification of RNA by an RNA polymerase ribozyme
Horning, D. P., & Joyce, G. F. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1610103113 · Cited by 261 · see citing works
Self-citationRNA-catalysed RNA polymerization using nucleoside triphosphates
Ekland, E. H., & Bartel, D. P. (1996) · Nature · doi:10.1038/382373a0 · Cited by 250 · see citing works
Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
Zaher, H. S., & Unrau, P. J. (2007) · RNA · doi:10.1261/rna.548807 · Cited by 203 · see citing works
A cross-chiral RNA polymerase ribozyme
Sczepanski, J. T., & Joyce, G. F. (2014) · Nature · doi:10.1038/nature13900 · Cited by 186 · see citing works
Self-citationNonenzymic template-directed synthesis on oligodeoxycytidylate sequences in hairpin oligonucleotides
Wu, T., & Orgel, L. E. (1992) · Journal of the American Chemical Society · doi:10.1021/ja00027a040 · Cited by 106 · see citing works
Freeland, S. J., Knight, R. D., & Landweber, L. F. (1999) · Science · doi:10.1126/science.286.5440.690 · Cited by 98 · see citing works
RNA-Catalyzed RNA Ligation on an External RNA Template
McGinness, K. E., & Joyce, G. F. (2002) · Chemistry & Biology · doi:10.1016/s1074-5521(02)00110-2 · Cited by 52 · see citing works
Self-citationConversion of Biosynthetic Precursors of RNA to Those of DNA by Photoredox Chemistry
Ritson, D. J., & Sutherland, J. D. (2014) · Journal of Molecular Evolution · doi:10.1007/s00239-014-9617-0 · Cited by 34 · see citing works
Chemical fidelity of an RNA polymerase ribozyme
Attwater, J., Tagami, S., Kimoto, M., Butler, K., Kool, E. T., Wengel, J., Herdewijn, P., Hirao, I., & Holliger, P. (2013) · Chemical Science · doi:10.1039/c3sc50574j · Cited by 33 · see citing works
Åström, H., Limén, E., & Strömberg, R. (2004) · Journal of the American Chemical Society · doi:10.1021/ja0477468 · Cited by 25 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Protocells and RNA Self-Replication
Joyce, G. F., & Szostak, J. W. (2018) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a034801 · Cited by 308 · see citing works
Self-citationFundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes
Micura, R., & Höbartner, C. (2020) · Chemical Society Reviews · doi:10.1039/d0cs00617c · Cited by 264 · see citing works
Selective prebiotic formation of RNA pyrimidine and DNA purine nucleosides
Xu, J., Chmela, V., Green, N. J., Russell, D. A., Janicki, M. J., Góra, R. W., Szabla, R., Bond, A. D., & Sutherland, J. D. (2020) · Nature · doi:10.1038/s41586-020-2330-9 · Cited by 176 · see citing works
Comparing proteins and nucleic acids for next-generation biomolecular engineering
Pugh, G., Burns, J. R., & Howorka, S. (2018) · Nature Reviews Chemistry · doi:10.1038/s41570-018-0015-9 · Cited by 58 · see citing works
Human DNA polymerase η has reverse transcriptase activity in cellular environments
Su, Y. R., Ghodke, P. P., Egli, M., Li, L., Wang, Y., & Guengerich, F. P. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra119.007925 · Cited by 51 · see citing works
The difficult case of an RNA-only origin of life
Vay, K. K. L., & Mutschler, H. (2019) · Emerging Topics in Life Sciences · doi:10.1042/etls20190024 · Cited by 46 · see citing works
Promiscuous Ribozymes and Their Proposed Role in Prebiotic Evolution
Janzen, E., Blanco, C., Peng, H., Kenchel, J., & Chen, I. A. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.9b00620 · Cited by 44 · see citing works
Prebiotic Photochemical Coproduction of Purine Ribo- and Deoxyribonucleosides
Xu, J., Green, N. J., Russell, D. A., Liu, Z., & Sutherland, J. D. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.1c07403 · Cited by 38 · see citing works
Kim, Y., Opron, K., & Burton, Z. F. (2019) · Life · doi:10.3390/life9020037 · Cited by 38 · see citing works
3′-End labeling of nucleic acids by a polymerase ribozyme
Samanta, B., Horning, D. P., & Joyce, G. F. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky513 · Cited by 29 · see citing works
Self-citationRNA-Catalyzed Polymerization of Deoxyribose, Threose, and Arabinose Nucleic Acids
Horning, D. P., Bala, S., Chaput, J. C., & Joyce, G. F. (2019) · ACS Synthetic Biology · doi:10.1021/acssynbio.9b00044 · Cited by 25 · see citing works
Self-citationOn the origin of life: an RNA-focused synthesis and narrative
Fine, J. L., & Pearlman, R. E. (2023) · RNA · doi:10.1261/rna.079598.123 · Cited by 25 · see citing works
