Lewis, James D.

Linking long-term dietary patterns with gut microbial enterotypes

Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science

Gut microbiota and healthNutritional Studies and Diet

Cited by 6,513

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine

Gut microbiota and healthNutritional Studies and Diet

Cited by 4,386

Enterotypes in the landscape of gut microbial community composition

Costea, P. I., Hildebrand, F., Arumugam, M., Bäckhed, F., Blaser, M. J., Bushman, F. D., de Vos, W. M., Ehrlich, S. D., Fraser, C. M., Hattori, M., et al. (2017) · Nature Microbiology

Gut microbiota and healthMicrobial Community Ecology and Physiology

Cited by 1,138

The human gut virome: inter-individual variation and dynamic response to diet

Minot, S., Sinha, R., Chen, J., Li, H., Keilbaugh, S. A., Wu, G. D., Lewis, J. D., & Bushman, F. D. (2011) · Genome Research

Bacteriophages and microbial interactionsGut microbiota and health

Cited by 935

Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota

Albenberg, L., Esipova, T. V., Judge, C. P., Bittinger, K., Chen, J., Laughlin, A., Grunberg, S., Baldassano, R. N., Lewis, J. D., Li, H., et al. (2014) · Gastroenterology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 886

Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn's disease

Lewis, J. D., Chen, E. Z., Baldassano, R. N., Otley, A. R., Griffiths, A. M., Lee, D., Bittinger, K., Bailey, A., Friedman, E. S., Hoffmann, C., et al. (2015) · Cell Host & Microbe

Gut microbiota and healthInflammatory Bowel Disease

Cited by 823

Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents

Hoffmann, C., Dollive, S., Grunberg, S., Chen, J., Li, H., Wu, G. D., Lewis, J. D., & Bushman, F. D. (2013) · PLoS ONE

Gut microbiota and healthGastrointestinal motility and disorders

Cited by 808

Corticosteroids, But Not TNF Antagonists, Are Associated With Adverse COVID-19 Outcomes in Patients With Inflammatory Bowel Diseases: Results From an International Registry

Brenner, E. J., Ungaro, R. C., Gearry, R. B., Kaplan, G. G., Kissous-Hunt, M., Lewis, J. D., Ng, S. C., Rahier, J.-F., Reinisch, W., Ruemmele, F. M., et al. (2020) · Gastroenterology

COVID-19 Clinical Research StudiesInflammatory Bowel Disease

Cited by 674

Risk of Bladder Cancer Among Diabetic Patients Treated With Pioglitazone

Lewis, J. D., Ferrara, A., Peng, T., Hedderson, M., Bilker, W. B., Quesenberry, C. P., Vaughn, D. J., Nessel, L., Selby, J., & Strom, B. L. (2011) · Diabetes Care

Metabolism, Diabetes, and CancerBladder and Urothelial Cancer Treatments

Cited by 625

Validation studies of the health improvement network (THIN) database for pharmacoepidemiology research

Lewis, J. D., Schinnar, R., Bilker, W. B., Wang, X., & Strom, B. L. (2007) · Pharmacoepidemiology and Drug Safety

Medical Coding and Health InformationElectronic Health Records Systems

Cited by 602

Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production

Wu, G. D., Compher, C., Chen, E. Z., Smith, S. A., Shah, R. D., Bittinger, K., Chehoud, C., Albenberg, L. G., Nessel, L., Gilroy, E., et al. (2016) · Gut

Gut microbiota and healthNutritional Studies and Diet

Cited by 512

Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome

Chassaing, B., Compher, C., Bonhomme, B., Liu, Q., Tian, Y., Walters, W., Nessel, L., Delaroque, C., Hao, F., Gershuni, V., et al. (2022) · Gastroenterology

Gut microbiota and healthGastrointestinal motility and disorders

Cited by 347

Efficacy and Safety of Upadacitinib in a Randomized Trial of Patients With Crohn’s Disease

Sandborn, W. J., Feagan, B. G., Loftus, E. V., Peyrin-Biroulet, L., Van Assche, G., D’Haens, G., Schreiber, S., Colombel, J.-F., Lewis, J. D., Ghosh, S., et al. (2020) · Gastroenterology

