Aebersold, Ruedi

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle

Mosadeghi, R., Reichermeier, K. M., Winkler, M., Schreiber, A., Reitsma, J. M., Zhang, Y., Stengel, F., Cao, J., Kim, M., Sweredoski, M. J., et al. (2016) · eLife

Ubiquitin and proteasome pathwaysProtein Degradation and Inhibitors

Cited by 95

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry

Bouchal, P., Schubert, O. T., Faktor, J., Capkova, L., Imrichova, H., Zoufalova, K., Paralova, V., Hrstka, R., Liu, Y., Ebhardt, H. A., et al. (2019) · Cell Reports

Advanced Proteomics Techniques and ApplicationsBreast Cancer Treatment Studies

Cited by 94

Systematic detection of functional proteoform groups from bottom-up proteomic datasets

Bludau, I., Frank, M., Dörig, C., Cai, Y., Heusel, M., Rosenberger, G., Picotti, P., Collins, B. C., Röst, H., & Aebersold, R. (2021) · Nature Communications

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 88

Systematic detection of functional proteoform groups from bottom-up proteomic datasets

Bludau, I., Frank, M., Dörig, C., Cai, Y., Heusel, M., Rosenberger, G., Picotti, P., Collins, B. C., Röst, H., & Aebersold, R. (2020) · Nature Communications

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 88

Comprehensive proteomics

Beck, M., Claassen, M., & Aebersold, R. (2011) · Current Opinion in Biotechnology

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 83

Artificial intelligence defines protein-based classification of thyroid nodules

Sun, Y., Selvarajan, S., Zang, Z., Liu, W., Zhu, Y., Zhang, H., Chen, W., Chen, H., Li, L., Cai, X., et al. (2022) · Cell Discovery

Thyroid Cancer Diagnosis and TreatmentAI in cancer detection

Cited by 73

The evolving contribution of mass spectrometry to integrative structural biology

Faini, M., Stengel, F., & Aebersold, R. (2016) · Journal of the American Society for Mass Spectrometry

Mass Spectrometry Techniques and ApplicationsAdvanced Proteomics Techniques and Applications

Cited by 44

Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

Ebhardt, H. A., Sabidó, E., Hüttenhain, R., Collins, B., & Aebersold, R. (2012) · PROTEOMICS

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 38

Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins

Mirzaei, H., Knijnenburg, T. A., Kim, B., Robinson, M., Picotti, P., Carter, G. W., Li, S., Dilworth, D. J., Eng, J. K., Aitchison, J. D., et al. (2013) · Proceedings of the National Academy of Sciences

Advanced Proteomics Techniques and ApplicationsGenomics and Chromatin Dynamics

Cited by 30

Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer

Plattner, C., Lamberti, G., Blattmann, P., Kirchmair, A., Rieder, D., Loncova, Z., Sturm, G., Scheidl, S., Ijsselsteijn, M., Fotakis, G., et al. (2023) · iScience

Advanced Proteomics Techniques and ApplicationsColorectal Cancer Treatments and Studies

Cited by 27

Integrative solution structure of PTBP1-IRES complex reveals strong compaction and ordering with residual conformational flexibility

Dorn, G., Gmeiner, C., de Vries, T., Dedic, E., Novakovic, M., Damberger, F. F., Maris, C., Finol, E., Sarnowski, C. P., Kohlbrecher, J., et al. (2023) · Nature Communications

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 27

Proteome Coverage Prediction for Integrated Proteomics Datasets

Claassen, M., Aebersold, R., & Buhmann, J. M. (2011) · Journal of Computational Biology

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 8