Kondratyeva, L. G., Dyachkova, M. S., & Galchenko, A. V. (2022) · Biochemistry (Moscow) · doi:10.1134/s0006297922020079 · Cited by 18 · see citing works
The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases
Mäkinen, J., Shin, Y., Vieras, E., Virta, P., Metsä‐Ketelä, M., Murakami, K. S., & Belogurov, G. A. (2021) · Nature Communications · doi:10.1038/s41467-021-21005-w · Cited by 16 · see citing works
Viroids-First—A Model for Life on Earth, Mars and Exoplanets
Moelling, K., & Broecker, F. (2019) · Geosciences · doi:10.3390/geosciences9050241 · Cited by 15 · see citing works
OMEGA-guided DNA polymerases enable random mutagenesis in a tunable window
Liu, L.-H., Lei, W., Zhang, Z., Lai, S., Xu, B., Ge, Q., Luo, J., Yang, M., Zhang, Y., Chen, J., et al. (2025) · Trends in biotechnology · doi:10.1016/j.tibtech.2025.02.011 · Cited by 14 · see citing works
Emerging Frontiers in the Study of Molecular Evolution
Liberles, D. A., Chang, B. S. W., Geiler‐Samerotte, K., Goldman, A. D., Hey, J., Kaçar, B., Meyer, M. M., Murphy, W. J., Posada, D., & Storfer, A. T. (2020) · Journal of Molecular Evolution · doi:10.1007/s00239-020-09932-6 · Cited by 12 · see citing works
Transitioning to DNA genomes in an RNA world
Cojocaru, R., & Unrau, P. J. (2017) · eLife · doi:10.7554/elife.32330 · Cited by 12 · see citing works
The 3 31 Nucleotide Minihelix tRNA Evolution Theorem and the Origin of Life
Lei, L., & Burton, Z. F. (2023) · Life · doi:10.3390/life13112224 · Cited by 11 · see citing works
Self-empowerment of life through RNA networks, cells and viruses
Villarreal, L. P., & Witzany, G. (2023) · F1000Research · doi:10.12688/f1000research.130300.2 · Cited by 10 · see citing works
The Role of Reverse Transcriptase in the Origin of Life
Mustafin, R. N., & Хуснутдинова, Э. К. (2019) · Biochemistry (Moscow) · doi:10.1134/s0006297919080030 · Cited by 9 · see citing works
RNA Polymerase Ribozyme That Recognizes the Template–Primer Complex through Tertiary Interactions
Kakoti, A., & Joyce, G. F. (2023) · Biochemistry · doi:10.1021/acs.biochem.3c00091 · Cited by 7 · see citing works
Self-citationThe origin of genetic and metabolic systems: Evolutionary structuralinsights
Deng, S. (2023) · Heliyon · doi:10.1016/j.heliyon.2023.e14466 · Cited by 7 · see citing works
Genome Evolution from Random Ligation of RNAs of Autocatalytic Sets
Broecker, F. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms222413526 · Cited by 6 · see citing works
RNA Replication and the RNA Polymerase Ribozyme
Wachowius, F., & Holliger, P. (2021) · Wiley eBooks · doi:10.1002/9783527814527.ch13 · Cited by 7 · see citing works
Physical foundations of biological complexity
Wolf, Y. I., Katsnelson, M. I., & Koonin, E. V. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1807890115 · Cited by 151 · see citing works
Selection of Early Life Codons by Ultraviolet Light
Kufner, C. L., Krebs, S., Fischaleck, M., Philippou‐Massier, J., Blum, H., Bucher, D., Braun, D., Zinth, W., & Mast, C. B. (2025) · ACS Central Science · doi:10.1021/acscentsci.4c01623 · Cited by 6 · see citing works
Ribozymes as Therapeutic Agents against Infectious Diseases
Wong, B. C., Shahid, U., & Tan, H. S. (2022) · IntechOpen eBooks · doi:10.5772/intechopen.107141 · Cited by 6 · see citing works
Self-empowerment of life through RNA networks, cells and viruses
Villarreal, L. P., & Witzany, G. (2023) · F1000Research · doi:10.12688/f1000research.130300.1 · Cited by 11 · see citing works
Cellular and viral RNA polymerases: evolutionary insights into eukaryotic origins
Wong, K. Y., Feng, X., Wang, X., Ji, X., & Zhou, Z. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.11.008 · Cited by 5 · see citing works
Ni, P., Li, C., Fu, Y., Stover, N. A., & Li, L. (2025) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2025.138963 · Cited by 5 · see citing works
Physicochemical Processes That Probably Originated Life
Коваленко, С. П. (2020) · Russian Journal of Bioorganic Chemistry · doi:10.1134/s1068162020040093 · Cited by 4 · see citing works
Setterholm, N. A., Haratipour, P., Kashemirov, B. A., McKenna, C. E., & Joyce, G. F. (2020) · Biochemistry · doi:10.1021/acs.biochem.0c00779 · Cited by 5 · see citing works
Self-citationThe RNA-DNA world and the emergence of DNA-encoded heritable traits
Roy, S., & Sengupta, S. (2024) · RNA Biology · doi:10.1080/15476286.2024.2355391 · Cited by 3 · see citing works
Did organs precede organisms in the origin of life?
