Human body epigenome maps reveal noncanonical DNA methylation variation

Human DNA methylomes at base resolution show widespread epigenomic differences

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GREAT improves functional interpretation of cis-regulatory regions

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Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

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Super-enhancers in the control of cell identity and disease

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

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X-inactivation profile reveals extensive variability in X-linked gene expression in females

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Global epigenomic reconfiguration during mammalian brain development

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Conserved role of intragenic DNA methylation in regulating alternative promoters

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

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Charting a dynamic DNA methylation landscape of the human genome

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Plasticity of Adult Stem Cells

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Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

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Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

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Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells

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Dynamic DNA methylation across diverse human cell lines and tissuesPreprint

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Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains

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Non-CpG methylation of the PGC-1α promoter through DNMT3B controls mitochondrial density.

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Hepatocyte nuclear factor 4α controls the development of a hepatic epithelium and liver morphogenesis

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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

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Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

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Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

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The human placenta methylome

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‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes

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Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing

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Cell type–specific DNA methylation at intragenic CpG islands in the immune systemPreprint

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Integrative analysis of haplotype-resolved epigenomes across human tissues

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Pbx/Meis Deficiencies Demonstrate Multigenetic Origins of Congenital Heart Disease

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Predicting the human epigenome from DNA motifs

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Nonmuscle myosin is regulated during smooth muscle contraction

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The diverse roles of DNA methylation in mammalian development and disease

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Editing DNA Methylation in the Mammalian Genome

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Landscape of X chromosome inactivation across human tissues

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DNA methylation aging clocks: challenges and recommendations

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Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes

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Mapping genome-wide transcription-factor binding sites using DAP-seq

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Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

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The impact of sex on gene expression across human tissues

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Dynamic DNA methylation: In the right place at the right time

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Transcription factors as readers and effectors of DNA methylation

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Widespread natural variation of DNA methylation within angiosperms

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Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex

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Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA

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Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene

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DNA methylation loss in late-replicating domains is linked to mitotic cell division

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

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Using DNA methylation profiling to evaluate biological age and longevity interventions

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Widespread long-range cis-regulatory elements in the maize genome

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Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain

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Evolution of DNA Methylation across Insects

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Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

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Widespread adenine N6-methylation of active genes in fungi

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On the origin and evolutionary consequences of gene body DNA methylation

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Landscape and Regulation of m6A and m6Am Methylome across Human and Mouse Tissues

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Highly scalable generation of DNA methylation profiles in single cells

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DNA methylation atlas of the mouse brain at single-cell resolution

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Tissue source determines the differentiation potentials of mesenchymal stem cells: a comparative study of human mesenchymal stem cells from bone marrow and adipose tissue

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The how and why of lncRNA function: An innate immune perspective

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Dynamic DNA methylation reconfiguration during seed development and germination

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Biological embedding of experience: a primer on epigenetics

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Non-CG Methylation in the Human Genome

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The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas

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Derivation of consensus inactivation status for X-linked genes from genome-wide studies

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Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

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Epigenetic regulation in major depression and other stress-related disorders: molecular mechanisms, clinical relevance and therapeutic potential

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X-Chromosome Inactivation: A Crossroads Between Chromosome Architecture and Gene Regulation

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Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells

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Active DNA demethylation at enhancers during the vertebrate phylotypic period

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Overlooked roles of DNA damage and maternal age in generating human germline mutations

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Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer

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Subtype-specific 3D genome alteration in acute myeloid leukaemia

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Allosteric control of mammalian DNA methyltransferases – a new regulatory paradigm

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CGmapTools improves the precision of heterozygous SNV calls and supports allele-specific methylation detection and visualization in bisulfite-sequencing data

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Unique cell-type-specific patterns of DNA methylation in the root meristem

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DNA methylation QTL mapping across diverse human tissues provides molecular links between genetic variation and complex traits

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Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing

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ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration

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Dynamic genome evolution in a model fern

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DNA Methylation Signatures of the Plant Chromomethyltransferases

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The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants

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The environment, epigenome, and asthma

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Escape Artists of the X Chromosome

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