Derry, Alexander

Simulating 500 million years of evolution with a language model

Hayes, T., Rao, R., Akin, H., Sofroniew, N. J., Oktay, D., Lin, Z., Verkuil, R., Tran, V. Q., Deaton, J., Wiggert, M., et al. (2025) · Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 937

Protein sequence design with a learned potential

Anand, N., Eguchi, R., Mathews, I. I., Perez, C. P., Derry, A., Altman, R. B., & Huang, P.-S. (2022) · Nature Communications

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 171

COLLAPSE: A representation learning framework for identification and characterization of protein structural sites

Derry, A., & Altman, R. B. (2022) · Protein Science

Protein Structure and DynamicsMachine Learning in Bioinformatics

Cited by 16

Unsupervised learning reveals landscape of local structural motifs across protein classes

Derry, A., & Altman, R. B. (2023) · Bioinformatics

Protein Structure and DynamicsEnzyme Structure and Function

Cited by 2