Bulyk, Martha L.

The multiple mechanisms that regulate p53 activity and cell fate

Hafner, A., Bulyk, M. L., Jambhekar, A., & Lahav, G. (2019) · Nature Reviews Molecular Cell Biology

Cancer-related Molecular PathwaysDNA Repair Mechanisms

Cited by 1,129

STAT3 Activation of miR-21 and miR-181b-1 via PTEN and CYLD Are Part of the Epigenetic Switch Linking Inflammation to Cancer

Iliopoulos, D., Jaeger, S. A., Hirsch, H. A., Bulyk, M. L., & Struhl, K. (2010) · Molecular Cell

MicroRNA in disease regulationCytokine Signaling Pathways and Interactions

Cited by 830

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

Berger, M. F., Badis, G., Gehrke, A. R., Talukder, S., Philippakis, A. A., Peña-Castillo, L., Alleyne, T. M., Mnaimneh, S., Botvinnik, O. B., Chan, E. T., et al. (2008) · Cell

Genomics and Chromatin DynamicsProtein Structure and Dynamics

Cited by 606

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

Wei, G., Badis, G., Berger, M. F., Kivioja, T., Palin, K., Enge, M., Bonke, M., Jolma, A., Varjosalo, M., Gehrke, A. R., et al. (2010) · The EMBO Journal

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 568

Direct promoter repression by BCL11A controls the fetal to adult hemoglobin switch

Liu, N., Hargreaves, V. V., Zhu, Q., Kurland, J. V., Hong, J., Kim, W., Sher, F., Macias-Trevino, C., Rogers, J. M., Kurita, R., et al. (2018) · Cell

Hemoglobinopathies and Related DisordersHemoglobin structure and function

Cited by 478

Evaluation of methods for modeling transcription factor sequence specificity

DREAM5 Consortium, Weirauch, M. T., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T. R., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., et al. (2013) · Nature Biotechnology

Genomics and Chromatin DynamicsGenomics and Phylogenetic Studies

Cited by 381

Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts

Gisselbrecht, S. S., Palagi, A., Kurland, J. V., Rogers, J. M., Ozadam, H., Zhan, Y., Dekker, J., & Bulyk, M. L. (2020) · Molecular Cell

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 128

Zinc finger protein SALL4 functions through an AT-rich motif to regulate gene expression

Kong, N. R., Bassal, M. A., Tan, H. K., Kurland, J. V., Yong, K. J., Young, J. J., Yang, Y., Li, F., Lee, J. D., Liu, Y., et al. (2021) · Cell Reports

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 56

A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors

Nishi, Y., Zhang, X., Jeong, J., Peterson, K. A., Vedenko, A., Bulyk, M. L., Hide, W. A., & McMahon, A. P. (2015) · Development

Developmental Biology and Gene RegulationHedgehog Signaling Pathway Studies

Cited by 53

Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms

Lambourne, L., Mattioli, K., Santoso, C., Sheynkman, G., Inukai, S., Kaundal, B., Berenson, A., Spirohn-Fitzgerald, K., Bhattacharjee, A., Rothman, E., et al. (2025) · Molecular Cell

Genomics and Chromatin DynamicsGene Regulatory Network Analysis

Cited by 42

A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites

Datta, R. R., Ling, J., Kurland, J., Ren, X., Xu, Z., Yucel, G., Moore, J., Shokri, L., Baker, I., Bishop, T., et al. (2018) · Genes & Development

Developmental Biology and Gene RegulationGenomics and Chromatin Dynamics

Cited by 30

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

Nelms, B. D., Waldron, L., Barrera, L. A., Weflen, A. W., Goettel, J. A., Guo, G., Montgomery, R. K., Neutra, M. R., Breault, D. T., Snapper, S. B., et al. (2016) · Genome biology

Gene expression and cancer classificationSingle-cell and spatial transcriptomics

Cited by 24

DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues

Kock, K. H., Kimes, P. K., Gisselbrecht, S. S., Inukai, S., Phanor, S. K., Anderson, J. T., Ramakrishnan, G., Lipper, C. H., Song, D., Kurland, J. V., et al. (2024) · Nature Communications

Genomics and Rare DiseasesProtein Structure and Dynamics

Cited by 24