Inflammatory Bowel DiseaseRheumatoid Arthritis Research and Therapies

Cited by 322

Pioglitazone Use and Risk of Bladder Cancer and Other Common Cancers in Persons With Diabetes

Lewis, J. D., Habel, L. A., Quesenberry, C. P., Strom, B. L., Peng, T., Hedderson, M. M., Ehrlich, S. F., Mamtani, R., Bilker, W., Vaughn, D. J., et al. (2015) · JAMA

Metabolism, Diabetes, and CancerCancer Risks and Factors

Cited by 320

Dietary guidance from the international organization for the study of inflammatory bowel diseases

Levine, A., Rhodes, J. M., Lindsay, J. O., Abreu, M. T., Kamm, M. A., Gibson, P. R., Gasche, C., Silverberg, M. S., Mahadevan, U., Boneh, R. S., et al. (2020) · Clinical Gastroenterology and Hepatology

Inflammatory Bowel DiseaseNutritional Studies and Diet

Cited by 297

A meta-analysis of the placebo rates of remission and response in clinical trials of active crohn’s disease

Su, C., Lichtenstein, G. R., Krok, K., Brensinger, C. M., & Lewis, J. D. (2004) · Gastroenterology

Inflammatory Bowel DiseaseStatistical Methods in Clinical Trials

Cited by 212

The impact of bariatric surgery on menstrual patterns

Teitelman, M., Grotegut, C., Williams, N., & Lewis, J. (2006) · Obesity Surgery

Bariatric Surgery and OutcomesOvarian function and disorders

Cited by 179

Evaluation of the Patient-Reported Outcomes Measurement Information System in a Large Cohort of Patients With Inflammatory Bowel Diseases

Kappelman, M. D., Long, M. D., Martin, C., DeWalt, D. A., Kinneer, P. M., Chen, W., Lewis, J. D., & Sandler, R. S. (2014) · Clinical Gastroenterology and Hepatology

Inflammatory Bowel DiseaseHealth Systems, Economic Evaluations, Quality of Life

Cited by 178

Potential association between the oral tetracycline class of antimicrobials used to treat acne and inflammatory bowel disease

Margolis, D. J., Fanelli, M., Hoffstad, O., & Lewis, J. D. (2010) · American Journal of Gastroenterology

Acne and Rosacea Treatments and EffectsInflammatory Bowel Disease

Cited by 177

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

Dollive, S., Peterfreund, G. L., Sherrill-Mix, S., Bittinger, K., Sinha, R., Hoffmann, C., Nabel, C. S., Hill, D. A., Artis, D., Bachman, M. A., et al. (2012) · Genome biology

Genomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity Studies

Cited by 147

Risk factors for early primary graft dysfunction after lung transplantation: a registry study

Kuntz, C. L., Hadjiliadis, D., Ahya, V. N., Kotloff, R. M., Pochettino, A., Lewis, J., & Christie, J. D. (2009) · Clinical Transplantation

Transplantation: Methods and OutcomesOrgan Transplantation Techniques and Outcomes

Cited by 138

Chronic Proton Pump Inhibitor Therapy and the Risk of Colorectal Cancer

Yang, Y., Hennessy, S., Propert, K., Hwang, W., Sedarat, A., & Lewis, J. D. (2007) · Gastroenterology

Inflammatory mediators and NSAID effectsColorectal Cancer Screening and Detection

Cited by 125

Analysis of the Human Gut Microbiome and Association With Disease

Wu, G. D., & Lewis, J. D. (2013) · Clinical Gastroenterology and Hepatology

Gut microbiota and healthOral microbiology and periodontitis research

Cited by 113

Cardiovascular Risk in Rheumatoid Arthritis: Comparing TNF-α Blockade with Nonbiologic DMARDs

Solomon, D. H., Curtis, J. R., Saag, K. G., Lii, J., Chen, L., Harrold, L. R., Herrinton, L. J., Graham, D. J., Kowal, M. K., Kuriya, B., et al. (2013) · The American Journal of Medicine

Rheumatoid Arthritis Research and TherapiesAutoimmune and Inflammatory Disorders Research

Cited by 111