Makarova, Kira S.

In vivo genome editing using Staphylococcus aureus Cas9

Ran, F. A., Cong, L., Yan, W. X., Scott, D. A., Gootenberg, J. S., Kriz, A. J., Zetsche, B., Shalem, O., Wu, X., Makarova, K. S., et al. (2015) · Nature

CRISPR and Genetic EngineeringVirus-based gene therapy research

Cited by 2,687

Diversity, classification and evolution of CRISPR-Cas systems

Koonin, E. V., Makarova, K. S., & Zhang, F. (2017) · Current Opinion in Microbiology

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 1,423

Comparative genomics of the lactic acid bacteria.

Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., et al. (2006) · Proceedings of the National Academy of Sciences

Probiotics and Fermented FoodsGenomics and Phylogenetic Studies

Cited by 1,391

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

Makarova, K. S., Grishin, N. V., Shabalina, S. A., Wolf, Y. I., & Koonin, E. V. (2006) · Biology Direct

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 1,199

Horizontal gene transfer in prokaryotes: Quantification and classification

Koonin, E. V., Makarova, K. S., & Aravind, L. (2001) · Annual Review of Microbiology

Genomics and Phylogenetic StudiesBacterial Genetics and Biotechnology

Cited by 1,126

Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28

Smargon, A. A., Cox, D. B. T., Pyzocha, N. K., Zheng, K., Slaymaker, I. M., Gootenberg, J. S., Abudayyeh, O. A., Essletzbichler, P., Shmakov, S., Makarova, K. S., et al. (2017) · Molecular Cell

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 575

Classification and evolution of type II CRISPR-Cas systems

Chylinski, K., Makarova, K. S., Charpentier, E., & Koonin, E. V. (2014) · Nucleic Acids Research

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 498

Origins and evolution of CRISPR-Cas systems

Koonin, E. V., & Makarova, K. S. (2019) · Philosophical Transactions of the Royal Society B: Biological Sciences

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 494

The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases

Altae-Tran, H., Kannan, S., Demircioglu, F. E., Oshiro, R., Nety, S. P., McKay, L. J., Dlakić, M., Inskeep, W. P., Makarova, K. S., Macrae, R. K., et al. (2021) · Science

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 407

A korarchaeal genome reveals insights into the evolution of the Archaea

Elkins, J. G., Podar, M., Graham, D. E., Makarova, K. S., Wolf, Y., Randau, L., Hedlund, B. P., Brochier-Armanet, C., Kunin, V., Anderson, I., et al. (2008) · Proceedings of the National Academy of Sciences

Genomics and Phylogenetic StudiesMicrobial Community Ecology and Physiology

Cited by 296

Programmable RNA targeting with the single-protein CRISPR effector Cas7-11

Özcan, A., Krajeski, R., Ioannidi, E., Lee, B., Gardner, A., Makarova, K. S., Koonin, E. V., Abudayyeh, O. O., & Gootenberg, J. S. (2021) · Nature

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 263

Evolution of diverse cell division and vesicle formation systems in Archaea

Makarova, K. S., Yutin, N., Bell, S. D., & Koonin, E. V. (2010) · Nature Reviews Microbiology

Bacterial Genetics and BiotechnologyCellular transport and secretion

Cited by 228

Inventing the dynamo machine: the evolution of the F-type and V-type ATPases

Mulkidjanian, A. Y., Makarova, K. S., Galperin, M. Y., & Koonin, E. V. (2007) · Nature Reviews Microbiology

ATP Synthase and ATPases ResearchRNA and protein synthesis mechanisms

Cited by 210

Compact RNA editors with small Cas13 proteins

Kannan, S., Altae-Tran, H., Jin, X., Madigan, V. J., Oshiro, R., Makarova, K. S., Koonin, E. V., & Zhang, F. (2022) · Nature Biotechnology

CRISPR and Genetic EngineeringRNA regulation and disease

Cited by 176

Evolutionary primacy of sodium bioenergetics

Mulkidjanian, A. Y., Galperin, M. Y., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2008) · Biology Direct

ATP Synthase and ATPases ResearchIon Transport and Channel Regulation

Cited by 163

Archaeology of Eukaryotic DNA Replication

Makarova, K. S., & Koonin, E. V. (2013) · Cold Spring Harbor Perspectives in Biology

DNA Repair MechanismsGenomics and Chromatin Dynamics

Cited by 87

On the origin of reverse transcriptase-using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires

Silas, S., Makarova, K. S., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S., Krishnamurthy, S. R., Fu, B. X. H., et al. (2017) · mBio

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 62

Structure and function of virion RNA polymerase of a crAss-like phage

Drobysheva, A. V., Panafidina, S. A., Kolesnik, M. V., Klimuk, E. I., Minakhin, L., Yakunina, M. V., Borukhov, S., Nilsson, E., Holmfeldt, K., Yutin, N., et al. (2021) · Nature

Bacteriophages and microbial interactionsEnzyme Structure and Function

Cited by 44

Diversity, Origin and Evolution of the ESCRT Systems

Makarova, K. S., Tobiasson, V., Wolf, Y. I., Lu, Z., Liu, Y., Zhang, S., Krupovic, M., Li, M., & Koonin, E. V. (2024) · mBio

Cellular transport and secretionUbiquitin and proteasome pathways

Cited by 36

Diversity, origin, and evolution of the ESCRT systems

Makarova, K. S., Tobiasson, V., Wolf, Y. I., Lu, Z., Liu, Y., Zhang, S., Krupovic, M., Li, M., & Koonin, E. V. (2024) · mBio

Cellular transport and secretionUbiquitin and proteasome pathways

Cited by 36

Regulatory sequence-based discovery of anti-defense genes in archaeal viruses

Peng, X., Bhoobalan-Chitty, Y., Xu, S., Alvarez, L. M., Karamycheva, S., Makarova, K., & Koonin, E. (2023) · Nature Communications

CRISPR and Genetic EngineeringBacteriophages and microbial interactions

Cited by 14

CoCoNuTs are a diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2024) · eLife

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 3

CoCoNuTs: A diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2023) · bioRxiv (Cold Spring Harbor Laboratory)

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 1

CoCoNuTs: A diverse subclass of Type IV restriction systems predicted to target RNA

Bell, R. T., Sahakyan, H., Makarova, K. S., Wolf, Y. I., & Koonin, E. V. (2024) · eLife

CRISPR and Genetic EngineeringBacterial Genetics and Biotechnology

Cited by 0