Baquero, F., Bever, G. S., de Lorenzo, V., Lanza, V. F., & Briones, C. (2024) · microLife · doi:10.1093/femsml/uqae025 · Cited by 3 · see citing works
Challenges for Accurate Quantification of RNA
Hasegawa, T., Hapsari, D., & Iwahashi, H. (2021) · Reviews in Agricultural Science · doi:10.7831/ras.9.0_1 · Cited by 4 · see citing works
A polymerase ribozyme increases copying fidelity through pyrophosphate-mediated RNA repair
Kent, A. D., Yang, L. L., Cole, K. H., Lee, I., & Lupták, A. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2606892123 · Cited by 2 · see citing works
Functional RNA mining using random high-throughput screening
Liu, L., Chen, J., Lai, S., Zhao, X., Yang, M., Wu, Y., Zhang, Z., & Jiang, A. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae1173 · Cited by 1 · see citing works
Ma, W., & Liang, Y. (2022) · Royal Society of Chemistry eBooks · doi:10.1039/9781839164798-00347 · Cited by 2 · see citing works
Elucidating the Self-cleavage Dynamics of Hairpin Ribozyme by Mode-decomposed Infrared Spectroscopy
Gulzar, A., Noetzel, J., Forbert, H., & Marx, D. (2023) · The Journal of Physical Chemistry Letters · doi:10.1021/acs.jpclett.3c01724 · Cited by 1 · see citing works
Origin of DNA Repair in the RNA World
Bernstein, H., & Bernstein, C. (2020) · IntechOpen eBooks · doi:10.5772/intechopen.93822 · Cited by 1 · see citing works
Koonin, E. V., Wolf, Y. I., & Katsnelson, M. I. (2021) · Elsevier eBooks · doi:10.1016/b978-0-323-90752-1.00004-3 · Cited by 1 · see citing works
An antiviral self-replicating molecular heterotrophPreprint
Shapiro, A., Rosenberg, A., Levy-Zamir, A., Bassali, L., Ittah, S., Abu-Horowitz, A., & Bachelet, I. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.12.248997
Chemical Modifications in Natural and Engineered Ribozymes
Kath‐Schorr, S. (2021) · Wiley eBooks · doi:10.1002/9783527814527.ch18
Cojocaru, R., & Unrau, P. J. (2021) · Wiley eBooks · doi:10.1002/9783527814527.ch12
Происхождение генетического кода и трансляции в рамках современных концепций происхождения жизни
Кондратьева, Л. Г., Дьячкова, М. С., & Galchenko, A. V. (2022) · Biochemistry (Moscow) · doi:10.31857/s0320972522010043
Kent, A. D., Burke, C. R., & Lupták, A. (2021) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0029295
Cojocaru, R., & Unrau, P. J. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819460-7.00334-0
mRNA Covid-19 Pharmaceuticals and the Spike Antigen
Mueller, S. (2022) · Springer eBooks · doi:10.1007/978-3-031-18903-6_10
Appraisal of Some of the Key Postulates Underlying mRNA Vaccines
Mueller, S. (2022) · Springer eBooks · doi:10.1007/978-3-031-18903-6_2
Caetano‐Anollés, G. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-822563-9.00046-9
Piast, R. W. (2024) · Theory in Biosciences · doi:10.1007/s12064-024-00417-4
Liu, Z. (2024) · F1000Research · doi:10.12688/f1000research.151912.1
From ancient catalytic folds to retrotransposons and retroviruses
Kyriakou, E., & Magiorkinis, G. (2026) · Trends in Microbiology · doi:10.1016/j.tim.2026.03.003 · Cited by 1 · see citing works
Broecker, F. (2026) · Springer eBooks · doi:10.1007/978-3-032-24295-2_10 · Cited by 1 · see citing works
- Authors
- Samanta, B., & Joyce, G. F.
- Affiliations
- Salk Institute for Biological Studies (US)
- Corresponding author
- Joyce, Gerald F
- ORCID
- Joyce, Gerald F
- Venue
- eLife
- Publisher
- eLife Sciences Publications, Ltd
- Published
- 2017-09-26
- Volume
- 6
- ISSN
- 2050-084X (ISSN-L)
- PMC
- PMC5665644
- OpenAlex
- W2759855939
- Cited by
- 57
- References
- 17
- Citations by year
- 2026: 3 · 2025: 4 · 2024: 6 · 2023: 8 · 2022: 6 · 2021: 10 · 2020: 8 · 2019: 6 · 2018: 5 · 2017: 1
- FWCI
- 2.99
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- eLife (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- National Aeronautics and Space Administration (NNX14AK15G)
- Simons Foundation (287624)
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- RNA-dependent RNA polymerase, RNA to DNA transition, origin of life, dNTP incorporation, deoxynucleotide synthesis, RNA evolution, genetic information storage
- MeSH terms
- DNA, RNA, RNA, Catalytic, Reverse Transcription
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review