Karaca, Ezgi

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

van Zundert, G. C. P., Rodrigues, J. P. G. L. M., Trellet, M., Schmitz, C., Kastritis, P. L., Karaca, E., Melquiond, A. S. J., van Dijk, M., de Vries, S. J., & Bonvin, A. M. J. J. (2016) · Journal of Molecular Biology

Protein Structure and DynamicsComputational Drug Discovery Methods

Cited by 2,785

The impact of AI ‐based modeling on the accuracy of protein assembly prediction: Insights from CASP15

Ozden, B., Kryshtafovych, A., & Karaca, E. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 51

Assessment of the CASP14 assembly predictions

Ozden, B., Kryshtafovych, A., & Karaca, E. (2021) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 41

Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15

Kryshtafovych, A., Montelione, G. T., Rigden, D. J., Mesdaghi, S., Karaca, E., & Moult, J. (2023) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 31

Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15

Kryshtafovych, A., Montelione, G., Rigden, D., Mesdaghi, S., Karaca, E., & Moult, J. (2023) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 31

An NADH-controlled gatekeeper of ATP synthase

Schildhauer, F., Ryl, P. S. J., Lauer, S. M., Lenz, S., Barlas, A. B., Ouzounidis, V. R., Jeffrey, K., Marcu, D.-C., O’Reilly, F. J., Graziadei, A., et al. (2025) · Molecular Cell

Mitochondrial Function and PathologyATP Synthase and ATPases Research

Cited by 11

Exploring the Potential of AlphaFold Distograms for Predicting Binding-induced Hinge Motions

Savaş, B., Barlas, A. B., & Karaca, E. (2025) · FEBS Letters

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 5

E2-Regulated Transcriptome Complexity Revealed by Long-Read Direct RNA Sequencing: From Isoform Discovery to Truncated Proteins

Dioken, D. N., Ozgul, I., Yilmazbilek, I., Almeric, E., Eroglu, I. C., Cicek, M., Yilmaz, U. C., Karagozoglu, D., Cicek, E., Karaca, E., et al. (2025) · RNA Biology

RNA Research and SplicingEstrogen and related hormone effects

Cited by 5

Towards a Greener AlphaFold2 Protocol for Antibody–Antigen Modeling: Insights From CAPRI Round 55

Savaş, B., Yılmazbilek, İ., Özsan, A., & Karaca, E. (2026) · Proteins: Structure, Function, and Bioinformatics

Protein Structure and Dynamicsvaccines and immunoinformatics approaches

Cited by 4

Towards a greener AlphaFold2 protocol for antibody-antigen modeling: Insights from CAPRI Round 55

Savaş, B., Yılmazbilek, İ., Özsan, A., & Karaca, E. (2024) · Proteins Structure Function and Bioinformatics

Protein Structure and Dynamicsvaccines and immunoinformatics approaches

Cited by 4