Gabitto, Mariano I.

A Python library for probabilistic analysis of single-cell omics data

Gayoso, A., Lopez, R., Xing, G., Boyeau, P., Valiollah Pour Amiri, V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al. (2022) · Nature Biotechnology

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 789

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice

Komiyama, T., Sato, T. R., O’Connor, D. H., Zhang, Y.-X., Huber, D., Hooks, B. M., Gabitto, M., & Svoboda, K. (2010) · Nature

Neural dynamics and brain functionNeuroscience and Neuropharmacology Research

Cited by 447

Integrated multimodal cell atlas of Alzheimer’s disease

Gabitto, M. I., Travaglini, K. J., Rachleff, V. M., Kaplan, E. S., Long, B., Ariza, J., Ding, Y., Mahoney, J. T., Dee, N., Goldy, J., et al. (2023) · Nature Neuroscience

Alzheimer's disease research and treatmentsSingle-cell and spatial transcriptomics

Cited by 425

Integrated multimodal cell atlas of Alzheimer’s disease

Gabitto, M. I., Travaglini, K. J., Rachleff, V. M., Kaplan, E. S., Long, B., Ariza, J., Ding, Y., Mahoney, J. T., Dee, N., Goldy, J., et al. (2024) · Nature Neuroscience

Alzheimer's disease research and treatmentsSingle-cell and spatial transcriptomics

Cited by 397

MultiVI: deep generative model for the integration of multi-modal data

Ashuach, T., Gabitto, M. I., Jordan, M. I., & Yosef, N. (2021) · Nature Methods

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 385

A Gustotopic Map of Taste Qualities in the Mammalian Brain

Chen, X., Gabitto, M., Peng, Y., Ryba, N. J. P., & Zuker, C. S. (2011) · Science

Biochemical Analysis and Sensing TechniquesOlfactory and Sensory Function Studies

Cited by 379

Spinal inhibitory interneuron diversity delineates variant motor microcircuits

Bikoff, J. B., Gabitto, M. I., Rivard, A. F., Drobac, E., Machado, T. A., Miri, A., Brenner-Morton, S., Famojure, E., Diaz, C., Alvarez, F. J., et al. (2016) · Cell

Neuroscience and Neuropharmacology ResearchDevelopmental Biology and Gene Regulation

Cited by 262

Origin and segmental diversity of spinal inhibitory interneurons

Sweeney, L. B., Bikoff, J. B., Gabitto, M. I., Brenner-Morton, S., Baek, M., Yang, J. H., Tabak, E. G., Dasen, J. S., Kintner, C. R., & Jessell, T. M. (2018) · Neuron

Developmental Biology and Gene RegulationNeurogenesis and neuroplasticity mechanisms

Cited by 116

CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories

Villa, C. E., Cheroni, C., Dotter, C. P., López-Tóbon, A., Oliveira, B., Sacco, R., Yahya, A. Ç., Morandell, J., Gabriele, M., Tavakoli, M. R., et al. (2022) · Cell Reports

Genetics and Neurodevelopmental DisordersAutism Spectrum Disorder Research

Cited by 92

Bayesian sparse regression analysis documents the diversity of spinal inhibitory interneurons

Gabitto, M. I., Pakman, A., Bikoff, J. B., Abbott, L. F., Jessell, T. M., & Paninski, L. (2016) · Cell

Single-cell and spatial transcriptomicsCell Image Analysis Techniques

Cited by 73

SEA-AD is a multimodal cellular atlas and resource for Alzheimer’s disease

Hawrylycz, M., Kaplan, E. S., Travaglini, K. J., Gabitto, M. I., Miller, J. A., Ng, L., Close, J. L., Hodge, R. D., Long, B., Mollenkopf, T., et al. (2024) · Nature Aging

Alzheimer's disease research and treatmentsSingle-cell and spatial transcriptomics

Cited by 47

Somatic cancer driver mutations are enriched and associated with inflammatory states in Alzheimer’s disease microglia

Huang, A. Y., Zhou, Z., Talukdar, M., Miller, M. B., Chhouk, B., Enyenihi, L., Rosen, I., Stronge, E., Zhao, B., Kim, D., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory)

Alzheimer's disease research and treatmentsNeuroinflammation and Neurodegeneration Mechanisms

Cited by 16

Somatic cancer variants enriched in Alzheimer’s disease microglia-like cells drive inflammatory and proliferative states

Huang, A. Y., Zhou, Z., Talukdar, M., Enyenihi, L., Miller, M. B., Chhouk, B., Rosen, I., Zheng, M., Zhou, M., Yang, A., et al. (2026) · Cell

Neuroinflammation and Neurodegeneration MechanismsAlzheimer's disease research and treatments

Cited by 15