Alon, Uri

Network motifs: simple building blocks of complex networks.

Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D., & Alon, U. (2002) · Science

Complex Network Analysis TechniquesBioinformatics and Genomic Networks

Cited by 7,368

Network motifs: theory and experimental approaches

Alon, U. (2007) · Nature Reviews Genetics

Gene Regulatory Network AnalysisGenomics and Chromatin Dynamics

Cited by 3,279

An Introduction to Systems Biology: Design Principles of Biological Circuits

Alon, U. (2006) · Chapman & Hall/CRC eBooks

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 2,825

Structure and function of the feed-forward loop network motif

Mangan, S., & Alon, U. (2003) · Proceedings of the National Academy of Sciences

Gene Regulatory Network AnalysisGenomics and Chromatin Dynamics

Cited by 1,827

Gene Regulation at the Single-Cell Level

Rosenfeld, N., Young, J. W., Alon, U., Swain, P. S., & Elowitz, M. B. (2005) · Science

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 1,104

An Introduction to Systems Biology: Design Principles of Biological Circuits

Alon, U. (2019) · Chapman & Hall/CRC eBooks

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 955

Optimality and evolutionary tuning of the expression level of a protein

Dekel, E., & Alon, U. (2005) · Nature

Evolution and Genetic DynamicsGene Regulatory Network Analysis

Cited by 766

Biological networks: the tinkerer as an engineer

Alon, U. (2003) · Science

Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction

Cited by 706

Evolutionary Trade-Offs, Pareto Optimality, and the Geometry of Phenotype Space

Shoval, O., Sheftel, H., Shinar, G., Hart, Y., Ramote, O., Mayo, A., Dekel, E., Kavanagh, K., & Alon, U. (2012) · Science

Evolution and Genetic DynamicsMorphological variations and asymmetry

Cited by 647

Circuit Design Features of a Stable Two-Cell System

Zhou, X., Franklin, R. A., Adler, M., Jacox, J. B., Bailis, W., Shyer, J. A., Flavell, R. A., Mayo, A., Alon, U., & Medzhitov, R. (2018) · Cell

Gene Regulatory Network AnalysisMathematical Biology Tumor Growth

Cited by 430

The Incoherent Feedforward Loop Can Provide Fold-Change Detection in Gene Regulation

Goentoro, L., Shoval, O., Kirschner, M. W., & Alon, U. (2009) · Molecular Cell

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 424

A cellular and regulatory map of the cholinergic nervous system of C. elegans

Pereira, L., Kratsios, P., Serrano-Saiz, E., Sheftel, H., Mayo, A. E., Hall, D. H., White, J. G., LeBoeuf, B., Garcia, L. R., Alon, U., et al. (2015) · eLife

Neurobiology and Insect Physiology ResearchNeuroscience and Neuropharmacology Research

Cited by 365

On the uniform generation of random graphs with prescribed degree sequences

Milo, R., Kashtan, N., Itzkovitz, S., Newman, M. E. J., & Alon, U. (2003) · arXiv

Complex Network Analysis TechniquesGraph Theory and Algorithms

Cited by 281

A new model for the HPA axis explains dysregulation of stress hormones on the timescale of weeks

Karin, O., Raz, M., Tendler, A., Bar, A., Korem Kohanim, Y., Milo, T., & Alon, U. (2020) · Molecular Systems Biology

Stress Responses and CortisolAdrenal Hormones and Disorders

Cited by 200

Central dogma rates and the trade-off between precision and economy in gene expression

Hausser, J., Mayo, A., Keren, L., & Alon, U. (2019) · Nature Communications

Gene Regulatory Network AnalysisRNA and protein synthesis mechanisms

Cited by 188

The Utility of Paradoxical Components in Biological Circuits

Hart, Y., & Alon, U. (2013) · Molecular Cell

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 151

Response Delays and the Structure of Transcription Networks

Rosenfeld, N., & Alon, U. (2003) · Journal of Molecular Biology

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 148

Invariant Distribution of Promoter Activities in Escherichia coli

Zaslaver, A., Kaplan, S., Bren, A., Jinich, A., Mayo, A., Dekel, E., Alon, U., & Itzkovitz, S. (2009) · PLoS Computational Biology

Gene Regulatory Network AnalysisBacterial Genetics and Biotechnology

Cited by 92

Geometry of the Gene Expression Space of Individual Cells

Korem, Y., Szekely, P., Hart, Y., Sheftel, H., Hausser, J., Mayo, A., Rothenberg, M. E., Kalisky, T., & Alon, U. (2015) · PLOS Computational Biology

Single-cell and spatial transcriptomicsGene Regulatory Network Analysis

Cited by 85

Neural reverse engineering of stripped binaries using augmented control flow graphs

David, Y., Alon, U., & Yahav, E. (2020) · Proceedings of the ACM on Programming Languages

Software Engineering ResearchSecurity and Verification in Computing

Cited by 84

The geometry of the Pareto front in biological phenotype space

Sheftel, H., Shoval, O., Mayo, A., & Alon, U. (2013) · Ecology and Evolution

Evolution and Genetic DynamicsAnimal Behavior and Reproduction

Cited by 79

Neuro-Symbolic Language Modeling with Automaton-augmented Retrieval

Alon, U., Xu, F. F., He, J., Sengupta, S., Roth, D., & Neubig, G. (2022) · arXiv

Topic ModelingNatural Language Processing Techniques

Cited by 32