Underwood, Jason G.

Massively parallel digital transcriptional profiling of single cells

Zheng, G. X. Y., Terry, J. M., Belgrader, P., Ryvkin, P., Bent, Z. W., Wilson, R., Ziraldo, S. B., Wheeler, T. D., McDermott, G. P., Zhu, J., et al. (2017) · Nature Communications

Single-cell and spatial transcriptomicsInnovative Microfluidic and Catalytic Techniques Innovation

Cited by 7,353

High-resolution comparative analysis of great ape genomes

Kronenberg, Z. N., Fiddes, I. T., Gordon, D., Murali, S., Cantsilieris, S., Meyerson, O. S., Underwood, J. G., Nelson, B. J., Chaisson, M. J. P., Dougherty, M. L., et al. (2018) · Science

Genomics and Phylogenetic StudiesGenomic variations and chromosomal abnormalities

Cited by 350

Characterization of the human ESC transcriptome by hybrid sequencing

Au, K. F., Sebastiano, V., Afshar, P. T., Durruthy, J. D., Lee, L., Williams, B. A., van Bakel, H., Schadt, E. E., Reijo-Pera, R. A., Underwood, J. G., et al. (2013) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 341

Improving PacBio Long Read Accuracy by Short Read Alignment

Au, K. F., Underwood, J. G., Lee, L., & Wong, W. H. (2012) · PLoS ONE

Genomics and Phylogenetic StudiesAlgorithms and Data Compression

Cited by 335

Homologues of the Caenorhabditis elegans Fox-1 Protein Are Neuronal Splicing Regulators in Mammals

Underwood, J. G., Boutz, P. L., Dougherty, J. D., Stoilov, P., & Black, D. L. (2005) · Molecular and Cellular Biology

RNA Research and SplicingRNA regulation and disease

Cited by 272

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1

Auweter, S. D., Fasan, R., Reymond, L., Underwood, J. G., Black, D. L., Pitsch, S., & Allain, F. H. (2006) · The EMBO Journal

RNA Research and SplicingRNA and protein synthesis mechanisms

Cited by 264

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study

Li, S., Tighe, S. W., Nicolet, C. M., Grove, D., Levy, S., Farmerie, W., Viale, A., Wright, C., Schweitzer, P. A., Gao, Y., et al. (2014) · Nature Biotechnology

Genomics and Phylogenetic StudiesSingle-cell and spatial transcriptomics

Cited by 240

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing

Weirather, J. L., Afshar, P. T., Clark, T. A., Tseng, E., Powers, L. S., Underwood, J. G., Zabner, J., Korlach, J., Wong, W. H., & Au, K. F. (2015) · Nucleic Acids Research

Genomics and Phylogenetic StudiesCancer Genomics and Diagnostics

Cited by 123

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

Fiddes, I. T., Armstrong, J., Diekhans, M., Nachtweide, S., Kronenberg, Z. N., Underwood, J. G., Gordon, D., Earl, D., Keane, T., Eichler, E. E., et al. (2018) · Genome Research

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 120