Dräger, Andreas

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

King, Z. A., Lu, J., Dräger, A., Miller, P., Federowicz, S., Lerman, J. A., Ebrahim, A., Palsson, B. O., & Lewis, N. E. (2016) · Nucleic Acids Research

Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic Networks

Cited by 938

MEMOTE for standardized genome-scale metabolic model testing

Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., et al. (2020) · Nature Biotechnology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 509

Controlled vocabularies and semantics in systems biology

Courtot, M., Juty, N., Knüpfer, C., Waltemath, D., Zhukova, A., Dräger, A., Dumontier, M., Finney, A., Golebiewski, M., Hastings, J., et al. (2011) · Molecular Systems Biology

Biomedical Text Mining and OntologiesGene Regulatory Network Analysis

Cited by 316

The Systems Biology Markup Language (SBML): language specification for level 3 version 2 core release 2

Hucka, M., Bergmann, F. T., Chaouiya, C., Dräger, A., Hoops, S., Keating, S. M., König, M., Novère, N. L., Myers, C. J., Olivier, B. G., et al. (2019) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 258

Harmonizing semantic annotations for computational models in biology

Neal, M. L., König, M., Nickerson, D., Mısırlı, G., Kalbasi, R., Dräger, A., Atalag, K., Chelliah, V., Cooling, M. T., Cook, D. L., et al. (2019) · Briefings in Bioinformatics

Biomedical Text Mining and OntologiesScientific Computing and Data Management

Cited by 74

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, A., Almaas, E., Bauer, E., Bordbar, A., Burgard, A. P., Chang, R. L., Dräger, A., Famili, I., Feist, A. M., Fleming, R. M., et al. (2015) · Molecular Systems Biology

Microbial Metabolic Engineering and BioproductionGene Regulatory Network Analysis

Cited by 57

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

Rodriguez, N., Thomas, A., Watanabe, L., Vazirabad, I. Y., Kofia, V., Gómez, H. F., Mittag, F., Matthes, J., Rudolph, J., Wrzodek, F., et al. (2015) · Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 37

Qualitative translation of relations from BioPAX to SBML qual

Büchel, F., Wrzodek, C., Mittag, F., Dräger, A., Eichner, J., Rodriguez, N., Le Novère, N., & Zell, A. (2012) · Bioinformatics

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 22

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Hucka, M., Bergmann, F. T., Dräger, A., Hoops, S., Keating, S. M., Le Novère, N., Myers, C. J., Olivier, B. G., Sahle, S., Schaff, J. C., et al. (2015) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 16

An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter

Casini, I., McCubbin, T., Esquivel-Elizondo, S., Luque, G. G., Evseeva, D., Fink, C., Beblawy, S., Youngblut, N. D., Aristilde, L., Huson, D. H., et al. (2023) · iScience

Microbial Metabolic Engineering and BioproductionAnaerobic Digestion and Biogas Production

Cited by 14