Smith, Lucian P.

The Systems Biology Markup Language (SBML): language specification for level 3 version 2 core release 2

Hucka, M., Bergmann, F. T., Chaouiya, C., Dräger, A., Hoops, S., Keating, S. M., König, M., Novère, N. L., Myers, C. J., Olivier, B. G., et al. (2019) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 258

A reappraisal of how to build modular, reusable models of biological systems.

Neal, M. L., Cooling, M. T., Smith, L. P., Thompson, C. T., Sauro, H. M., Carlson, B. E., Cook, D. L., & Gennari, J. H. (2014) · PLoS Computational Biology

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 49

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)

Bergmann, F. T., Cooper, J., König, M., Moraru, I., Nickerson, D., Le Novère, N., Olivier, B. G., Sahle, S., Smith, L., & Waltemath, D. (2018) · Journal of Integrative Bioinformatics

Scientific Computing and Data ManagementGene Regulatory Network Analysis

Cited by 37

Adapting modeling and simulation credibility standards to computational systems biology

Tatka, L. T., Smith, L. P., Hellerstein, J. L., & Sauro, H. M. (2023) · Journal of Translational Medicine

Philosophy of Biology and Scientific ExplanationScientific Computing and Data Management

Cited by 27

Adapting Modeling and Simulation Credibility Standards to Computational Systems Biology

Tatka, L. T., Smith, L. P., Hellerstein, J. L., & Sauro, H. M. (2023) · arXiv

Philosophy of Biology and Scientific ExplanationScientific Computing and Data Management

Cited by 24

SBML and CellML translation in Antimony and JSim

Smith, L. P., Butterworth, E., Bassingthwaighte, J. B., & Sauro, H. M. (2014) · Bioinformatics

Gene Regulatory Network AnalysisModeling and Simulation Systems

Cited by 18

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4

Smith, L. P., Bergmann, F. T., Garny, A., Helikar, T., Karr, J., Nickerson, D., Sauro, H., Waltemath, D., & König, M. (2021) · Journal of Integrative Bioinformatics

Scientific Computing and Data ManagementResearch Data Management Practices

Cited by 17

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Hucka, M., Bergmann, F. T., Dräger, A., Hoops, S., Keating, S. M., Le Novère, N., Myers, C. J., Olivier, B. G., Sahle, S., Schaff, J. C., et al. (2015) · Journal of Integrative Bioinformatics

Gene Regulatory Network AnalysisScientific Computing and Data Management

Cited by 16