Bouatta, Nazim

Single-sequence protein structure prediction using language models from deep learning

Chowdhury, R., Bouatta, N., Biswas, S., Rochereau, C., Church, G. M., Sorger, P. K., & AlQuraishi, M. (2021) · Nature Biotechnology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 455

Single-sequence protein structure prediction using a language model and deep learning

Chowdhury, R., Bouatta, N., Biswas, S., Floristean, C., Kharkar, A., Roy, K., Rochereau, C., Ahdritz, G., Zhang, J., Church, G. M., et al. (2022) · Nature Biotechnology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 455

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

Ahdritz, G., Bouatta, N., Floristean, C., Kadyan, S., Xia, Q., Gerecke, W., O’Donnell, T. J., Berenberg, D., Fisk, I., Zanichelli, N., et al. (2024) · Nature Methods

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 439

Protein structure prediction by AlphaFold 2: are attention and symmetries all you need?

Bouatta, N., Sorger, P., & AlQuraishi, M. (2021) · Acta Crystallographica Section D Structural Biology

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 69

RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction

Szikszai, M., Magnus, M., Sanghi, S., Kadyan, S., Bouatta, N., & Rivas, E. (2024) · Journal of Molecular Biology

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 38

RNA3DB: A structurally-dissimilar dataset split for training and benchmarking deep learning models for RNA structure prediction

Szikszai, M., Magnus, M., Sanghi, S., Kadyan, S., Bouatta, N., & Rivas, E. (2024) · Journal of Molecular Biology

RNA and protein synthesis mechanismsProtein Structure and Dynamics

Cited by 38