Gilad, Yoav

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

Marioni, J. C., Mason, C. E., Mane, S. M., Stephens, M., & Gilad, Y. (2008) · Genome Research

Genomics and Phylogenetic StudiesGene expression and cancer classification

Cited by 2,771

Understanding mechanisms underlying human gene expression variation with RNA sequencing

Pickrell, J. K., Marioni, J. C., Pai, A. A., Degner, J. F., Engelhardt, B. E., Nkadori, E., Veyrieras, J.-B., Stephens, M., Gilad, Y., & Pritchard, J. K. (2010) · Nature

Genetic Associations and EpidemiologyRNA Research and Splicing

Cited by 1,256

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Bell, J. T., Pai, A. A., Pickrell, J. K., Gaffney, D. J., Pique-Regi, R., Degner, J. F., Gilad, Y., & Pritchard, J. K. (2011) · Genome Biology

Epigenetics and DNA MethylationGenetic Associations and Epidemiology

Cited by 838

Sex-specific genetic architecture of human disease

Ober, C., Loisel, D. A., & Gilad, Y. (2008) · Nature Reviews Genetics

Sex and Gender in HealthcareGenetic Associations and Epidemiology

Cited by 787

RNA splicing is a primary link between genetic variation and disease

Li, Y. I., van de Geijn, B., Raj, A., Knowles, D. A., Petti, A. A., Golan, D., Gilad, Y., & Pritchard, J. K. (2016) · Science

RNA Research and SplicingGenetic Associations and Epidemiology

Cited by 660

WASP: allele-specific software for robust molecular quantitative trait locus discovery

van de Geijn, B., McVicker, G., Gilad, Y., & Pritchard, J. K. (2015) · Nature Methods

Genomics and Phylogenetic StudiesGenetic Mapping and Diversity in Plants and Animals

Cited by 575

High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation

Veyrieras, J.-B., Kudaravalli, S., Kim, S. Y., Dermitzakis, E. T., Gilad, Y., Stephens, M., & Pritchard, J. K. (2008) · PLoS Genetics

Genetic Associations and EpidemiologyGenetic Mapping and Diversity in Plants and Animals

Cited by 536

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Pique-Regi, R., Degner, J. F., Pai, A. A., Gaffney, D. J., Gilad, Y., & Pritchard, J. K. (2011) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 521

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.

Degner, J. F., Marioni, J. C., Pai, A. A., Pickrell, J. K., Nkadori, E., Gilad, Y., & Pritchard, J. K. (2009) · Bioinformatics

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 502

Comparative studies of gene expression and the evolution of gene regulation

Romero, I. G., Ruvinsky, I., & Gilad, Y. (2012) · Nature Reviews Genetics

Chromosomal and Genetic VariationsEvolution and Genetic Dynamics

Cited by 488

Impact of regulatory variation from RNA to protein

Battle, A., Khan, Z., Wang, S. H., Mitrano, A., Ford, M. J., Pritchard, J. K., & Gilad, Y. (2015) · Science

Genetic Associations and EpidemiologyGenetic Mapping and Diversity in Plants and Animals

Cited by 471

Identification of Genetic Variants That Affect Histone Modifications in Human Cells

McVicker, G., van de Geijn, B., Degner, J. F., Cain, C. E., Banovich, N. E., Raj, A., Lewellen, N., Myrthil, M., Gilad, Y., & Pritchard, J. K. (2013) · Science

Genomics and Chromatin DynamicsGenetic Associations and Epidemiology

Cited by 436

Batch effects and the effective design of single-cell gene expression studies

Tung, P.-Y., Blischak, J. D., Hsiao, C. J., Knowles, D. A., Burnett, J. E., Pritchard, J. K., & Gilad, Y. (2017) · Scientific Reports

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 356

Seasonal Variation in Human Gut Microbiome Composition

Davenport, E. R., Mizrahi-Man, O., Michelini, K., Barreiro, L. B., Ober, C., & Gilad, Y. (2014) · PLoS ONE

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 314

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

Pickrell, J. K., Pai, A. A., Gilad, Y., & Pritchard, J. K. (2010) · PLoS Genetics

RNA Research and SplicingGenomics and Phylogenetic Studies

Cited by 311

Where Are the Disease-Associated eQTLs?

Umans, B. D., Battle, A., & Gilad, Y. (2021) · Trends in Genetics

Genetic Associations and EpidemiologyGenomics and Chromatin Dynamics

Cited by 296

Social environment is associated with gene regulatory variation in the rhesus macaque immune system

Tung, J., Barreiro, L. B., Johnson, Z. P., Hansen, K. D., Michopoulos, V., Toufexis, D., Michelini, K., Wilson, M. E., & Gilad, Y. (2012) · Proceedings of the National Academy of Sciences

Stress Responses and CortisolAnimal Behavior and Reproduction

Cited by 277

Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures

Khan, Z., Ford, M. J., Cusanovich, D. A., Mitrano, A., Pritchard, J. K., & Gilad, Y. (2013) · Science

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 240

Dynamic genetic regulation of gene expression during cellular differentiation

Strober, B. J., Elorbany, R., Rhodes, K., Krishnan, N., Tayeb, K., Battle, A., & Gilad, Y. (2019) · Science

Genetic Associations and EpidemiologyGenomics and Chromatin Dynamics

Cited by 219

DNA methylation in lung cells is associated with asthma endotypes and genetic risk

Nicodemus-Johnson, J., Myers, R. A., Sakabe, N. J., Sobreira, D. R., Hogarth, D. K., Naureckas, E. T., Sperling, A. I., Solway, J., White, S. R., Nobrega, M. A., et al. (2016) · JCI Insight

Asthma and respiratory diseasesEpigenetics and DNA Methylation

Cited by 180

Comment on “Widespread RNA and DNA Sequence Differences in the Human Transcriptome”

Pickrell, J. K., Gilad, Y., & Pritchard, J. K. (2012) · Science

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 167

The effects of EBV transformation on gene expression levels and methylation profiles

Çalışkan, M., Cusanovich, D. A., Ober, C., & Gilad, Y. (2011) · Human Molecular Genetics

Epigenetics and DNA MethylationGenomics and Chromatin Dynamics

Cited by 134

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

Selewa, A., Dohn, R., Eckart, H., Lozano, S., Xie, B., Gauchat, E., Elorbany, R., Rhodes, K., Burnett, J., Gilad, Y., et al. (2020) · Scientific Reports

Single-cell and spatial transcriptomicsGenomics and Phylogenetic Studies

Cited by 102

A reanalysis of mouse ENCODE comparative gene expression data

Gilad, Y., & Mizrahi-Man, O. (2015) · F1000Research

Gene expression and cancer classificationGenomics and Phylogenetic Studies

Cited by 100