Chakravarty, Devlina

AlphaFold2 fails to predict protein fold switching

Chakravarty, D., & Porter, L. L. (2022) · Protein Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 193

AlphaFold2 fails to predict protein fold switching

Chakravarty, D., & Porter, L. L. (2022) · Protein Science

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 193

AlphaFold2 has more to learn about protein energy landscapes

Chakravarty, D., Schafer, J. W., Chen, E. A., Thole, J. R., & Porter, L. L. (2023) · Nature Communications

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 159

AlphaFold predictions of fold-switched conformations are driven by structure memorization

Chakravarty, D., Schafer, J. W., Chen, E. A., Thole, J. F., Ronish, L. A., Lee, M., & Porter, L. L. (2024) · Nature Communications

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 159

Blind prediction of homo- and hetero-protein complexes: the CASP13-CAPRI experiment

Lensink, M. F., Brysbaert, G., Nadzirin, N., Velankar, S., Chaleil, R. A. G., Gerguri, T., Bates, P. A., Laine, E., Carbone, A., Grudinin, S., et al. (2019) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 122

Sequence clustering confounds AlphaFold2

Schafer, J. W., Lee, M., Chakravarty, D., Thole, J. F., Chen, E. A., & Porter, L. L. (2025) · Nature

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 38

Identification of a covert evolutionary pathway between two protein folds

Chakravarty, D., Sreenivasan, S., Swint-Kruse, L., & Porter, L. L. (2023) · Nature Communications

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 29

How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking

Chakravarty, D., McElfresh, G., Kundrotas, P. J., & Vakser, I. A. (2020) · Proteins Structure Function and Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 13

Identification of a covert evolutionary pathway between two protein folds

Chakravarty, D., Sreenivasan, S., Swint-Kruse, L., & Porter, L. L. (2022) · bioRxiv (Cold Spring Harbor Laboratory)

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2