Andrews, Simon

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

Smallwood, S. A., Lee, H. J., Angermueller, C., Krueger, F., Saadeh, H., Peat, J., Andrews, S. R., Stegle, O., Reik, W., & Kelsey, G. (2014) · Nature Methods

Epigenetics and DNA MethylationSingle-cell and spatial transcriptomics

Cited by 1,125

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

Mifsud, B., Tavares-Cadete, F., Young, A. N., Sugar, R., Schoenfelder, S., Ferreira, L., Wingett, S. W., Andrews, S., Grey, W., Ewels, P. A., et al. (2015) · Nature Genetics

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 990

The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells

Seisenberger, S., Andrews, S., Krueger, F., Arand, J., Walter, J., Santos, F., Popp, C., Thienpont, B., Dean, W., & Reik, W. (2012) · Molecular Cell

Epigenetics and DNA MethylationPluripotent Stem Cells Research

Cited by 973

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

Schoenfelder, S., Furlan-Magaril, M., Mifsud, B., Tavares-Cadete, F., Sugar, R., Javierre, B.-M., Nagano, T., Katsman, Y., Sakthidevi, M., Wingett, S. W., et al. (2015) · Genome Research

Genomics and Chromatin DynamicsChromosomal and Genetic Variations

Cited by 460

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome

Schoenfelder, S., Sugar, R., Dimond, A., Javierre, B.-M., Armstrong, H., Mifsud, B., Dimitrova, E., Matheson, L., Tavares-Cadete, F., Furlan-Magaril, M., et al. (2015) · Nature Genetics

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 398

Global reorganization of the nuclear landscape in senescent cells

Chandra, T., Ewels, P. A., Schoenfelder, S., Furlan-Magaril, M., Wingett, S. W., Kirschner, K., Thuret, J.-Y., Andrews, S., Fraser, P., & Reik, W. (2015) · Cell Reports

Genomics and Chromatin DynamicsNuclear Structure and Function

Cited by 348

Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells

Hernando-Herraez, I., Evano, B., Stubbs, T., Commere, P.-H., Jan Bonder, M., Clark, S., Andrews, S., Tajbakhsh, S., & Reik, W. (2019) · Nature Communications

Epigenetics and DNA MethylationSingle-cell and spatial transcriptomics

Cited by 236

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes

Krueger, F., & Andrews, S. R. (2016) · F1000Research

Genomics and Phylogenetic StudiesGenomics and Chromatin Dynamics

Cited by 163

Large scale loss of data in low-diversity Illumina sequencing libraries can be recovered by deferred cluster calling

Krueger, F., Andrews, S. R., & Osborne, C. S. (2011) · PLoS ONE

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 102

ACF chromatin-remodeling complex mediates stress-induced depressive-like behavior

Sun, H., Damez-Werno, D. M., Scobie, K. N., Shao, N.-Y., Dias, C., Rabkin, J., Koo, J. W., Korb, E., Bagot, R. C., Ahn, F. H., et al. (2015) · Nature Medicine

Stress Responses and CortisolTreatment of Major Depression

Cited by 91

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle

Furlan-Magaril, M., Ando-Kuri, M., Arzate-Mejía, R. G., Morf, J., Cairns, J., Román-Figueroa, A., Tenorio-Hernández, L., Poot-Hernández, A. C., Andrews, S., Várnai, C., et al. (2021) · Genome Biology

Genomics and Chromatin DynamicsCircadian rhythm and melatonin

Cited by 39

Ageing is associated with molecular signatures of inflammation and type 2 diabetes in rat pancreatic islets

Sandovici, I., Hammerle, C. M., Cooper, W. N., Smith, N. H., Tarry-Adkins, J. L., Dunmore, B. J., Bauer, J., Andrews, S. R., Yeo, G. S. H., Ozanne, S. E., et al. (2016) · Diabetologia

Pancreatic function and diabetesDiabetes and associated disorders

Cited by 31

Nucleosomal asymmetry shapes histone mark binding and promotes poising at bivalent domains

Bryan, E., Valsakumar, D., Idigo, N. J., Warburton, M., Webb, K. M., McLaughlin, K. A., Spanos, C., Lenci, S., Major, V., Ambrosi, C., et al. (2025) · Molecular Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 16